Gene: AT1G79090
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G79090
- Transcript Identifier AT1G79090.3
- Gene Type Coding gene
- Location Chr1 : 29749551-29752945 : negative
Gene Family Information
- ID HOM05D001696
- #Genes/#Species 382/99
- Phylogenetic origin
- ID ORTHO05D001746
- #Genes/#Species 360/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G79090.3
- Alias PAT1,Arabidopsis homolog of yeast PAT1
- uniprot Q0WPK4
Descriptions
- Description topoisomerase II-associated protein
- Computational description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000290 | IEA | GOA Database | deadenylation-dependent decapping of nuclear-transcribed mRNA | |
| GO:0000290 | IMP IBA | Gene Ontology | deadenylation-dependent decapping of nuclear-transcribed mRNA | 1 2 |
| GO:0000290 | IEA | InterPro | deadenylation-dependent decapping of nuclear-transcribed mRNA | |
| GO:0045087 | IMP | Gene Ontology | innate immune response | 2 |
| GO:0033962 | IBA | Gene Ontology | P-body assembly | 1 |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0006952 | IEA | GOA Database | defense response |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
| GO:0003729 | IDA, HDA | Gene Ontology | mRNA binding | 3 4 |
| GO:0003723 | IBA | Gene Ontology | RNA binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000932 | IEA | GOA Database | P-body | |
| GO:0000932 | IDA IBA | Gene Ontology | P-body | 1 2 |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR039900 | Pat1-like |
| Mapman id | Description |
|---|---|
| 16.4.2.5 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decay factor (PAT1) |