Gene: Solyc12g017260.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc12g017260.2
- Transcript Identifier Solyc12g017260.2.1
- Gene Type Coding gene
- Location SL4.0ch12 : 6490825-6502087 : negative
Gene Family Information
- ID HOM05D001696
- #Genes/#Species 382/99
- Phylogenetic origin
- ID ORTHO05D001746
- #Genes/#Species 360/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc12g017260.2.1
- uniprot A0A3Q7J6B0
- gene_id Solyc12g017260
Descriptions
- Description protein PAT1 homolog 1-like (AHRD V3.3 *** A0A2I4EXG6_9ROSI)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000290 | IBA IEA | GOA Database | deadenylation-dependent decapping of nuclear-transcribed mRNA | |
| GO:0000290 | IEA | InterPro | deadenylation-dependent decapping of nuclear-transcribed mRNA | |
| GO:0033962 | IBA | GOA Database | P-body assembly | |
| GO:0045087 | ISO | PLAZA Integrative Orthology | innate immune response | AT1G79090 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IBA | GOA Database | RNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G79090 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G79090 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000932 | IBA | GOA Database | P-body |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR039900 | Pat1-like |
| Mapman id | Description |
|---|---|
| 16.4.2.5 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decay factor (PAT1) |