Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p29410 Brassica napus HOM05D003391 ORTHO05D014971 1.9e-71 272.3 130 100.0
BolC7t43185H Brassica oleracea HOM05D003391 ORTHO05D014971 4.0e-21 105.1 61 80.3
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 8.9e-21 104.0 62 77.4
C05p42470 Brassica napus HOM05D003391 ORTHO05D014971 1.2e-20 103.6 61 78.7
BcaC07g38452 Brassica carinata HOM05D040375 ORTHO05D014971 2.6e-20 102.4 63 76.2
C08p12200 Brassica napus HOM05D003391 ORTHO05D014971 3.4e-20 102.1 61 78.7
BolC3t14904H Brassica oleracea HOM05D003391 ORTHO05D014971 3.4e-20 102.1 61 77.0
BolC8t48861H Brassica oleracea HOM05D003391 ORTHO05D014971 3.4e-20 102.1 61 78.7
C01p37660 Brassica napus HOM05D003391 ORTHO05D014971 9.2e-18 94.0 62 74.2
CARHR040520 Cardamine hirsuta HOM05D003391 ORTHO05D005563 1.2e-12 77.0 94 46.8
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 2.0e-12 76.3 89 47.2
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 2.0e-12 76.3 87 47.1
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 2.6e-12 75.9 92 48.9
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 3.4e-12 75.5 94 45.7
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 3.4e-12 75.5 90 48.9
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 5.8e-12 74.7 94 45.7
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 5.8e-12 74.7 94 45.7
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 5.8e-12 74.7 94 45.7
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 5.8e-12 74.7 94 45.7
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 5.8e-12 74.7 94 45.7
Thhalv10012404m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 5.8e-12 74.7 94 45.7
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 5.8e-12 74.7 94 45.7
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 9.9e-12 73.9 94 45.7
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 9.9e-12 73.9 94 45.7
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 9.9e-12 73.9 94 45.7
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 9.9e-12 73.9 95 44.2
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 1.3e-11 73.6 95 44.2
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 1.3e-11 73.6 92 47.8
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.3e-11 73.6 89 46.1
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 1.7e-11 73.2 92 44.6
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 1.7e-11 73.2 91 45.1
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 1.7e-11 73.2 91 45.1
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 2.2e-11 72.8 93 44.1
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 2.2e-11 72.8 93 44.1
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 2.2e-11 72.8 92 44.6
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.2e-11 72.8 92 44.6
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.2e-11 72.8 92 44.6
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.2e-11 72.8 92 44.6
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 2.9e-11 72.4 94 44.7
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 2.9e-11 72.4 94 44.7
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 2.9e-11 72.4 94 44.7
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 4.9e-11 71.6 90 45.6
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 4.9e-11 71.6 94 43.6
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 4.9e-11 71.6 94 43.6
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 6.4e-11 71.2 94 44.7
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 8.4e-11 70.9 91 44.0
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 8.4e-11 70.9 93 43.0
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 8.4e-11 70.9 92 46.7
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 1.1e-10 70.5 84 50.0
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 1.1e-10 70.5 92 46.7
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 1.1e-10 70.5 92 43.5
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.4e-10 70.1 91 44.0
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.4e-10 70.1 91 44.0
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 1.4e-10 70.1 89 47.2
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 1.4e-10 70.1 90 44.4
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 1.4e-10 70.1 91 45.1
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 2.4e-10 69.3 92 43.5
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 2.4e-10 69.3 89 46.1
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 2.4e-10 69.3 89 46.1
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 2.4e-10 69.3 89 46.1
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 2.4e-10 69.3 90 45.6
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 2.4e-10 69.3 89 46.1
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 2.4e-10 69.3 92 43.5
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 2.4e-10 69.3 89 46.1
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 3.2e-10 68.9 92 45.7
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 3.2e-10 68.9 89 43.8
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 4.2e-10 68.6 93 43.0
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 4.2e-10 68.6 89 44.9
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 9.3e-10 67.4 91 45.1
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 9.3e-10 67.4 91 45.1
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 9.3e-10 67.4 91 45.1
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 9.3e-10 67.4 92 42.4
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.2e-09 67.0 91 42.9
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 1.2e-09 67.0 96 41.7
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 1.6e-09 66.6 92 42.4
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 2.1e-09 66.2 92 42.4
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 2.1e-09 66.2 92 42.4
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 2.1e-09 66.2 95 43.2
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 2.1e-09 66.2 94 43.6
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 2.1e-09 66.2 96 43.8
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 2.7e-09 65.9 89 42.7
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 2.7e-09 65.9 89 42.7
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 3.5e-09 65.5 94 42.6
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 3.5e-09 65.5 90 45.6
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 3.5e-09 65.5 90 45.6
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 4.6e-09 65.1 94 40.4
CAN.G5179.1 Capsicum annuum HOM05D003391 ORTHO05D005563 4.6e-09 65.1 94 40.4
MBI18_g28219_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 4.6e-09 65.1 90 43.3
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 4.6e-09 65.1 92 42.4
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 4.6e-09 65.1 92 43.5
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 6.0e-09 64.7 92 42.4
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 6.0e-09 64.7 92 42.4
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 6.0e-09 64.7 90 42.2
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 7.8e-09 64.3 94 40.4
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 7.8e-09 64.3 92 40.2
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.0e-08 63.9 99 39.4
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 1.0e-08 63.9 95 40.0
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 1.0e-08 63.9 98 40.8
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 1.0e-08 63.9 101 39.6
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.3e-08 63.5 100 38.0
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 1.3e-08 63.5 96 39.6
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 1.7e-08 63.2 95 42.1
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 1.7e-08 63.2 94 40.4
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.7e-08 63.2 94 42.6
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 2.3e-08 62.8 95 38.9
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 3.0e-08 62.4 95 38.9
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 3.0e-08 62.4 95 38.9
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 3.0e-08 62.4 95 38.9
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 3.9e-08 62.0 95 38.9
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 5.1e-08 61.6 91 40.7
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 5.1e-08 61.6 94 40.4
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 6.6e-08 61.2 95 37.9
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 1.1e-07 60.5 103 35.9
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 1.5e-07 60.1 96 37.5
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 2.5e-07 59.3 93 40.9
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 2.5e-07 59.3 92 41.3
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 3.3e-07 58.9 93 38.7
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 3.3e-07 58.9 87 37.9
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 7.3e-07 57.8 94 41.5
SEGI_21663 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 7.3e-07 57.8 90 36.7
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 2.1e-06 56.2 107 34.6
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 3.6e-06 55.5 92 38.0


User provided reference genes

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