Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 2.8e-299 1031.2 523 100.0
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 1.3e-296 1022.3 524 99.4
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 5.0e-296 1020.4 524 99.2
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 1.4e-290 1002.3 526 97.0
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 1.2e-289 999.2 526 96.6
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 6.1e-254 880.6 529 85.1
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 6.8e-253 877.1 529 85.6
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 1.5e-252 875.9 531 86.1
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 4.5e-249 864.4 529 84.1
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 9.5e-247 856.7 532 84.4
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 6.1e-246 854.0 535 83.7
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 1.4e-226 789.6 535 78.3
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 2.8e-222 775.4 425 94.6
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 1.6e-214 749.6 536 73.9
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 4.3e-191 671.8 528 68.4
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 2.8e-190 669.1 561 65.4
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.1e-189 667.2 563 64.7
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 5.3e-189 664.8 543 66.5
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 5.3e-189 664.8 563 64.7
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 9.0e-189 664.1 543 66.3
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 4.5e-188 661.8 556 64.7
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 6.5e-187 657.9 496 69.6
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.1e-186 657.1 531 66.7
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.4e-186 656.8 515 67.6
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 3.2e-186 655.6 490 69.4
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 4.2e-186 655.2 476 71.4
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 7.1e-186 654.4 462 73.8
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 7.1e-186 654.4 476 71.2
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 9.3e-186 654.1 476 71.2
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 6.0e-185 651.4 459 73.4
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 6.0e-185 651.4 543 65.0
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 2.3e-184 649.4 521 64.9
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 3.9e-184 648.7 545 64.6
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 2.2e-182 642.9 540 64.1
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 2.8e-182 642.5 539 64.4
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 3.7e-182 642.1 546 63.2
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.1e-181 640.6 545 64.0
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 1.1e-181 640.6 560 62.3
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 3.1e-181 639.0 459 72.3
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 4.1e-181 638.6 539 64.6
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 9.0e-181 637.5 521 65.5
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 1.5e-180 636.7 477 68.8
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 2.0e-180 636.3 480 70.2
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 4.5e-180 635.2 532 65.2
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 5.9e-180 634.8 540 63.7
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 5.9e-180 634.8 480 67.5
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 2.2e-179 632.9 536 63.6
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 5.0e-179 631.7 527 65.1
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 1.1e-178 630.6 546 62.5
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 1.9e-178 629.8 477 67.3
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 3.2e-178 629.0 506 65.4
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 4.2e-178 628.6 536 63.2
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 7.2e-178 627.9 475 67.4
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 7.2e-178 627.9 500 66.6
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 7.2e-178 627.9 598 58.2
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.2e-177 627.1 538 63.9
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.0e-176 624.0 477 68.8
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 2.3e-176 622.9 477 67.1
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 3.0e-176 622.5 461 70.1
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 3.9e-176 622.1 438 73.3
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 1.9e-175 619.8 488 67.6
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 5.7e-175 618.2 494 65.4
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 1.3e-174 617.1 479 66.0
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 2.2e-174 616.3 445 71.2
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 4.8e-174 615.1 510 63.5
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 8.2e-174 614.4 500 65.2
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 1.8e-173 613.2 532 62.0
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.5e-172 610.1 536 61.9
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 1.5e-172 610.1 498 65.7
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.5e-172 610.1 478 68.2
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 4.5e-172 608.6 542 62.4
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 1.3e-171 607.1 502 64.9
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 3.8e-171 605.5 502 65.1
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 8.5e-171 604.4 510 62.7
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 2.5e-170 602.8 483 65.8
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 5.5e-170 601.7 483 64.6
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 2.7e-169 599.4 532 63.0
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 3.6e-169 599.0 517 62.5
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 1.4e-168 597.0 506 63.6
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 8.8e-168 594.3 543 61.0
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 8.8e-168 594.3 590 57.8
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 2.6e-167 592.8 486 65.2
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 3.3e-167 592.4 501 64.5
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 4.4e-167 592.0 506 63.0
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 1.8e-165 586.6 478 66.1
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 2.2e-163 579.7 497 63.0
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 3.2e-162 575.9 462 67.5
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 8.8e-160 567.8 508 60.6
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 1.0e-155 554.3 474 63.3
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 9.7e-151 537.7 464 63.1
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 2.2e-147 526.6 479 58.9
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 6.5e-147 525.0 424 64.6
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 2.3e-144 516.5 427 63.0
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 1.4e-133 480.7 498 54.6
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 7.3e-130 468.4 494 52.6
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.3e-94 351.3 323 57.6
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 4.3e-90 336.3 301 62.1
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 2.8e-81 307.0 433 44.3
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 3.5e-76 290.0 228 67.1
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 6.0e-76 289.3 242 64.0
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-74 285.0 160 81.9
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.0e-70 271.9 266 56.4
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 5.5e-69 266.2 491 38.3
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.0e-62 245.4 273 53.1
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 4.6e-60 236.5 197 64.5
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.0e-59 235.3 359 39.6
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 2.5e-58 230.7 466 34.1
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.9e-54 217.2 147 75.5
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 3.2e-53 213.8 121 79.3
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 4.7e-52 209.9 121 81.0
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 2.8e-49 200.7 178 59.6
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 4.5e-47 193.4 260 46.2
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 2.7e-44 184.1 165 58.8
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 4.5e-39 166.8 330 35.8
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 5.9e-31 139.8 80 80.0
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-29 135.6 109 67.0
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 1.4e-27 128.6 219 40.2
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 7.2e-21 106.3 100 57.0
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 5.2e-19 100.1 81 67.9
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 4.9e-17 93.6 102 59.8
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 1.8e-16 91.7 88 54.5
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 1.6e-15 88.6 111 49.5
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 2.9e-14 84.3 138 44.9
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 3.3e-13 80.9 53 66.0
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 6.1e-12 76.6 93 44.1
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 4.0e-11 73.9 76 55.3
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 1.5e-10 72.0 76 57.9
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 9.2e-08 62.8 46 56.5
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 1.6e-07 62.0 32 90.6


User provided reference genes

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