Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.6e-35 152.1 72 100.0
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.6e-35 152.1 72 100.0
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 3.0e-18 94.7 87 60.9
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 3.0e-18 94.7 87 60.9
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 3.0e-18 94.7 87 60.9
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 3.0e-18 94.7 87 60.9
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 3.0e-18 94.7 87 60.9
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 3.0e-18 94.7 87 60.9
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 3.9e-18 94.4 87 58.6
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 3.9e-18 94.4 87 59.8
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 3.9e-18 94.4 87 59.8
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.5e-17 92.4 87 58.6
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 1.5e-17 92.4 87 58.6
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 1.9e-17 92.0 87 57.5
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 7.4e-17 90.1 87 57.5
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 1.3e-16 89.4 87 56.3
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 1.6e-16 89.0 87 56.3
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 1.6e-16 89.0 87 55.2
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 1.6e-16 89.0 87 56.3
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 2.8e-16 88.2 87 55.2
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 3.7e-16 87.8 87 55.2
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 4.8e-16 87.4 87 56.3
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 4.8e-16 87.4 87 54.0
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 4.8e-16 87.4 87 55.2
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 6.3e-16 87.0 87 55.2
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 8.2e-16 86.7 87 52.9
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 8.2e-16 86.7 87 52.9
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 8.2e-16 86.7 87 52.9
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 8.2e-16 86.7 87 52.9
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 8.2e-16 86.7 87 52.9
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 8.2e-16 86.7 87 54.0
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 1.4e-15 85.9 87 51.7
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.4e-15 85.9 87 54.0
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.8e-15 85.5 87 54.0
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.8e-15 85.5 87 54.0
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 1.8e-15 85.5 87 54.0
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 1.8e-15 85.5 87 54.0
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 2.4e-15 85.1 87 56.3
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 3.1e-15 84.7 87 52.9
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.1e-15 84.7 87 52.9
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 3.1e-15 84.7 87 54.0
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 3.1e-15 84.7 87 54.0
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 3.1e-15 84.7 87 52.9
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 3.1e-15 84.7 87 54.0
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 4.1e-15 84.3 86 54.7
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 5.3e-15 84.0 87 54.0
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 6.9e-15 83.6 87 52.9
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 6.9e-15 83.6 87 51.7
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 9.0e-15 83.2 87 52.9
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 1.2e-14 82.8 87 50.6
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.0e-14 82.0 87 51.7
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 3.4e-14 81.3 87 50.6
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 3.4e-14 81.3 87 51.7
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 3.4e-14 81.3 86 51.2
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 5.9e-14 80.5 87 52.9
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 7.7e-14 80.1 87 51.7
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 7.7e-14 80.1 87 48.3
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 7.7e-14 80.1 87 49.4
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 7.7e-14 80.1 87 49.4
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 1.0e-13 79.7 87 49.4
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 1.0e-13 79.7 87 50.6
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 1.3e-13 79.3 87 49.4
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 1.3e-13 79.3 87 51.7
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.3e-13 79.3 88 53.4
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.3e-13 79.3 88 53.4
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 2.2e-13 78.6 86 47.7
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 2.2e-13 78.6 87 50.6
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 2.2e-13 78.6 87 49.4
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 2.9e-13 78.2 86 47.7
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 2.9e-13 78.2 87 48.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 2.9e-13 78.2 87 48.3
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 2.9e-13 78.2 87 48.3
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 3.8e-13 77.8 87 48.3
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 3.8e-13 77.8 87 48.3
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 5.0e-13 77.4 87 48.3
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 5.0e-13 77.4 87 48.3
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 5.0e-13 77.4 86 47.7
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 5.0e-13 77.4 86 47.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 5.0e-13 77.4 88 52.3
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 6.5e-13 77.0 87 47.1
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 6.5e-13 77.0 87 48.3
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 1.1e-12 76.3 86 46.5
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.5e-12 75.1 88 50.0
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 2.5e-12 75.1 88 50.0
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 3.2e-12 74.7 87 48.3
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 4.2e-12 74.3 94 48.9
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 4.2e-12 74.3 87 46.0
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 4.2e-12 74.3 87 46.0
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 9.4e-12 73.2 88 48.9
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.4e-12 73.2 87 48.3
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 9.4e-12 73.2 87 46.0
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 9.4e-12 73.2 87 49.4
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 9.4e-12 73.2 87 49.4
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 3.6e-11 71.2 87 44.8
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 6.1e-11 70.5 86 47.7
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-10 69.7 87 43.7
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 3.0e-10 68.2 87 42.5
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 3.0e-10 68.2 87 42.5
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 3.9e-10 67.8 88 46.6
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 6.7e-10 67.0 87 47.1
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.1e-09 66.2 37 81.1
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 1.3e-08 62.8 84 44.0
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 1.7e-08 62.4 88 42.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.8e-08 61.6 37 73.0
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 4.8e-08 60.8 87 44.8
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 4.8e-08 60.8 87 44.8
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 2.4e-07 58.5 84 39.3
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 5.9e-06 53.9 42 57.1


User provided reference genes

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