Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1976.8 1018 100.0
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1955.6 1008 100.0
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 0.0e+00 1713.7 1021 90.9
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1627.1 1016 86.9
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 0.0e+00 1627.1 1016 86.9
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 0.0e+00 1605.5 1017 84.0
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 0.0e+00 1605.5 1017 84.0
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1577.0 1024 82.9
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 0.0e+00 1553.5 1023 81.6
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 0.0e+00 1484.2 1030 77.2
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 0.0e+00 1457.6 1025 76.9
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 0.0e+00 1449.1 1023 76.2
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1435.6 1020 76.4
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 0.0e+00 1430.6 1020 76.1
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 0.0e+00 1422.9 1017 76.0
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1412.1 1020 75.9
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1412.1 1020 75.9
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1389.0 1019 74.9
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 0.0e+00 1349.0 1054 70.4
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 0.0e+00 1239.9 1029 67.2
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 0.0e+00 1221.8 1028 66.2
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 0.0e+00 1109.4 962 65.7
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.4e-311 1072.8 683 81.6
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 2.5e-291 1005.7 1032 57.0
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 8.8e-281 970.7 1036 55.1
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 1.3e-279 966.8 1042 55.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 5.7e-272 941.4 1095 52.4
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 5.7e-272 941.4 1046 54.0
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 4.8e-271 938.3 1092 53.0
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 4.0e-265 918.7 1041 53.1
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 1.7e-263 913.3 1041 53.6
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.1e-262 909.1 1055 51.8
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 2.9e-260 902.5 1039 52.3
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.1e-259 900.6 1039 52.2
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.8e-257 893.3 1039 51.9
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 9.8e-256 887.5 1092 50.1
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 2.8e-255 885.9 1035 51.4
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 3.7e-255 885.6 1041 51.5
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 4.8e-255 885.2 1075 50.7
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 5.4e-254 881.7 1076 50.7
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.9e-253 878.2 1049 51.4
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 5.9e-253 878.2 1035 50.7
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.2e-252 876.3 1056 51.2
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 6.5e-252 874.8 1036 50.8
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 8.5e-252 874.4 1063 50.0
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 1.9e-251 873.2 1148 48.3
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 5.5e-251 871.7 1056 51.0
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 5.5e-251 871.7 1112 48.7
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 1.8e-249 866.7 1031 50.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.0e-249 865.9 1053 51.3
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 1.2e-248 864.0 1111 49.3
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 2.0e-248 863.2 1036 51.2
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.6e-248 862.8 1073 50.7
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 2.8e-247 859.4 1036 50.0
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 4.9e-247 858.6 1083 48.9
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 8.3e-247 857.8 1109 48.3
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 3.1e-246 855.9 1062 49.7
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 2.3e-244 849.7 1070 49.3
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.9e-244 849.4 1026 50.2
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 5.0e-244 848.6 977 52.5
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 8.6e-244 847.8 1123 47.9
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 1.5e-243 847.0 1109 47.5
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 4.7e-242 842.0 1042 51.0
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 6.1e-242 841.6 1109 48.4
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 8.9e-241 837.8 1039 49.5
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 5.7e-240 835.1 1069 48.5
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.1e-238 830.9 1039 49.4
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 1.8e-238 830.1 1029 49.6
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 3.2e-238 829.3 1039 49.3
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.2e-237 827.4 1056 49.8
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 1.3e-236 823.9 1095 48.0
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 5.6e-235 818.5 1081 48.5
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.7e-231 807.0 1043 49.4
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 4.9e-231 805.4 1022 48.9
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 2.7e-229 799.7 1037 49.0
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 2.3e-228 796.6 1043 48.8
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 5.6e-227 792.0 1054 48.7
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 2.6e-224 783.1 933 51.4
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.2e-221 774.2 1030 48.0
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 7.8e-221 771.5 1036 47.7
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.1e-219 767.7 1084 46.6
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 5.6e-219 765.4 1023 49.2
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 1.6e-218 763.8 943 50.2
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.6e-218 763.8 785 57.2
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.1e-217 761.1 1110 43.7
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.4e-217 760.8 1036 47.8
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 2.3e-217 760.0 1028 47.9
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 5.2e-217 758.8 1029 48.9
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 1.4e-214 750.7 997 47.3
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 7.1e-214 748.4 1064 47.6
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.6e-213 747.3 1080 46.6
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 4.6e-213 745.7 1037 47.0
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 5.6e-211 738.8 1018 47.5
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 8.1e-210 734.9 1030 45.9
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 6.9e-209 731.9 1171 42.0
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 9.6e-203 711.4 902 48.2
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.2e-200 704.5 1035 44.7
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 3.8e-199 699.5 1037 44.8
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 6.4e-199 698.7 985 45.3
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.1e-195 688.0 838 50.6
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.9e-195 687.2 1128 42.5
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 3.8e-191 672.9 985 44.3
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 8.4e-191 671.8 714 54.1
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 4.2e-190 669.5 1173 40.5
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 3.5e-189 666.4 1066 43.5
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 6.0e-189 665.6 1014 44.0
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 5.7e-179 632.5 597 59.0
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 3.1e-177 626.7 648 55.2
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 5.9e-168 595.9 890 44.8
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 6.1e-165 585.9 858 44.5
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 8.8e-164 582.0 525 60.6
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 6.5e-159 565.8 848 44.0
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 8.5e-159 565.5 851 42.9
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.6e-157 561.2 828 45.7
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 6.3e-154 549.3 848 42.9
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 4.4e-147 526.6 881 41.7
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 5.3e-145 519.6 1081 38.9
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 2.7e-141 507.3 403 65.8
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.0e-139 501.1 977 39.6
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 8.6e-135 485.7 951 38.9
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 3.0e-132 477.2 367 67.0
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 8.8e-132 475.7 366 67.5
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 5.2e-124 449.9 1019 35.9
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 4.9e-114 416.8 352 59.9
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 2.1e-109 401.4 331 65.0
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 2.8e-101 374.4 841 36.6
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 1.1e-97 362.5 1137 32.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 5.6e-94 350.1 510 43.9
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 3.0e-71 274.6 378 48.1
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 3.3e-70 271.2 255 55.7
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.7e-66 258.8 340 49.4
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.4e-65 255.8 455 38.0
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 1.2e-64 252.7 571 37.5
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 3.0e-63 248.1 312 45.8
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 5.9e-59 233.8 296 43.9
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 8.8e-47 193.4 181 56.4
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 3.3e-46 191.4 611 28.5
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.3e-46 191.4 158 61.4
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 3.1e-44 184.9 334 38.3
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 5.9e-43 180.6 131 65.6
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.9e-43 180.6 265 43.8
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.0e-42 179.9 148 66.2
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 2.9e-42 178.3 386 38.6
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.6e-40 172.6 152 55.9
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.0e-39 169.9 279 36.2
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.9e-39 167.9 555 31.7
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.9e-39 167.9 555 31.7
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 7.0e-36 157.1 173 53.2
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 5.9e-35 154.1 144 60.4
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 1.8e-31 142.5 134 59.7
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 8.8e-31 140.2 292 40.1
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.0e-30 139.0 170 45.3
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 1.2e-24 119.8 97 64.9
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.4e-23 116.3 86 65.1
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 1.8e-23 115.9 81 70.4
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 8.8e-23 113.6 86 64.0
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 5.7e-22 110.9 73 71.2
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 5.5e-17 94.4 66 69.7
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 2.8e-16 92.0 103 53.4
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 6.8e-15 87.4 488 27.3
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 2.6e-14 85.5 160 38.8
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 3.7e-13 81.6 67 56.7
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 8.3e-13 80.5 473 27.5
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.3e-10 73.2 51 62.7
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 6.6e-10 70.9 93 40.9
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.5e-09 68.9 50 64.0
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 5.6e-09 67.8 65 61.5
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 9.5e-09 67.0 44 63.6
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 2.1e-08 65.9 50 60.0
CARHR134090 Cardamine hirsuta HOM05D000283 ORTHO05D116263 3.6e-08 65.1 50 68.0


User provided reference genes

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