Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 3.6e-47 191.0 85 100.0
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 3.6e-47 191.0 85 100.0
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 9.6e-40 166.4 79 96.2
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 9.6e-40 166.4 79 96.2
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 9.6e-40 166.4 79 96.2
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 9.6e-40 166.4 79 96.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 9.6e-40 166.4 79 96.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 9.6e-40 166.4 79 96.2
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 2.1e-39 165.2 79 94.9
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 4.8e-39 164.1 79 94.9
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-38 162.2 79 92.4
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 1.8e-38 162.2 79 92.4
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 1.8e-38 162.2 79 92.4
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.8e-38 162.2 79 92.4
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 1.8e-38 162.2 79 92.4
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.8e-38 162.2 79 92.4
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 4.0e-38 161.0 79 91.1
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.9e-38 160.2 79 91.1
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.5e-37 159.1 79 91.1
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.5e-37 159.1 79 91.1
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 3.4e-37 157.9 79 89.9
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 2.2e-36 155.2 79 87.3
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.8e-36 154.5 79 88.6
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.1e-35 152.9 79 88.6
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 2.4e-35 151.8 79 86.1
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 3.2e-35 151.4 79 83.5
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 3.2e-35 151.4 79 84.8
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.6e-34 149.1 79 84.8
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.6e-34 149.1 79 84.8
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.6e-34 149.1 79 84.8
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 2.1e-34 148.7 79 82.3
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 2.1e-34 148.7 79 83.5
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 2.1e-34 148.7 79 82.3
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 2.7e-34 148.3 79 83.5
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.7e-34 148.3 79 82.3
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 3.5e-34 147.9 79 81.0
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 3.5e-34 147.9 79 83.5
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 3.5e-34 147.9 79 83.5
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 3.5e-34 147.9 79 83.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 4.6e-34 147.5 79 82.3
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 4.6e-34 147.5 79 82.3
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 4.6e-34 147.5 79 83.5
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 6.0e-34 147.1 79 82.3
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 6.0e-34 147.1 79 82.3
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 6.0e-34 147.1 79 82.3
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.0e-34 147.1 79 81.0
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.0e-34 147.1 79 81.0
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 6.0e-34 147.1 79 81.0
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 6.0e-34 147.1 79 82.3
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 7.9e-34 146.7 79 79.7
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 7.9e-34 146.7 79 81.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 7.9e-34 146.7 79 81.0
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 7.9e-34 146.7 79 79.7
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.0e-33 146.4 79 81.0
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.3e-33 146.0 79 79.7
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.3e-33 146.0 79 79.7
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.3e-33 146.0 79 81.0
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.8e-33 145.6 77 81.8
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 2.3e-33 145.2 79 79.7
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 2.3e-33 145.2 79 81.0
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.9e-33 144.4 79 79.7
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 3.9e-33 144.4 79 77.2
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 3.9e-33 144.4 79 77.2
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 3.9e-33 144.4 79 77.2
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.9e-33 144.4 79 79.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 5.1e-33 144.1 79 79.7
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.7e-33 143.7 79 78.5
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 6.7e-33 143.7 79 79.7
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 6.7e-33 143.7 79 78.5
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 8.7e-33 143.3 79 81.0
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 8.7e-33 143.3 79 81.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 8.7e-33 143.3 79 78.5
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.1e-32 142.9 79 79.7
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.1e-32 142.9 79 78.5
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.1e-32 142.9 83 75.9
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.1e-32 142.9 79 77.2
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.1e-32 142.9 79 78.5
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.5e-32 142.5 79 79.7
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.9e-32 142.1 79 77.2
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.9e-32 142.1 79 77.2
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.9e-32 142.1 79 78.5
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.9e-32 142.1 79 77.2
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.9e-32 142.1 79 77.2
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.9e-32 142.1 79 79.7
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.9e-32 142.1 79 79.7
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.5e-32 141.7 79 78.5
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 2.5e-32 141.7 80 80.0
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 2.5e-32 141.7 79 78.5
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 2.5e-32 141.7 79 78.5
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 2.5e-32 141.7 79 77.2
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 2.5e-32 141.7 79 77.2
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.3e-32 141.4 79 78.5
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 4.3e-32 141.0 79 78.5
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.3e-32 141.0 79 78.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.3e-32 141.0 79 78.5
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 5.6e-32 140.6 79 77.2
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 5.6e-32 140.6 79 75.9
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 7.4e-32 140.2 79 77.2
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.4e-32 140.2 79 78.5
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.3e-31 139.4 79 75.9
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.6e-31 139.0 79 74.7
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.6e-31 139.0 79 74.7
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.6e-31 139.0 79 77.2
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.1e-31 138.7 79 75.9
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 2.8e-31 138.3 79 75.9
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 2.8e-31 138.3 79 77.2
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 4.8e-31 137.5 79 73.4
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 6.2e-31 137.1 73 82.2
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.1e-31 136.7 79 77.2
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.1e-30 136.3 79 73.4
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.1e-30 136.3 79 74.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 2.4e-30 135.2 79 75.9
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.4e-30 135.2 79 73.4
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.4e-30 135.2 79 73.4
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 4.0e-30 134.4 80 76.2
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.2e-29 132.9 81 72.8
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.0e-29 132.1 79 72.2
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 6.4e-28 127.1 79 70.9
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 6.4e-28 127.1 79 70.9
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 3.2e-27 124.8 79 70.9
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.1e-26 122.1 83 67.5
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 2.7e-26 121.7 79 65.8
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 7.9e-26 120.2 117 50.4
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.5e-24 115.2 80 66.2
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 2.5e-24 115.2 79 65.8
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 3.3e-24 114.8 80 66.2
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.3e-24 114.8 80 66.2
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.3e-24 114.8 80 66.2
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 8.2e-23 110.2 80 62.5
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 2.4e-22 108.6 80 62.5
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.4e-22 108.6 80 62.5
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 9.0e-22 106.7 74 66.2
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.6e-21 105.1 79 57.0
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 4.5e-21 104.4 79 53.2
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 3.8e-20 101.3 79 53.2
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.9e-20 100.9 59 76.3
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.9e-19 99.0 79 55.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 9.3e-19 96.7 78 55.1
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.0e-17 93.2 56 76.8
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 5.9e-13 77.4 43 81.4
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 3.2e-11 71.6 41 75.6
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 4.2e-11 71.2 35 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 3.6e-10 68.2 38 71.1
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 6.7e-09 63.9 43 62.8
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.5e-08 62.0 44 63.6


User provided reference genes

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