Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p02560 Brassica napus HOM05D001374 ORTHO05D013421 9.6e-68 260.0 128 100.0
BolC4t21900H Brassica oleracea HOM05D001374 ORTHO05D013421 9.6e-68 260.0 128 100.0
C03p83240 Brassica napus HOM05D001374 ORTHO05D013421 5.1e-53 211.1 147 77.6
BcaC02g12764 Brassica carinata HOM05D001374 ORTHO05D013421 8.2e-51 203.8 104 98.1
BolC7t43598H Brassica oleracea HOM05D001374 ORTHO05D013421 4.1e-50 201.4 104 97.1
A09p39220 Brassica napus HOM05D001374 ORTHO05D004296 2.5e-47 192.2 169 64.5
BraA09t39421Z Brassica rapa HOM05D001374 ORTHO05D004296 2.5e-47 192.2 169 64.5
C07p30590 Brassica napus HOM05D001374 ORTHO05D013421 3.5e-46 188.3 127 79.5
C05p25160 Brassica napus HOM05D001374 ORTHO05D004296 4.6e-46 188.0 169 64.5
BraA04t17049Z Brassica rapa HOM05D001374 ORTHO05D013421 1.3e-45 186.4 160 68.1
BcaC05g26473 Brassica carinata HOM05D001374 ORTHO05D004296 2.3e-45 185.7 169 63.9
BolC5t31249H Brassica oleracea HOM05D001374 ORTHO05D004296 2.3e-45 185.7 169 63.9
BcaC05g26679 Brassica carinata HOM05D001374 ORTHO05D004296 5.1e-45 184.5 172 61.6
Thhalv10006840m.g Eutrema salsugineum HOM05D001374 ORTHO05D004296 2.2e-43 179.1 172 59.9
Sp1g22870 Schrenkiella parvula HOM05D001374 ORTHO05D004296 2.6e-41 172.2 172 58.1
AT1G25350 Arabidopsis thaliana HOM05D001374 ORTHO05D004296 1.4e-39 166.4 166 56.6
Carub.0001s2516 Capsella rubella HOM05D001374 ORTHO05D004296 3.2e-39 165.2 166 55.4
AL1G39980 Arabidopsis lyrata HOM05D001374 ORTHO05D004296 7.2e-39 164.1 166 56.0
CARHR026140 Cardamine hirsuta HOM05D001374 ORTHO05D004296 3.6e-38 161.8 163 55.8
BolC3t17283H Brassica oleracea HOM05D001374 ORTHO05D013421 4.3e-36 154.8 120 70.0
Aa31LG2G6960 Aethionema arabicum HOM05D001374 ORTHO05D004296 6.3e-35 151.0 166 53.0
BcaC01g03668 Brassica carinata HOM05D001374 ORTHO05D013421 4.1e-34 148.3 137 61.3
QL01p040852 Quercus lobata HOM05D001374 ORTHO05D004296 5.3e-34 147.9 164 51.8
GSVIVG01018308001 Vitis vinifera HOM05D001374 ORTHO05D004296 5.3e-34 147.9 169 49.7
Dinv31622 Davidia involucrata HOM05D001374 ORTHO05D004296 1.2e-33 146.7 166 51.2
THA.LOC104821915 Tarenaya hassleriana HOM05D001374 ORTHO05D004296 1.5e-33 146.4 166 51.2
SalBow8G3975 Salvia bowleyana HOM05D001374 ORTHO05D004296 2.0e-33 146.0 183 46.4
SalBow8G5161 Salvia bowleyana HOM05D001374 ORTHO05D004296 2.0e-33 146.0 183 46.4
SGA_v2.0_scaffold38G14957 Striga asiatica HOM05D001374 ORTHO05D004296 7.7e-33 144.1 164 50.6
Haze_00619 Corylus avellana HOM05D001374 ORTHO05D004296 1.0e-32 143.7 164 51.2
Manes.14G104300 Manihot esculenta HOM05D001374 ORTHO05D004296 1.0e-32 143.7 161 51.6
Atru.chr11.140 Acer truncatum HOM05D001374 ORTHO05D004296 1.7e-32 142.9 164 51.2
Nitab4.5_0003867g0050 Nicotiana tabacum HOM05D001374 ORTHO05D004296 2.2e-32 142.5 165 49.7
TAR371G0094 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.2e-32 142.5 166 50.0
Manes.06G066500 Manihot esculenta HOM05D001374 ORTHO05D004296 2.9e-32 142.1 166 50.0
Thecc.07G144700 Theobroma cacao HOM05D001374 ORTHO05D004296 2.9e-32 142.1 166 48.8
Cpa.g.sc798.2 Carica papaya HOM05D001374 ORTHO05D004296 3.8e-32 141.7 164 49.4
Prupe.1G313400 Prunus persica HOM05D001374 ORTHO05D004296 3.8e-32 141.7 164 50.0
Cfa015867 Carpinus fangiana HOM05D001374 ORTHO05D004296 6.5e-32 141.0 164 50.0
Potri.010G122866 Populus trichocarpa HOM05D001374 ORTHO05D004296 6.5e-32 141.0 169 49.7
CSS0034691 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 8.5e-32 140.6 166 48.8
Duzib248G1131 Durio zibethinus HOM05D001374 ORTHO05D004296 8.5e-32 140.6 166 47.6
CiPaw.06G018700 Carya illinoinensis HOM05D001374 ORTHO05D004296 1.1e-31 140.2 164 49.4
Oeu054996.3 Olea europaea HOM05D001374 ORTHO05D004296 1.1e-31 140.2 164 50.0
TAR371G0884 Trochodendron aralioides HOM05D001374 ORTHO05D004296 1.1e-31 140.2 166 49.4
MSTRG.850 Avicennia marina HOM05D001374 ORTHO05D004296 1.4e-31 139.8 164 49.4
Hma1.2p1_0061F.1_g033680 Hydrangea macrophylla HOM05D001374 ORTHO05D004296 1.9e-31 139.4 172 49.4
Sabra08G0092800 Salix brachista HOM05D001374 ORTHO05D004296 1.9e-31 139.4 175 48.6
Ciclev10014320m.g Citrus clementina HOM05D001374 ORTHO05D004296 2.5e-31 139.0 163 50.3
Solyc05g009220.3 Solanum lycopersicum HOM05D001374 ORTHO05D004296 2.5e-31 139.0 169 47.9
Duzib251G0305 Durio zibethinus HOM05D001374 ORTHO05D004296 3.2e-31 138.7 166 47.6
MD13G1039800 Malus domestica HOM05D001374 ORTHO05D004296 3.2e-31 138.7 164 48.2
PGR102G0253 Punica granatum HOM05D001374 ORTHO05D004296 3.2e-31 138.7 163 49.1
Sopen05g004940 Solanum pennellii HOM05D001374 ORTHO05D004296 4.2e-31 138.3 169 47.9
GSVIVG01011871001 Vitis vinifera HOM05D001374 ORTHO05D004296 4.2e-31 138.3 166 47.6
Aqoxy3G00265 Aquilegia oxysepala HOM05D001374 ORTHO05D004296 7.2e-31 137.5 165 49.1
EL10Ac6g14344 Beta vulgaris HOM05D001374 ORTHO05D004296 7.2e-31 137.5 168 48.8
ClCG11G004350 Citrullus lanatus HOM05D001374 ORTHO05D004296 7.2e-31 137.5 164 49.4
FAN07G0461 Fragaria x ananassa HOM05D001374 ORTHO05D004296 7.2e-31 137.5 170 47.6
FAN17G1418 Fragaria x ananassa HOM05D001374 ORTHO05D004296 7.2e-31 137.5 170 47.1
FAN22G1881 Fragaria x ananassa HOM05D001374 ORTHO05D004296 7.2e-31 137.5 170 47.1
RcHm_v2.0_Chr4g0434881 Rosa chinensis HOM05D001374 ORTHO05D004296 7.2e-31 137.5 170 47.1
TAR371G0932 Trochodendron aralioides HOM05D001374 ORTHO05D004296 7.2e-31 137.5 167 49.7
DCAR_021035 Daucus carota HOM05D001374 ORTHO05D004296 9.4e-31 137.1 169 46.2
PGSC0003DMG400014572 Solanum tuberosum HOM05D001374 ORTHO05D004296 9.4e-31 137.1 169 47.9
MD16G1040700 Malus domestica HOM05D001374 ORTHO05D004296 1.2e-30 136.7 164 48.2
Cc11_g09920 Coffea canephora HOM05D001374 ORTHO05D004296 1.6e-30 136.3 163 50.3
MELO3C020839.2 Cucumis melo HOM05D001374 ORTHO05D004296 1.6e-30 136.3 163 49.1
Eucgr.B03004 Eucalyptus grandis HOM05D001374 ORTHO05D004296 1.6e-30 136.3 164 47.6
Lsat_1_v5_gn_2_80001 Lactuca sativa HOM05D001374 ORTHO05D004296 2.1e-30 136.0 163 48.5
TAR374G1395 Trochodendron aralioides HOM05D001374 ORTHO05D004296 2.1e-30 136.0 167 49.7
Actinidia16665 Actinidia chinensis HOM05D001374 ORTHO05D004296 2.7e-30 135.6 164 49.4
AUR62002537 Chenopodium quinoa HOM05D001374 ORTHO05D004296 2.7e-30 135.6 166 48.2
Sc14g0007390 Simmondsia chinensis HOM05D001374 ORTHO05D004296 2.7e-30 135.6 166 47.0
CAN.G610.65 Capsicum annuum HOM05D001374 ORTHO05D004296 3.6e-30 135.2 170 47.6
ClCG02G012120 Citrullus lanatus HOM05D001374 ORTHO05D004296 3.6e-30 135.2 163 48.5
FvH4_4g27080 Fragaria vesca HOM05D001374 ORTHO05D004296 3.6e-30 135.2 170 46.5
FAN12G2409 Fragaria x ananassa HOM05D001374 ORTHO05D004296 3.6e-30 135.2 170 46.5
FAN12G3668 Fragaria x ananassa HOM05D001374 ORTHO05D004296 3.6e-30 135.2 170 46.5
Oeu059498.1 Olea europaea HOM05D001374 ORTHO05D004296 3.6e-30 135.2 169 49.7
MELO3C023301.2 Cucumis melo HOM05D001374 ORTHO05D004296 4.7e-30 134.8 164 48.2
Gohir.D05G323900 Gossypium hirsutum HOM05D001374 ORTHO05D004296 4.7e-30 134.8 164 46.3
Gorai.009G347600 Gossypium raimondii HOM05D001374 ORTHO05D004296 4.7e-30 134.8 164 46.3
Rhsim09G0106300 Rhododendron simsii HOM05D001374 ORTHO05D004296 4.7e-30 134.8 175 47.4
CsaV3_2G014770 Cucumis sativus L. HOM05D001374 ORTHO05D004296 6.1e-30 134.4 164 47.6
Peaxi162Scf00753g00332 Petunia axillaris HOM05D001374 ORTHO05D004296 6.1e-30 134.4 166 46.4
Medtr1g110430 Medicago truncatula HOM05D001374 ORTHO05D004296 7.9e-30 134.0 164 48.2
Psat6g226160 Pisum sativum HOM05D001374 ORTHO05D004296 7.9e-30 134.0 164 48.2
Sed0019956 Sechium edule HOM05D001374 ORTHO05D004296 7.9e-30 134.0 165 47.9
Ca_11159_v3 Cicer arietinum L. HOM05D001374 ORTHO05D004296 1.0e-29 133.7 174 47.7
Lalb_Chr02g0145891 Lupinus albus HOM05D001374 ORTHO05D004296 1.0e-29 133.7 164 47.0
Potri.008G122200 Populus trichocarpa HOM05D001374 ORTHO05D004296 1.0e-29 133.7 161 49.7
RcHm_v2.0_Chr6g0267171 Rosa chinensis HOM05D001374 ORTHO05D004296 1.0e-29 133.7 170 45.9
vmacro10571 Vaccinium macrocarpon HOM05D001374 ORTHO05D004296 1.0e-29 133.7 161 49.1
Ah.03g138230 Amaranthus hybridus HOM05D001374 ORTHO05D004296 1.4e-29 133.3 169 45.6
CsaV3_2G016280 Cucumis sativus L. HOM05D001374 ORTHO05D004296 1.4e-29 133.3 163 47.2
Migut.O00776 Erythranthe guttata HOM05D001374 ORTHO05D004296 1.4e-29 133.3 159 47.8
Lsat_1_v5_gn_8_40760 Lactuca sativa HOM05D001374 ORTHO05D004296 1.4e-29 133.3 163 47.9
Hund20774 Selenicereus undatus HOM05D001374 ORTHO05D004296 1.8e-29 132.9 168 47.0
TWI79G1774 Tripterygium wilfordii HOM05D001374 ORTHO05D004296 1.8e-29 132.9 166 45.8
Gohir.A05G321600 Gossypium hirsutum HOM05D001374 ORTHO05D004296 2.3e-29 132.5 164 45.7
RcHm_v2.0_Chr1g0324791 Rosa chinensis HOM05D001374 ORTHO05D004296 2.3e-29 132.5 169 44.4
AUR62023655 Chenopodium quinoa HOM05D001374 ORTHO05D004296 3.0e-29 132.1 166 47.0
Migut.L01049 Erythranthe guttata HOM05D001374 ORTHO05D004296 6.7e-29 131.0 159 47.2
HanXRQChr16g0508691 Helianthus annuus HOM05D001374 ORTHO05D004296 8.8e-29 130.6 163 47.2
Nn5g28146 Nelumbo nucifera HOM05D001374 ORTHO05D004296 8.8e-29 130.6 166 46.4
CANSAT56G0741 Cannabis sativa HOM05D001374 ORTHO05D004296 1.1e-28 130.2 164 47.6
DCAR_023648 Daucus carota HOM05D001374 ORTHO05D004296 1.1e-28 130.2 173 42.8
TPR.G4913 Trifolium pratense HOM05D001374 ORTHO05D004296 1.1e-28 130.2 159 49.1
CSS0047778 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 4.4e-28 128.3 164 46.3
VMungo0720G1962 Vigna mungo HOM05D001374 ORTHO05D004296 4.4e-28 128.3 174 46.0
Sed0001283 Sechium edule HOM05D001374 ORTHO05D004296 7.4e-28 127.5 166 45.8
CiPaw.05G239400 Carya illinoinensis HOM05D001374 ORTHO05D004296 9.7e-28 127.1 168 46.4
Glyma.10G272800 Glycine max HOM05D001374 ORTHO05D004296 9.7e-28 127.1 174 46.0
AUR62002847 Chenopodium quinoa HOM05D001374 ORTHO05D004296 1.3e-27 126.7 166 45.2
Lalb_Chr06g0166001 Lupinus albus HOM05D001374 ORTHO05D004296 1.7e-27 126.3 164 45.1
PSO063G7347 Papaver somniferum HOM05D001374 ORTHO05D004296 1.7e-27 126.3 166 45.8
Phvul.007G028800 Phaseolus vulgaris HOM05D001374 ORTHO05D004296 2.8e-27 125.6 164 45.7
HanXRQChr12g0371141 Helianthus annuus HOM05D001374 ORTHO05D004296 3.7e-27 125.2 163 46.0
MSTRG.2228 Avicennia marina HOM05D001374 ORTHO05D004296 4.8e-27 124.8 164 44.5
Glyma.20G117150 Glycine max HOM05D001374 ORTHO05D004296 6.3e-27 124.4 174 45.4
Lj4g0028120 Lotus japonicus HOM05D001374 ORTHO05D004296 8.2e-27 124.0 164 45.1
ECA233G2275 Erigeron canadensis HOM05D001374 ORTHO05D004296 1.8e-26 122.9 164 43.9
arahy.Tifrunner.gnm1.ann1.VKD07K Arachis hypogaea HOM05D001374 ORTHO05D004296 3.1e-26 122.1 164 44.5
PSO782G3382 Papaver somniferum HOM05D001374 ORTHO05D004296 4.1e-26 121.7 167 45.5
arahy.Tifrunner.gnm1.ann1.DTRW9U Arachis hypogaea HOM05D001374 ORTHO05D004296 5.3e-26 121.3 164 44.5
MBI16_g23453_MAGBIO Magnolia biondii HOM05D001374 ORTHO05D004296 7.0e-26 120.9 172 44.8
C03p49890 Brassica napus HOM05D001374 ORTHO05D013421 9.1e-26 120.6 116 62.1
ATR0691G154 Amborella trichopoda HOM05D001374 ORTHO05D004296 4.5e-25 118.2 164 42.1
Sabra10G0093000 Salix brachista HOM05D001374 ORTHO05D004296 1.0e-24 117.1 154 48.1
SEGI_36555 Sequoiadendron giganteum HOM05D001374 ORTHO05D004296 1.7e-24 116.3 172 41.3
Carub.0002s1482 Capsella rubella HOM05D001374 ORTHO05D004296 3.8e-24 115.2 167 40.7
Mapoly0039s0055 Marchantia polymorpha HOM05D001374 ORTHO05D004296 1.1e-23 113.6 139 46.8
BraA05t19512Z Brassica rapa HOM05D001374 ORTHO05D013421 8.0e-22 107.5 58 91.4
Pp3c1_19680 Physcomitrium patens HOM05D001374 ORTHO05D004296 4.0e-21 105.1 163 38.7
COL.COLO4_06769 Corchorus olitorius HOM05D001374 ORTHO05D004296 5.2e-21 104.8 147 42.9
COL.COLO4_07078 Corchorus olitorius HOM05D001374 ORTHO05D004296 4.4e-20 101.7 149 42.3
AagrBONN_evm.TU.Sc2ySwM_117.3741 Anthoceros agrestis HOM05D001374 ORTHO05D004296 2.2e-19 99.4 165 35.2
CDE07G1626 Ceratophyllum demersum HOM05D001374 ORTHO05D013421 2.8e-19 99.0 137 43.8
Os05g0182800 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 8.2e-19 97.4 158 40.5
unitig_24.g30583 Utricularia gibba HOM05D001374 ORTHO05D004296 1.6e-17 93.2 112 49.1
Os01g0185200 Oryza sativa ssp. japonica HOM05D001374 ORTHO05D004296 2.0e-17 92.8 161 36.6
unitig_22.g5575 Utricularia gibba HOM05D001374 ORTHO05D004296 2.0e-17 92.8 98 52.0
Zm00001eb121810 Zea mays HOM05D001374 ORTHO05D004296 6.5e-16 87.8 161 35.4
SMO347G0322 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 1.1e-15 87.0 165 33.9
Nitab4.5_0001616g0020 Nicotiana tabacum HOM05D001374 ORTHO05D004296 5.5e-15 84.7 85 55.3
CAN.G988.6 Capsicum annuum HOM05D001374 ORTHO05D018894 1.2e-14 83.6 68 60.3
Carub.0003s3008 Capsella rubella HOM05D001374 ORTHO05D004296 1.0e-13 80.5 118 42.4
Dinv21062 Davidia involucrata HOM05D001374 ORTHO05D004296 1.0e-13 80.5 61 70.5
EL10Ac7g17806 Beta vulgaris HOM05D001374 ORTHO05D004296 2.3e-13 79.3 67 58.2
HPP92_021791 Vanilla planifolia HOM05D001374 ORTHO05D004296 2.3e-13 79.3 141 36.9
SMO361G0624 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 1.5e-12 76.6 164 29.3
RcHm_v2.0_Chr1g0324521 Rosa chinensis HOM05D001374 ORTHO05D013421 2.6e-12 75.9 67 59.7
CSS0016974 Camellia sinensis var. sinensis HOM05D001374 ORTHO05D004296 2.8e-11 72.4 53 67.9
SMO361G0577 Selaginella moellendorffii HOM05D001374 ORTHO05D004296 2.8e-11 72.4 164 29.9
AL6G31230 Arabidopsis lyrata HOM05D001374 ORTHO05D013421 6.3e-11 71.2 58 60.3
Mapoly0089s0016 Marchantia polymorpha HOM05D001374 ORTHO05D013421 8.3e-11 70.9 160 31.9
QL11p028036 Quercus lobata HOM05D000089 ORTHO05D000104 8.3e-11 70.9 48 70.8
QL09p000919 Quercus lobata HOM05D000089 ORTHO05D000104 1.1e-10 70.5 71 56.3
QL03p003288 Quercus lobata HOM05D000089 ORTHO05D000104 1.4e-10 70.1 71 56.3
AagrBONN_evm.TU.Sc2ySwM_368.245 Anthoceros agrestis HOM05D000436 ORTHO05D000678 7.0e-10 67.8 149 33.6
Cre14.g614900 Chlamydomonas reinhardtii HOM05D001374 ORTHO05D004296 2.9e-08 62.4 174 28.2
RcHm_v2.0_Chr6g0267551 Rosa chinensis HOM05D001374 ORTHO05D004296 1.6e-06 56.6 120 34.2


User provided reference genes

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