Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p88340 Brassica napus HOM05D004425 ORTHO05D005783 2.7e-117 425.2 201 100.0
BcaC03g15852 Brassica carinata HOM05D004425 ORTHO05D024261 1.7e-58 229.9 200 64.5
BolC3t15257H Brassica oleracea HOM05D004425 ORTHO05D024261 2.9e-55 219.2 185 67.6
C03p29020 Brassica napus HOM05D004425 ORTHO05D024261 1.6e-53 213.4 182 67.0
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 7.3e-46 188.0 200 55.0
BcaC08g46598 Brassica carinata HOM05D004425 ORTHO05D005783 9.5e-46 187.6 202 53.0
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 8.9e-44 181.0 201 51.2
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 2.9e-42 176.0 199 51.3
Sp5g26750 Schrenkiella parvula HOM05D004425 ORTHO05D005783 4.9e-42 175.3 182 54.9
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 7.0e-41 171.4 180 54.4
C06p45770 Brassica napus HOM05D004425 ORTHO05D005783 6.0e-40 168.3 173 54.3
BolC6t39629H Brassica oleracea HOM05D004425 ORTHO05D005783 3.9e-39 165.6 178 52.8
A05p24870 Brassica napus HOM05D004425 ORTHO05D005783 3.3e-38 162.5 218 46.8
A01p06600 Brassica napus HOM05D004425 ORTHO05D024261 2.1e-37 159.8 161 57.8
A07p37870 Brassica napus HOM05D004425 ORTHO05D005783 8.1e-37 157.9 152 55.9
BraA07t31352Z Brassica rapa HOM05D004425 ORTHO05D005783 8.1e-37 157.9 152 55.9
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 8.1e-37 157.9 203 47.3
BraA05t21374Z Brassica rapa HOM05D004425 ORTHO05D024261 1.1e-36 157.5 201 49.8
CSS0010963 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 1.1e-36 157.5 209 45.5
CSS0011525 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 3.1e-36 156.0 209 45.0
BcaC01g01120 Brassica carinata HOM05D004425 ORTHO05D095244 4.0e-36 155.6 80 90.0
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 1.3e-34 150.6 204 43.6
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 3.7e-34 149.1 208 44.2
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 6.4e-34 148.3 221 43.0
Duzib093G0931 Durio zibethinus HOM05D004425 ORTHO05D005783 8.3e-34 147.9 205 44.4
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 1.4e-33 147.1 208 42.3
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 1.9e-33 146.7 211 44.5
Gorai.005G076800 Gossypium raimondii HOM05D004425 ORTHO05D005783 3.2e-33 146.0 191 46.1
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 4.1e-33 145.6 218 42.7
PSO170G0918 Papaver somniferum HOM05D004425 ORTHO05D005783 4.1e-33 145.6 209 41.6
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 4.1e-33 145.6 198 46.5
Solyc04g072036.1 Solanum lycopersicum HOM05D004425 ORTHO05D005783 5.4e-33 145.2 196 46.4
Sopen04g028080 Solanum pennellii HOM05D004425 ORTHO05D005783 5.4e-33 145.2 195 46.7
MSTRG.972 Avicennia marina HOM05D004425 ORTHO05D005783 7.1e-33 144.8 191 45.0
Gohir.D02G068000 Gossypium hirsutum HOM05D004425 ORTHO05D005783 7.1e-33 144.8 191 46.1
PGSC0003DMG400025077 Solanum tuberosum HOM05D004425 ORTHO05D005783 2.1e-32 143.3 201 44.8
Atru.chr13.1991 Acer truncatum HOM05D004425 ORTHO05D005783 2.7e-32 142.9 219 41.6
COL.COLO4_13726 Corchorus olitorius HOM05D004425 ORTHO05D005783 2.7e-32 142.9 213 43.2
PSO210G1911 Papaver somniferum HOM05D004425 ORTHO05D005783 3.5e-32 142.5 209 41.1
DCAR_014325 Daucus carota HOM05D004425 ORTHO05D005783 6.0e-32 141.7 219 42.0
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 7.8e-32 141.4 217 41.0
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 1.0e-31 141.0 174 46.6
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 1.0e-31 141.0 181 44.2
Thecc.08G161900 Theobroma cacao HOM05D004425 ORTHO05D005783 1.0e-31 141.0 178 46.6
Nitab4.5_0003443g0070 Nicotiana tabacum HOM05D004425 ORTHO05D005783 1.3e-31 140.6 201 44.3
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 1.7e-31 140.2 203 44.3
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 2.3e-31 139.8 174 46.6
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 2.3e-31 139.8 174 46.6
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 2.3e-31 139.8 212 40.6
Gohir.A02G062300 Gossypium hirsutum HOM05D004425 ORTHO05D005783 3.0e-31 139.4 191 42.9
Prupe.8G042900 Prunus persica HOM05D004425 ORTHO05D005783 3.0e-31 139.4 157 48.4
arahy.Tifrunner.gnm1.ann1.64NVCN Arachis hypogaea HOM05D004425 ORTHO05D005783 5.1e-31 138.7 187 44.4
arahy.Tifrunner.gnm1.ann1.J67SBC Arachis hypogaea HOM05D004425 ORTHO05D005783 5.1e-31 138.7 187 44.4
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 5.1e-31 138.7 208 41.3
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 6.6e-31 138.3 208 40.9
VMungo0720G3015 Vigna mungo HOM05D004425 ORTHO05D005783 6.6e-31 138.3 212 41.0
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 8.6e-31 137.9 198 41.4
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 8.6e-31 137.9 217 40.1
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 1.5e-30 137.1 195 40.5
Nitab4.5_0003178g0010 Nicotiana tabacum HOM05D004425 ORTHO05D005783 1.9e-30 136.7 201 44.3
FAN27G1841 Fragaria x ananassa HOM05D004425 ORTHO05D005783 4.3e-30 135.6 208 40.9
Hund17360 Selenicereus undatus HOM05D004425 ORTHO05D005783 4.3e-30 135.6 174 44.3
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 5.6e-30 135.2 202 40.6
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 5.6e-30 135.2 184 44.0
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 7.3e-30 134.8 212 40.6
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 7.3e-30 134.8 212 40.6
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 7.3e-30 134.8 217 40.6
Lalb_Chr06g0161781 Lupinus albus HOM05D004425 ORTHO05D005783 7.3e-30 134.8 173 45.1
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 7.3e-30 134.8 184 43.5
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 9.5e-30 134.4 203 41.4
Ah.05g169010 Amaranthus hybridus HOM05D004425 ORTHO05D005783 1.2e-29 134.0 188 42.6
CAN.G1183.17 Capsicum annuum HOM05D004425 ORTHO05D005783 1.6e-29 133.7 203 41.4
Migut.C00150 Erythranthe guttata HOM05D004425 ORTHO05D005783 1.6e-29 133.7 178 43.3
Lsat_1_v5_gn_9_42380 Lactuca sativa HOM05D004425 ORTHO05D005783 2.1e-29 133.3 197 42.1
MBI01_g29006_MAGBIO Magnolia biondii HOM05D004425 ORTHO05D005783 2.1e-29 133.3 205 41.5
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 2.8e-29 132.9 182 42.9
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 2.8e-29 132.9 203 40.9
Peaxi162Scf00360g00089 Petunia axillaris HOM05D004425 ORTHO05D005783 3.6e-29 132.5 181 44.8
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 3.6e-29 132.5 179 43.6
Migut.C00138 Erythranthe guttata HOM05D004425 ORTHO05D005783 6.2e-29 131.7 178 42.7
SalBow7G3651 Salvia bowleyana HOM05D004425 ORTHO05D005783 8.1e-29 131.3 186 43.5
DCAR_001192 Daucus carota HOM05D004425 ORTHO05D005783 1.1e-28 131.0 201 38.3
Potri.005G197900 Populus trichocarpa HOM05D004425 ORTHO05D005783 1.1e-28 131.0 202 40.6
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 1.8e-28 130.2 158 46.2
Aqoxy5G02018 Aquilegia oxysepala HOM05D004425 ORTHO05D005783 2.4e-28 129.8 184 41.8
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 2.4e-28 129.8 192 42.7
SGA_v2.0_scaffold133G34677 Striga asiatica HOM05D004425 ORTHO05D005783 3.1e-28 129.4 188 42.6
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 4.0e-28 129.0 197 40.6
MD05G1034600 Malus domestica HOM05D004425 ORTHO05D005783 1.2e-27 127.5 218 38.5
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 1.2e-27 127.5 200 39.5
Sabra05G0150700 Salix brachista HOM05D004425 ORTHO05D005783 2.0e-27 126.7 159 44.0
Lj5g0021674 Lotus japonicus HOM05D004425 ORTHO05D005783 2.6e-27 126.3 222 37.8
Ca_10656_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 4.4e-27 125.6 174 43.1
Sed0006049 Sechium edule HOM05D004425 ORTHO05D005783 4.4e-27 125.6 187 39.6
MELO3C019971.2 Cucumis melo HOM05D004425 ORTHO05D005783 5.8e-27 125.2 184 41.3
TWI60G0364 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 5.8e-27 125.2 200 38.5
Potri.002G063400 Populus trichocarpa HOM05D004425 ORTHO05D005783 7.6e-27 124.8 217 36.4
HanXRQChr11g0320171 Helianthus annuus HOM05D004425 ORTHO05D005783 9.9e-27 124.4 201 38.8
Psat6g190160 Pisum sativum HOM05D004425 ORTHO05D005783 1.3e-26 124.0 227 37.4
CsaV3_6G004950 Cucumis sativus L. HOM05D004425 ORTHO05D005783 2.9e-26 122.9 184 41.3
TPR.G17013 Trifolium pratense HOM05D004425 ORTHO05D005783 3.8e-26 122.5 215 38.1
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 4.9e-26 122.1 147 49.7
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 4.9e-26 122.1 201 36.8
Phvul.004G089600 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 8.4e-26 121.3 155 43.9
C01p29530 Brassica napus HOM05D004425 ORTHO05D042383 3.2e-25 119.4 154 48.1
BolC1t02895H Brassica oleracea HOM05D004425 ORTHO05D042383 3.2e-25 119.4 154 48.1
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 9.2e-25 117.9 113 51.3
Lalb_Chr19g0130031 Lupinus albus HOM05D004425 ORTHO05D005783 1.2e-24 117.5 158 41.8
HPP92_022945 Vanilla planifolia HOM05D004425 ORTHO05D005783 1.2e-24 117.5 217 34.6
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 4.6e-24 115.5 185 39.5
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 1.0e-23 114.4 180 42.2
HPP92_022923 Vanilla planifolia HOM05D004425 ORTHO05D005783 1.7e-23 113.6 113 51.3
Oeu061448.2 Olea europaea HOM05D004425 ORTHO05D005783 2.3e-23 113.2 213 38.5
unitig_37.g13122 Utricularia gibba HOM05D004425 ORTHO05D005783 3.9e-23 112.5 191 40.3
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 5.1e-23 112.1 171 39.2
Lalb_Chr01g0009831 Lupinus albus HOM05D004425 ORTHO05D005783 6.6e-23 111.7 160 41.2
arahy.Tifrunner.gnm1.ann1.9T1T9I Arachis hypogaea HOM05D004425 ORTHO05D005783 2.5e-22 109.8 206 34.5
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 3.6e-21 105.9 180 41.1
BcaC05g28762 Brassica carinata HOM05D004425 ORTHO05D005783 4.7e-21 105.5 51 96.1
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 2.4e-20 103.2 159 39.6
arahy.Tifrunner.gnm1.ann1.GMAE2R Arachis hypogaea HOM05D004425 ORTHO05D005783 4.0e-20 102.4 179 36.9
ECA232G4004 Erigeron canadensis HOM05D004425 ORTHO05D005783 1.2e-19 100.9 191 35.1
Lj7A385T59 Lonicera japonica HOM05D004425 ORTHO05D005783 2.0e-19 100.1 172 36.6
SEGI_21205 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 1.2e-16 90.9 117 42.7
BcaB07g33352 Brassica carinata HOM05D004425 ORTHO05D005783 7.8e-16 88.2 132 45.5
EL10Ac1g01372 Beta vulgaris HOM05D004425 ORTHO05D005783 1.7e-15 87.0 125 40.0
C03p12860 Brassica napus HOM05D004425 ORTHO05D005783 1.7e-15 87.0 102 51.0
Os05g0535800 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 1.7e-15 87.0 117 41.9
Zm00001eb294080 Zea mays HOM05D004425 ORTHO05D005783 4.3e-14 82.4 173 33.5
MD10G1037300 Malus domestica HOM05D004425 ORTHO05D005783 3.1e-12 76.3 180 33.9
Zm00001eb160710 Zea mays HOM05D004425 ORTHO05D005783 2.2e-10 70.1 45 71.1
Os01g0589000 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 6.4e-10 68.6 45 68.9
HPP92_022935 Vanilla planifolia HOM05D004425 ORTHO05D005783 3.5e-08 62.8 150 27.3
MD10G1036900 Malus domestica HOM05D004425 ORTHO05D005783 6.0e-08 62.0 41 73.2
Mapoly0036s0031 Marchantia polymorpha HOM05D004425 ORTHO05D005783 1.1e-06 57.8 115 33.9
C05p26970 Brassica napus HOM05D004425 ORTHO05D005783 3.3e-06 56.2 106 34.9


User provided reference genes

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