Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 3486.8 1910 100.0
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 3436.7 1910 99.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 3411.3 1912 97.5
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 3359.3 1913 95.9
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 3359.3 1913 95.9
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 3173.3 1916 90.7
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2926.3 1808 86.1
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 2924.0 1853 85.1
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 2900.5 1852 84.3
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 2893.2 1849 83.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 2829.7 1802 85.0
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 2802.3 1839 82.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 2783.8 1807 83.4
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 2729.5 1855 80.1
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 2727.2 1809 82.7
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 2337.8 1806 72.6
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2334.7 1874 69.5
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 2282.3 1453 84.3
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2238.0 1880 67.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 2071.2 1428 81.2
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1997.6 1891 59.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1958.7 1860 59.2
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1952.9 1886 58.3
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1950.6 1865 58.8
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1950.3 1886 58.2
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1933.7 1854 58.4
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1924.4 1890 57.4
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1914.8 1911 56.7
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1903.6 1857 57.6
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1902.5 1907 58.0
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1894.8 1911 58.1
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1891.7 1844 58.2
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1884.0 1878 57.8
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1883.6 1878 57.7
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1882.5 1877 57.5
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1882.1 1908 57.4
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1881.7 1886 57.6
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1880.1 1877 57.5
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1871.3 1937 55.9
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1870.1 1893 56.8
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1869.7 1847 57.7
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1866.7 1884 56.8
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1866.3 1893 56.3
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1858.6 1894 56.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1852.8 1895 56.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1852.0 1900 55.9
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1850.1 1882 56.9
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1847.8 1935 56.1
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1847.0 1889 57.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1845.5 1853 56.6
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1841.2 1898 55.3
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1834.7 1875 55.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1829.3 1802 57.3
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1828.5 1853 56.1
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1828.1 1889 55.3
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1827.4 1874 56.1
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1826.6 1892 57.1
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1824.3 1868 56.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1820.1 1825 56.8
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1820.1 1910 56.2
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1817.0 1924 54.7
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1810.4 1868 56.2
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1808.1 2029 53.5
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1807.3 1915 54.4
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1804.6 1843 56.3
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1803.1 1881 55.5
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1796.6 1886 54.5
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1780.0 1942 54.6
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1779.6 1761 58.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1779.6 1856 55.9
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1779.2 1896 54.7
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1778.5 1926 54.3
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1774.6 1833 54.9
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1766.5 1815 55.6
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1765.7 1884 54.6
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1763.0 1843 56.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1753.8 1882 53.9
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1753.4 1891 54.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1752.6 1879 55.2
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1748.0 1890 53.8
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1741.1 1881 53.6
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1731.1 1863 54.4
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1729.1 1893 53.2
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1722.6 1896 53.7
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1718.4 1890 54.2
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1718.0 1799 54.0
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1716.8 1845 53.7
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1714.1 1862 54.7
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1710.3 1859 53.3
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1709.1 1877 53.3
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1708.0 1870 53.4
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1705.6 1870 53.5
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1694.5 1889 52.5
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1687.2 1951 52.0
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1679.5 1810 53.7
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1669.1 1906 52.9
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1647.9 1894 52.2
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1635.5 1914 51.5
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1622.4 1819 51.8
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1615.1 1848 51.6
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1590.9 1919 49.7
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1543.5 1895 48.1
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1531.2 1902 48.2
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1520.8 1923 48.9
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1513.8 1724 51.4
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1478.0 1728 50.6
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1442.9 1940 47.1
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1421.4 1883 46.5
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1400.6 1876 46.6
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1318.9 1999 43.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1307.0 1291 57.2
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1294.6 1916 43.4
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1294.6 1916 43.4
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1280.4 1858 43.4
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1228.4 1863 44.4
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1181.4 1258 55.6
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1127.1 1549 47.6
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1111.3 1216 54.6
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1109.4 1771 41.0
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1109.0 1853 40.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.9e-285 986.5 1052 54.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 4.8e-272 942.6 1387 46.4
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 9.4e-260 901.7 1642 39.6
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 5.3e-255 885.9 935 53.9
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.8e-247 860.9 1023 50.5
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.0e-235 818.9 1781 34.4
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 8.8e-234 815.5 1447 41.3
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 6.1e-227 792.7 905 53.0
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.2e-222 778.5 822 54.4
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.2e-216 757.7 872 51.1
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.0e-214 751.1 799 53.6
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 3.0e-165 587.8 437 73.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.1e-156 559.3 496 58.1
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 2.7e-150 538.1 770 44.2
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.7e-149 533.5 704 45.9
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 5.7e-148 530.4 700 46.3
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.8e-138 498.8 497 53.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 6.1e-126 457.2 660 44.5
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-124 452.6 453 58.9
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 7.7e-113 413.7 439 53.1
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-111 408.7 437 51.7
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.9e-104 384.8 421 52.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.0e-101 376.7 1232 27.4
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.7e-86 324.7 596 36.6
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 1.1e-85 323.6 439 45.6
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.1e-74 284.3 443 39.3
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 8.1e-70 270.8 2067 21.4
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.0e-56 227.3 163 68.1
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.8e-51 208.8 859 27.1
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.0e-48 199.1 406 36.2
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 1.1e-47 197.2 256 45.3
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.3e-47 195.3 235 52.8
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.7e-43 183.3 149 67.8
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.3e-35 157.1 285 43.2
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.3e-32 146.4 77 88.3
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 5.9e-20 105.1 177 41.2
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 2.7e-12 79.7 57 61.4
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 7.7e-12 78.2 108 43.5
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 4.7e-09 68.9 82 47.6
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 3.7e-06 59.3 46 60.9
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.8e-06 58.9 42 54.8
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 8.3e-06 58.2 76 47.4


User provided reference genes

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