Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p79540 Brassica napus HOM05D003382 ORTHO05D003930 3.4e-39 164.5 80 100.0
BolC3t20205H Brassica oleracea HOM05D003382 ORTHO05D003930 1.4e-32 142.5 84 84.5
BcaC01g00418 Brassica carinata HOM05D003382 ORTHO05D003930 2.0e-26 122.1 59 96.6
BcaNung02528 Brassica carinata HOM05D003382 ORTHO05D003930 2.8e-17 91.7 110 52.7
C01p01910 Brassica napus HOM05D003382 ORTHO05D003930 2.8e-17 91.7 110 52.7
Sp7g34880 Schrenkiella parvula HOM05D003382 ORTHO05D003930 4.8e-17 90.9 109 53.2
BraA01t00166Z Brassica rapa HOM05D003382 ORTHO05D003930 6.3e-17 90.5 110 50.9
Thhalv10024924m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 1.4e-16 89.4 107 52.3
Aa31LG6G14090 Aethionema arabicum HOM05D003382 ORTHO05D003930 1.8e-16 89.0 114 49.1
BolC1t00183H Brassica oleracea HOM05D003382 ORTHO05D003930 3.5e-15 84.7 54 79.6
Carub.0007s0306 Capsella rubella HOM05D003382 ORTHO05D003930 7.7e-15 83.6 60 70.0
COL.COLO4_11466 Corchorus olitorius HOM05D003382 ORTHO05D003930 1.3e-14 82.8 104 47.1
AL7G13650 Arabidopsis lyrata HOM05D003382 ORTHO05D003930 1.7e-14 82.4 54 75.9
ECA232G1178 Erigeron canadensis HOM05D003382 ORTHO05D003930 1.7e-14 82.4 86 51.2
Solyc11g011850.2 Solanum lycopersicum HOM05D003382 ORTHO05D003930 1.7e-14 82.4 104 48.1
Duzib264G1059 Durio zibethinus HOM05D003382 ORTHO05D003930 2.9e-14 81.6 103 47.6
Gohir.A11G196300 Gossypium hirsutum HOM05D003382 ORTHO05D003930 2.9e-14 81.6 103 46.6
THA.LOC104807598 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 2.9e-14 81.6 106 46.2
AT4G36890 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 3.8e-14 81.3 56 71.4
Gohir.D11G202200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 3.8e-14 81.3 103 45.6
Gorai.003G026800 Gossypium raimondii HOM05D003382 ORTHO05D003930 3.8e-14 81.3 103 47.6
Gorai.007G216800 Gossypium raimondii HOM05D003382 ORTHO05D003930 3.8e-14 81.3 103 46.6
Sopen11g006680 Solanum pennellii HOM05D003382 ORTHO05D003930 3.8e-14 81.3 104 47.1
Thecc.01G062100 Theobroma cacao HOM05D003382 ORTHO05D003930 3.8e-14 81.3 103 46.6
Sabra05G0112900 Salix brachista HOM05D003382 ORTHO05D003930 5.0e-14 80.9 106 44.3
Aqoxy5G01170 Aquilegia oxysepala HOM05D003382 ORTHO05D003930 6.5e-14 80.5 110 42.7
A01p01740 Brassica napus HOM05D003382 ORTHO05D003930 8.5e-14 80.1 50 80.0
A07p16740 Brassica napus HOM05D003382 ORTHO05D003930 8.5e-14 80.1 101 45.5
Duzib147G0315 Durio zibethinus HOM05D003382 ORTHO05D003930 8.5e-14 80.1 103 46.6
Gohir.A02G155500 Gossypium hirsutum HOM05D003382 ORTHO05D003930 8.5e-14 80.1 103 46.6
Lj4g0013634 Lotus japonicus HOM05D003382 ORTHO05D003930 8.5e-14 80.1 101 48.5
PGSC0003DMG400013327 Solanum tuberosum HOM05D003382 ORTHO05D003930 8.5e-14 80.1 104 47.1
BraA07t29399Z Brassica rapa HOM05D003382 ORTHO05D003930 1.1e-13 79.7 101 47.5
Dinv30023 Davidia involucrata HOM05D003382 ORTHO05D003930 1.5e-13 79.3 62 61.3
BcaC06g34805 Brassica carinata HOM05D003382 ORTHO05D003930 1.9e-13 79.0 105 43.8
C07p24470 Brassica napus HOM05D003382 ORTHO05D003930 1.9e-13 79.0 105 43.8
BolC7t42967H Brassica oleracea HOM05D003382 ORTHO05D003930 1.9e-13 79.0 105 43.8
Eucgr.I00880 Eucalyptus grandis HOM05D003382 ORTHO05D003930 2.5e-13 78.6 107 43.0
Glyma.16G095800 Glycine max HOM05D003382 ORTHO05D003930 2.5e-13 78.6 102 46.1
Glyma.17G168400 Glycine max HOM05D003382 ORTHO05D003930 2.5e-13 78.6 102 46.1
Nitab4.5_0002465g0060 Nicotiana tabacum HOM05D003382 ORTHO05D003930 2.5e-13 78.6 106 45.3
Cpa.g.sc55.103 Carica papaya HOM05D003382 ORTHO05D003930 3.2e-13 78.2 104 47.1
Glyma.01G189200 Glycine max HOM05D003382 ORTHO05D003930 3.2e-13 78.2 100 45.0
Gohir.D03G025200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 4.2e-13 77.8 103 46.6
PGR004G0325 Punica granatum HOM05D003382 ORTHO05D003930 4.2e-13 77.8 104 46.2
VMungo1215G2685 Vigna mungo HOM05D003382 ORTHO05D003930 4.2e-13 77.8 100 44.0
FvH4_1g16500 Fragaria vesca HOM05D003382 ORTHO05D003930 5.5e-13 77.4 128 40.6
FAN19G0190 Fragaria x ananassa HOM05D003382 ORTHO05D003930 5.5e-13 77.4 128 40.6
FAN23G3096 Fragaria x ananassa HOM05D003382 ORTHO05D003930 5.5e-13 77.4 128 40.6
FAN26G1389 Fragaria x ananassa HOM05D003382 ORTHO05D003930 5.5e-13 77.4 128 40.6
FAN28G1977 Fragaria x ananassa HOM05D003382 ORTHO05D003930 5.5e-13 77.4 128 40.6
FAN28G2539 Fragaria x ananassa HOM05D003382 ORTHO05D003930 5.5e-13 77.4 128 40.6
Nitab4.5_0002214g0040 Nicotiana tabacum HOM05D003382 ORTHO05D003930 5.5e-13 77.4 104 45.2
Phvul.002G016000 Phaseolus vulgaris HOM05D003382 ORTHO05D003930 5.5e-13 77.4 100 46.0
BcaB02g09942 Brassica carinata HOM05D003382 ORTHO05D003930 7.2e-13 77.0 106 44.3
CSS0022388 Camellia sinensis var. sinensis HOM05D003382 ORTHO05D003930 7.2e-13 77.0 105 45.7
CARHR245620 Cardamine hirsuta HOM05D003382 ORTHO05D003930 7.2e-13 77.0 51 74.5
Lalb_Chr05g0213401 Lupinus albus HOM05D003382 ORTHO05D003930 7.2e-13 77.0 104 45.2
MD15G1287400 Malus domestica HOM05D003382 ORTHO05D003930 7.2e-13 77.0 106 44.3
THA.LOC104819856 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 7.2e-13 77.0 56 66.1
arahy.Tifrunner.gnm1.ann1.27CBEW Arachis hypogaea HOM05D003382 ORTHO05D003930 9.4e-13 76.6 102 43.1
arahy.Tifrunner.gnm1.ann1.S4MMCZ Arachis hypogaea HOM05D003382 ORTHO05D003930 9.4e-13 76.6 102 43.1
CAN.G222.166 Capsicum annuum HOM05D003382 ORTHO05D003930 9.4e-13 76.6 104 46.2
Dinv26854 Davidia involucrata HOM05D003382 ORTHO05D003930 9.4e-13 76.6 64 57.8
Lalb_Chr16g0378671 Lupinus albus HOM05D003382 ORTHO05D003930 9.4e-13 76.6 104 44.2
Actinidia03805 Actinidia chinensis HOM05D003382 ORTHO05D003930 1.2e-12 76.3 104 45.2
Duzib187G0504 Durio zibethinus HOM05D003382 ORTHO05D003930 1.2e-12 76.3 102 45.1
Glyma.11G053000 Glycine max HOM05D003382 ORTHO05D003930 1.2e-12 76.3 100 44.0
Medtr4g094912 Medicago truncatula HOM05D003382 ORTHO05D003930 1.2e-12 76.3 56 64.3
Psat0s1867g0120 Pisum sativum HOM05D003382 ORTHO05D003930 1.2e-12 76.3 105 45.7
Rhsim10G0113400 Rhododendron simsii HOM05D003382 ORTHO05D003930 1.2e-12 76.3 59 59.3
THA.LOC104827351 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 1.2e-12 76.3 57 64.9
CANSAT25G0401 Cannabis sativa HOM05D003382 ORTHO05D003930 1.6e-12 75.9 108 43.5
RcHm_v2.0_Chr2g0106411 Rosa chinensis HOM05D003382 ORTHO05D003930 1.6e-12 75.9 128 40.6
Actinidia16465 Actinidia chinensis HOM05D003382 ORTHO05D003930 2.1e-12 75.5 76 52.6
AT5G67230 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 2.1e-12 75.5 61 59.0
CARHR280400 Cardamine hirsuta HOM05D003382 ORTHO05D003930 2.1e-12 75.5 105 41.9
Manes.12G107600 Manihot esculenta HOM05D003382 ORTHO05D003930 2.7e-12 75.1 105 41.9
TPR.G26871 Trifolium pratense HOM05D003382 ORTHO05D003930 2.7e-12 75.1 105 44.8
vmacro05261 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 2.7e-12 75.1 59 61.0
TPR.G14589 Trifolium pratense HOM05D003382 ORTHO05D003930 3.6e-12 74.7 56 62.5
TWI73G0794 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 4.7e-12 74.3 46 71.7
VMungo0251G2741 Vigna mungo HOM05D003382 ORTHO05D003930 4.7e-12 74.3 93 45.2
Ciclev10025401m.g Citrus clementina HOM05D003382 ORTHO05D003930 6.1e-12 73.9 58 62.1
QL06p040205 Quercus lobata HOM05D003382 ORTHO05D003930 6.1e-12 73.9 46 71.7
TAR381G0691 Trochodendron aralioides HOM05D003382 ORTHO05D003930 8.0e-12 73.6 59 59.3
Lj2g0012816 Lotus japonicus HOM05D003382 ORTHO05D003930 1.0e-11 73.2 100 44.0
Prupe.6G230500 Prunus persica HOM05D003382 ORTHO05D003930 1.0e-11 73.2 45 71.1
Carub.0008s2728 Capsella rubella HOM05D003382 ORTHO05D003930 1.4e-11 72.8 60 58.3
HanXRQChr15g0491931 Helianthus annuus HOM05D003382 ORTHO05D003930 1.4e-11 72.8 108 41.7
Lalb_Chr09g0323331 Lupinus albus HOM05D003382 ORTHO05D003930 1.4e-11 72.8 58 58.6
HanXRQChr14g0460431 Helianthus annuus HOM05D003382 ORTHO05D003930 1.8e-11 72.4 64 53.1
TAR628G1387 Trochodendron aralioides HOM05D003382 ORTHO05D003930 1.8e-11 72.4 59 57.6
Cfa004049 Carpinus fangiana HOM05D003382 ORTHO05D003930 2.3e-11 72.0 46 67.4
Haze_15362 Corylus avellana HOM05D003382 ORTHO05D003930 2.3e-11 72.0 46 67.4
Hma1.2p1_2648F.1_g326090 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 2.3e-11 72.0 48 68.8
MD02G1177600 Malus domestica HOM05D003382 ORTHO05D003930 2.3e-11 72.0 45 68.9
Potri.005G141500 Populus trichocarpa HOM05D003382 ORTHO05D003930 2.3e-11 72.0 61 57.4
vmacro17969 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 2.3e-11 72.0 105 42.9
Gorai.004G051000 Gossypium raimondii HOM05D003382 ORTHO05D003930 3.0e-11 71.6 104 42.3
Hma1.2p1_0017F.1_g011810 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 3.0e-11 71.6 44 70.5
Potri.007G047500 Populus trichocarpa HOM05D003382 ORTHO05D003930 3.0e-11 71.6 44 70.5
Sabra07G0042400 Salix brachista HOM05D003382 ORTHO05D003930 3.0e-11 71.6 44 70.5
Atru.chr3.266 Acer truncatum HOM05D003382 ORTHO05D003930 4.0e-11 71.2 53 58.5
Lj4A155G86 Lonicera japonica HOM05D003382 ORTHO05D003930 4.0e-11 71.2 59 59.3
Manes.13G119600 Manihot esculenta HOM05D003382 ORTHO05D003930 4.0e-11 71.2 44 68.2
TWI09G1091 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 4.0e-11 71.2 44 70.5
CiPaw.01G014100 Carya illinoinensis HOM05D003382 ORTHO05D003930 5.2e-11 70.9 46 65.2
PSO541G0593 Papaver somniferum HOM05D003382 ORTHO05D003930 5.2e-11 70.9 48 66.7
Sp2g29440 Schrenkiella parvula HOM05D003382 ORTHO05D003930 5.2e-11 70.9 57 57.9
TAR376G0471 Trochodendron aralioides HOM05D003382 ORTHO05D003930 5.2e-11 70.9 59 54.2
Cc07_g06350 Coffea canephora HOM05D003382 ORTHO05D003930 6.7e-11 70.5 65 53.8
Sed0001836 Sechium edule HOM05D003382 ORTHO05D003930 6.7e-11 70.5 53 58.5
Sed0013280 Sechium edule HOM05D003382 ORTHO05D003930 6.7e-11 70.5 53 58.5
CiPaw.02G007100 Carya illinoinensis HOM05D003382 ORTHO05D003930 8.8e-11 70.1 58 56.9
MELO3C007577.2 Cucumis melo HOM05D003382 ORTHO05D003930 8.8e-11 70.1 53 58.5
Psat2g028760 Pisum sativum HOM05D003382 ORTHO05D003930 8.8e-11 70.1 45 66.7
SGA_v2.0_scaffold143G35795 Striga asiatica HOM05D003382 ORTHO05D003930 8.8e-11 70.1 54 63.0
GSVIVG01022064001 Vitis vinifera HOM05D003382 ORTHO05D003930 8.8e-11 70.1 44 70.5
Aa31LG1G15760 Aethionema arabicum HOM05D003382 ORTHO05D003930 1.1e-10 69.7 44 68.2
ClCG01G016990 Citrullus lanatus HOM05D003382 ORTHO05D003930 1.1e-10 69.7 53 58.5
ECA238G0958 Erigeron canadensis HOM05D003382 ORTHO05D003930 1.1e-10 69.7 74 50.0
Lsat_1_v5_gn_4_164401 Lactuca sativa HOM05D003382 ORTHO05D003930 1.1e-10 69.7 67 47.8
PSO170G3452 Papaver somniferum HOM05D003382 ORTHO05D003930 1.1e-10 69.7 59 52.5
PSO210G2217 Papaver somniferum HOM05D003382 ORTHO05D003930 2.0e-10 68.9 59 50.8
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 2.0e-10 68.9 62 53.2
Oeu009828.1 Olea europaea HOM05D003382 ORTHO05D003930 2.6e-10 68.6 42 71.4
PSO675G2844 Papaver somniferum HOM05D003382 ORTHO05D003930 2.6e-10 68.6 52 57.7
SHI34083 Sapria himalayana HOM05D003382 ORTHO05D003930 2.6e-10 68.6 57 56.1
unitig_21.g20471 Utricularia gibba HOM05D003382 ORTHO05D003930 2.6e-10 68.6 42 69.0
Ca_22129_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 3.3e-10 68.2 56 57.1
CsaV3_6G043470 Cucumis sativus L. HOM05D003382 ORTHO05D003930 3.3e-10 68.2 53 58.5
Thhalv10004084m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 3.3e-10 68.2 50 64.0
Lj7A75T29 Lonicera japonica HOM05D003382 ORTHO05D003930 3.3e-10 68.2 43 72.1
Lj7A81T14 Lonicera japonica HOM05D003382 ORTHO05D003930 3.3e-10 68.2 43 72.1
Ca_24746_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 4.4e-10 67.8 44 65.9
unitig_744.g24374 Utricularia gibba HOM05D003382 ORTHO05D003930 4.4e-10 67.8 42 64.3
CDE01G0400 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 5.7e-10 67.4 50 60.0
CDE02G3038 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 5.7e-10 67.4 50 60.0
Migut.H00405 Erythranthe guttata HOM05D003382 ORTHO05D003930 5.7e-10 67.4 42 66.7
Sc03g0001810 Simmondsia chinensis HOM05D003382 ORTHO05D003930 5.7e-10 67.4 63 49.2
TAR625G0350 Trochodendron aralioides HOM05D003382 ORTHO05D003930 5.7e-10 67.4 44 61.4
Migut.L00178 Erythranthe guttata HOM05D003382 ORTHO05D003930 7.5e-10 67.0 42 69.0
Medtr5g016600 Medicago truncatula HOM05D003382 ORTHO05D003930 7.5e-10 67.0 44 63.6
Oeu013240.1 Olea europaea HOM05D003382 ORTHO05D003930 7.5e-10 67.0 44 65.9
Oeu014792.2 Olea europaea HOM05D003382 ORTHO05D003930 7.5e-10 67.0 44 65.9
Rhsim08G0098200 Rhododendron simsii HOM05D003382 ORTHO05D003930 9.7e-10 66.6 58 55.2
Lsat_1_v5_gn_2_85701 Lactuca sativa HOM05D003382 ORTHO05D003930 1.3e-09 66.2 44 63.6
Zm00001eb225770 Zea mays HOM05D003382 ORTHO05D003930 1.3e-09 66.2 43 62.8
EL10Ac6g15703 Beta vulgaris HOM05D003382 ORTHO05D003930 1.7e-09 65.9 103 39.8
Migut.C00421 Erythranthe guttata HOM05D003382 ORTHO05D003930 1.7e-09 65.9 83 45.8
Zm00001eb273460 Zea mays HOM05D003382 ORTHO05D003930 1.7e-09 65.9 43 60.5
ATR0762G014 Amborella trichopoda HOM05D003382 ORTHO05D003930 2.2e-09 65.5 47 57.4
MSTRG.3440 Avicennia marina HOM05D003382 ORTHO05D003930 2.2e-09 65.5 44 61.4
DCAR_021478 Daucus carota HOM05D003382 ORTHO05D003930 2.2e-09 65.5 48 62.5
DCAR_025752 Daucus carota HOM05D003382 ORTHO05D003930 2.2e-09 65.5 47 61.7
SEGI_35989 Sequoiadendron giganteum HOM05D003382 ORTHO05D003930 2.2e-09 65.5 58 50.0
SGA_v2.0_scaffold15G07357 Striga asiatica HOM05D003382 ORTHO05D003930 2.8e-09 65.1 42 64.3
MSTRG.15375 Avicennia marina HOM05D003382 ORTHO05D003930 3.7e-09 64.7 55 50.9
SMO172G0036 Selaginella moellendorffii HOM05D003382 ORTHO05D003930 3.7e-09 64.7 58 51.7
Hund16361 Selenicereus undatus HOM05D003382 ORTHO05D003930 4.8e-09 64.3 58 50.0
AUR62038239 Chenopodium quinoa HOM05D003382 ORTHO05D003930 1.1e-08 63.2 65 49.2
HanXRQChr01g0030391 Helianthus annuus HOM05D003382 ORTHO05D003930 1.1e-08 63.2 46 56.5
Peaxi162Scf00078g01420 Petunia axillaris HOM05D003382 ORTHO05D003930 1.4e-08 62.8 95 41.1
HanXRQChr01g0004101 Helianthus annuus HOM05D003382 ORTHO05D003930 1.8e-08 62.4 85 41.2
AUR62003925 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.4e-08 62.0 44 61.4
Eucgr.H02219 Eucalyptus grandis HOM05D003382 ORTHO05D003930 2.4e-08 62.0 44 59.1
AagrBONN_evm.TU.Sc2ySwM_369.389 Anthoceros agrestis HOM05D003382 ORTHO05D003930 1.2e-07 59.7 47 51.1
BolC7t42965H Brassica oleracea HOM05D028998 ORTHO05D027508 1.2e-07 59.7 54 55.6
Sc07g0000690 Simmondsia chinensis HOM05D003382 ORTHO05D003930 1.6e-07 59.3 46 52.2
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.7e-07 58.5 44 59.1
Pp3c15_16210 Physcomitrium patens HOM05D003382 ORTHO05D003930 2.7e-07 58.5 50 50.0
Dinv06373 Davidia involucrata HOM05D003382 ORTHO05D003930 3.5e-07 58.2 51 56.9
C07p24450 Brassica napus HOM05D028998 ORTHO05D027508 4.5e-07 57.8 54 53.7
Pp3c18_10000 Physcomitrium patens HOM05D003382 ORTHO05D003930 1.7e-06 55.8 53 47.2
Mapoly0004s0253 Marchantia polymorpha HOM05D003382 ORTHO05D003930 5.0e-06 54.3 58 39.7
Pp3c9_16190 Physcomitrium patens HOM05D003382 ORTHO05D003930 6.5e-06 53.9 44 50.0


User provided reference genes

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