Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 3.9e-204 714.5 351 100.0
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 2.7e-165 585.5 436 71.3
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 8.0e-165 583.9 439 71.1
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 1.7e-162 576.2 439 70.6
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 6.3e-162 574.3 443 70.2
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 8.2e-162 573.9 441 70.3
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 8.2e-162 573.9 439 70.4
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 3.1e-161 572.0 443 69.8
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 3.1e-161 572.0 442 69.9
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 1.2e-160 570.1 439 69.9
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 2.0e-160 569.3 443 69.5
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 2.0e-160 569.3 439 69.7
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 2.6e-160 568.9 444 69.6
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 4.5e-160 568.2 439 69.9
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 2.7e-157 558.9 442 68.6
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.0e-156 557.0 442 68.1
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 4.0e-156 555.1 442 68.3
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 2.0e-155 552.7 442 68.3
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 1.0e-151 540.4 412 71.4
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 1.1e-150 537.0 414 69.6
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 5.5e-150 534.6 495 60.8
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 2.1e-149 532.7 278 92.8
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 7.7e-144 514.2 442 63.3
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 8.0e-133 477.6 435 60.0
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.2e-131 473.8 435 59.5
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 4.4e-131 471.9 437 60.0
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 5.8e-131 471.5 443 59.1
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 9.8e-131 470.7 442 59.7
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 1.7e-130 469.9 439 60.6
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 3.7e-130 468.8 441 60.1
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 3.7e-130 468.8 440 59.5
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 4.9e-130 468.4 440 58.6
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 1.1e-129 467.2 439 58.8
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.1e-129 467.2 420 61.0
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.4e-129 466.8 441 59.2
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.2e-129 465.7 410 61.5
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.2e-129 465.7 410 61.5
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 3.2e-129 465.7 444 57.7
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.2e-129 465.7 417 60.7
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 3.2e-129 465.7 417 60.7
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 4.1e-129 465.3 431 58.0
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 5.4e-129 464.9 417 60.7
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 5.4e-129 464.9 440 58.6
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 5.4e-129 464.9 408 60.8
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 5.4e-129 464.9 412 60.7
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 7.0e-129 464.5 448 59.2
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 9.2e-129 464.2 439 57.9
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.2e-128 463.8 439 58.1
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.2e-128 463.8 440 59.1
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 2.0e-128 463.0 407 61.4
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 2.0e-128 463.0 409 60.4
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 2.0e-128 463.0 440 58.4
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 2.7e-128 462.6 390 63.6
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.7e-128 462.6 409 60.1
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 2.7e-128 462.6 445 58.9
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 3.5e-128 462.2 420 59.5
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 4.6e-128 461.8 409 60.9
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 4.6e-128 461.8 446 59.0
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 7.8e-128 461.1 422 59.2
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 1.0e-127 460.7 409 60.6
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.3e-127 460.3 439 58.5
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 1.3e-127 460.3 406 61.1
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.3e-127 460.3 429 59.9
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 2.3e-127 459.5 428 58.6
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.3e-127 459.5 413 59.8
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 2.3e-127 459.5 406 61.1
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 3.0e-127 459.1 442 58.1
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 5.0e-127 458.4 430 58.4
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 5.0e-127 458.4 406 61.1
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 6.6e-127 458.0 408 60.0
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 6.6e-127 458.0 442 57.9
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 6.6e-127 458.0 409 59.9
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 6.6e-127 458.0 444 57.9
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 6.6e-127 458.0 442 58.1
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 8.6e-127 457.6 407 59.7
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 8.6e-127 457.6 407 60.2
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.1e-126 457.2 441 56.7
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.1e-126 457.2 439 58.5
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 1.1e-126 457.2 439 57.9
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.1e-126 457.2 439 57.9
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.9e-126 456.4 401 61.8
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 3.3e-126 455.7 443 56.9
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 3.3e-126 455.7 407 60.7
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 4.3e-126 455.3 407 60.0
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 5.6e-126 454.9 423 59.1
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 5.6e-126 454.9 391 62.1
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.2e-125 453.8 423 58.9
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.2e-125 453.8 409 58.9
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 1.2e-125 453.8 409 58.9
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 2.1e-125 453.0 414 59.4
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 2.8e-125 452.6 408 59.3
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 2.8e-125 452.6 409 59.7
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 3.6e-125 452.2 427 58.1
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.8e-124 449.9 414 59.2
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.8e-124 449.9 407 59.5
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 2.3e-124 449.5 425 58.4
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 4.0e-124 448.7 438 56.8
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 4.0e-124 448.7 410 60.0
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 8.9e-124 447.6 397 60.7
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 2.6e-123 446.0 416 57.5
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 2.4e-121 439.5 405 58.0
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 2.4e-121 439.5 440 57.0
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 7.1e-121 438.0 413 57.9
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.6e-120 436.8 379 62.5
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.0e-119 434.1 379 61.2
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.7e-119 433.3 395 58.0
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 5.1e-119 431.8 410 56.6
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 8.6e-119 431.0 387 59.7
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 8.6e-119 431.0 439 53.8
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 8.1e-117 424.5 374 61.2
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 3.1e-116 422.5 399 58.1
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 4.4e-115 418.7 378 59.3
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 7.6e-115 417.9 406 58.4
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 9.9e-115 417.5 396 55.8
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.2e-114 416.4 407 58.2
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 4.1e-113 412.1 350 62.3
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 4.3e-110 402.1 387 56.3
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 5.2e-108 395.2 385 54.3
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 7.6e-107 391.3 280 69.3
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 5.4e-105 385.2 390 55.6
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 4.3e-102 375.6 388 54.6
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 7.8e-96 354.8 386 49.2
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 5.8e-91 338.6 382 50.3
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 2.9e-90 336.3 281 60.1
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.1e-88 330.1 351 54.4
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.3e-87 327.4 257 68.1
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 4.3e-70 269.2 260 55.8
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 2.2e-45 187.2 129 74.4
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 6.1e-40 169.1 84 97.6
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.5e-38 164.5 228 39.9
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.0e-38 164.1 247 38.1
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 1.7e-37 161.0 84 92.9
BolC3t17202H Brassica oleracea HOM05D000003 ORTHO05D001498 2.0e-30 137.5 72 98.6
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 3.1e-28 130.2 84 73.8
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.2e-22 111.7 135 51.1
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 2.6e-22 110.5 57 84.2
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 3.2e-20 103.6 80 65.0
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 2.0e-19 100.9 71 74.6
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 3.9e-18 96.7 98 53.1
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 4.4e-14 83.2 204 31.4
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 3.7e-13 80.1 49 79.6
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 1.1e-12 78.6 67 65.7
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 1.5e-09 68.2 40 72.5
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 6.2e-08 62.8 32 84.4


User provided reference genes

Program Settings