Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1566.6 909 100.0
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1539.2 909 98.7
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1388.6 882 86.6
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1388.2 881 89.9
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1266.1 908 82.6
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 0.0e+00 1266.1 908 82.6
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 0.0e+00 1251.9 909 81.7
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1251.5 892 81.1
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 0.0e+00 1242.3 911 81.3
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 0.0e+00 1241.5 914 78.7
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 0.0e+00 1230.3 914 83.7
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 0.0e+00 1158.7 920 79.9
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 0.0e+00 1152.9 924 78.9
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 0.0e+00 1141.7 912 76.3
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 0.0e+00 1141.3 914 77.9
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 0.0e+00 1094.3 924 69.2
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 4.7e-310 1067.8 921 68.6
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 5.4e-282 974.5 916 62.7
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.7e-227 793.5 950 52.6
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.9e-218 763.5 971 50.7
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.9e-218 763.5 954 50.7
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 1.0e-216 757.7 959 50.2
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 2.3e-216 756.5 957 49.9
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 8.2e-214 748.0 937 50.2
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 1.8e-213 746.9 928 50.8
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 1.8e-213 746.9 880 52.0
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 3.1e-213 746.1 854 52.9
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 1.6e-212 743.8 934 49.9
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 8.5e-211 738.0 930 49.9
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.1e-210 737.6 934 49.7
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 1.0e-208 731.1 936 50.1
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 3.7e-206 722.6 902 48.6
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 6.3e-206 721.8 913 49.9
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.6e-204 717.2 940 47.7
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 1.3e-203 714.1 886 50.3
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 3.8e-203 712.6 943 48.7
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 6.6e-203 711.8 876 50.2
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 8.6e-203 711.4 821 51.5
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 6.1e-201 705.3 914 48.8
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.0e-200 702.6 950 48.1
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 1.2e-199 701.0 934 47.9
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.2e-199 701.0 938 47.7
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 1.7e-198 697.2 855 50.5
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.8e-198 696.4 934 47.5
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 3.7e-198 696.0 870 49.5
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 8.3e-198 694.9 839 50.5
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.2e-196 691.0 937 47.4
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.2e-196 691.0 848 49.3
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.2e-196 691.0 864 49.2
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 4.5e-196 689.1 936 48.4
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.0e-195 688.0 891 47.3
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.0e-195 688.0 855 50.1
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 5.0e-195 685.6 942 47.0
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 2.8e-193 679.9 860 49.0
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 6.1e-193 678.7 925 45.9
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 1.0e-192 677.9 937 48.6
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.0e-192 677.9 848 48.9
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 2.0e-191 673.7 854 48.7
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 4.9e-190 669.1 951 45.6
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.0e-187 661.4 850 47.9
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.7e-187 660.6 956 45.3
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 1.1e-186 657.9 926 47.0
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 3.3e-186 656.4 851 47.9
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 1.2e-185 654.4 932 46.1
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 1.6e-185 654.1 911 47.5
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 3.6e-185 652.9 920 47.0
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 1.1e-184 651.4 953 45.3
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 1.1e-184 651.4 879 46.8
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 8.9e-184 648.3 847 48.3
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.2e-183 647.9 917 45.5
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 5.8e-183 645.6 856 46.0
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 8.3e-182 641.7 914 46.2
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 1.9e-181 640.6 924 45.9
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 2.1e-180 637.1 935 44.2
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 6.0e-180 635.6 927 45.1
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.0e-179 634.8 883 47.2
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 1.3e-179 634.4 949 44.9
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 2.3e-179 633.6 911 46.2
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.5e-178 630.9 885 45.8
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 5.6e-178 629.0 883 45.5
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 7.3e-178 628.6 868 47.0
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 9.5e-178 628.2 927 45.1
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 2.8e-177 626.7 886 45.3
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.2e-175 621.3 979 42.4
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 5.8e-175 619.0 896 46.4
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 5.8e-175 619.0 848 47.1
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 9.9e-175 618.2 879 46.8
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 5.4e-173 612.5 947 44.9
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 7.1e-173 612.1 953 43.0
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.2e-172 611.3 852 45.5
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.2e-172 611.3 929 43.1
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 3.3e-170 603.2 895 44.2
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.2e-167 594.7 788 47.5
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 2.6e-167 593.6 916 43.2
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 9.9e-167 591.7 973 41.5
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 9.2e-165 585.1 768 46.9
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.2e-164 584.7 947 43.7
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 3.5e-164 583.2 940 43.6
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 4.6e-164 582.8 787 46.9
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 2.5e-162 577.0 950 40.9
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 8.1e-161 572.0 969 42.7
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 2.2e-158 563.9 807 43.1
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 4.5e-151 539.7 973 37.5
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 5.8e-151 539.3 576 51.6
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 5.3e-144 516.2 628 48.4
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 5.3e-144 516.2 973 38.4
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 3.8e-134 483.4 918 38.3
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 3.5e-132 476.9 482 53.1
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 1.0e-126 458.8 890 39.1
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.2e-126 457.6 918 37.3
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.6e-124 450.3 478 51.3
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 3.3e-122 443.7 939 35.6
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 4.8e-121 439.9 815 37.3
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 9.4e-117 425.6 476 50.0
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.4e-99 368.6 271 71.2
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.8e-99 368.2 263 74.9
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 8.8e-91 339.3 552 41.8
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 3.1e-88 330.9 578 37.2
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.9e-72 278.5 480 39.0
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 8.9e-59 233.0 470 41.9
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 3.7e-57 227.6 343 46.9
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 7.1e-56 223.4 391 36.6
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.3e-54 219.2 172 63.4
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 1.5e-53 215.7 372 36.8
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.1e-51 209.5 349 43.8
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 4.0e-51 207.6 561 29.1
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.2e-50 206.1 414 42.8
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 2.0e-50 205.3 294 43.5
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 1.9e-48 198.7 168 58.3
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 6.0e-47 193.7 581 26.2
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 2.0e-42 178.7 494 31.4
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 3.4e-42 177.9 407 40.8
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.8e-36 157.5 420 38.1
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.0e-30 139.8 88 81.8
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 7.4e-29 133.7 140 52.9
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.0e-22 113.2 82 67.1
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 5.5e-16 90.9 84 47.6
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 9.3e-16 90.1 64 67.2
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 7.9e-15 87.0 101 56.4
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.0e-14 86.7 129 42.6
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 5.1e-14 84.3 101 55.4
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 4.1e-11 74.7 158 34.8
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.2e-07 63.2 89 46.1
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 3.6e-07 61.6 40 62.5
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.9e-07 60.5 90 50.0
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 1.4e-06 59.7 49 46.9


User provided reference genes

Program Settings