Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 7.7e-95 350.5 183 100.0
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 2.3e-91 339.0 179 99.4
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.8e-67 259.6 144 97.2
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.0e-66 256.1 151 93.4
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.7e-63 245.7 137 96.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 2.0e-58 229.6 149 85.9
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 3.3e-53 212.2 141 83.0
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 4.3e-53 211.8 139 82.0
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 5.6e-53 211.5 138 84.1
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 5.6e-53 211.5 138 84.1
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.0e-51 205.3 139 79.9
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.6e-50 202.6 139 78.4
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.4e-50 202.2 137 78.1
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 8.4e-49 197.6 137 76.6
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 8.4e-49 197.6 139 76.3
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 4.6e-47 191.8 145 74.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.0e-46 190.7 144 75.0
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.0e-46 189.1 140 75.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 6.6e-46 188.0 148 76.4
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.1e-45 187.2 138 72.5
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.9e-45 186.4 178 62.4
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.9e-45 186.4 178 62.4
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 2.5e-45 186.0 141 73.8
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 2.5e-45 186.0 141 73.8
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 2.5e-45 186.0 141 73.8
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 5.6e-45 184.9 185 62.7
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 7.3e-45 184.5 186 61.8
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 5.8e-42 174.9 142 71.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.6e-39 166.8 135 68.1
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 6.0e-39 164.9 135 69.6
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.8e-36 156.0 124 71.0
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.8e-30 136.7 163 52.1
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 6.7e-30 134.8 129 58.9
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.5e-29 133.7 130 57.7
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 4.3e-29 132.1 138 55.8
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 7.4e-29 131.3 139 54.7
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 9.6e-29 131.0 127 59.8
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.1e-28 129.8 139 53.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.8e-28 129.4 138 55.1
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 2.8e-28 129.4 134 55.2
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.8e-28 129.4 152 51.3
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.8e-28 129.4 129 56.6
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 3.7e-28 129.0 138 56.5
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.7e-28 129.0 116 60.3
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 4.8e-28 128.6 122 55.7
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.1e-27 127.5 149 52.3
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.4e-27 127.1 136 52.2
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.4e-27 127.1 138 51.4
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.8e-27 126.7 138 53.6
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.4e-27 126.3 138 55.1
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.4e-27 126.3 138 55.8
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.4e-27 126.3 129 55.8
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 3.1e-27 125.9 140 53.6
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 6.9e-27 124.8 140 52.9
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 6.9e-27 124.8 137 54.7
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 9.0e-27 124.4 138 54.3
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.2e-26 124.0 156 50.0
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.2e-26 124.0 142 55.6
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.5e-26 123.6 145 54.5
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.5e-26 123.6 134 53.0
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.5e-26 123.6 140 52.9
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.6e-26 122.9 142 53.5
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.6e-26 122.9 147 50.3
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 3.4e-26 122.5 145 54.5
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.4e-26 122.5 136 50.7
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.4e-26 122.5 134 51.5
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 5.8e-26 121.7 120 54.2
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 5.8e-26 121.7 157 47.8
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.6e-26 121.3 159 47.8
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 7.6e-26 121.3 139 53.2
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 9.9e-26 120.9 163 47.9
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 2.2e-25 119.8 133 51.9
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 6.4e-25 118.2 140 50.0
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 6.4e-25 118.2 142 51.4
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.1e-24 117.5 141 48.9
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.4e-24 117.1 138 51.4
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 1.4e-24 117.1 153 43.8
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.9e-24 116.7 118 58.5
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 2.4e-24 116.3 144 50.0
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.4e-24 116.3 141 49.6
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.2e-24 115.9 120 53.3
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 4.2e-24 115.5 132 52.3
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.5e-24 115.2 132 50.8
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 7.1e-24 114.8 149 47.0
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 9.3e-24 114.4 143 49.7
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.2e-23 114.0 146 49.3
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.6e-23 113.6 142 48.6
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 2.1e-23 113.2 142 47.2
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 2.7e-23 112.8 140 50.0
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 3.5e-23 112.5 144 50.7
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 3.5e-23 112.5 121 52.1
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 7.9e-23 111.3 90 63.3
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 7.9e-23 111.3 137 51.1
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.0e-22 110.9 141 50.4
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.3e-22 110.5 139 47.5
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.8e-22 110.2 139 51.8
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 3.0e-22 109.4 91 62.6
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.9e-22 109.0 138 51.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 5.1e-22 108.6 133 50.4
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 6.7e-22 108.2 140 45.7
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.7e-22 107.8 137 50.4
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 8.7e-22 107.8 142 46.5
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.1e-21 107.5 92 64.1
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.1e-21 107.5 153 45.1
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-21 106.7 91 60.4
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 2.5e-21 106.3 158 45.6
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 9.6e-21 104.4 91 60.4
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 9.6e-21 104.4 137 42.3
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.3e-20 104.0 96 55.2
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.6e-20 103.6 120 47.5
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.8e-20 102.8 135 45.9
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.1e-19 100.9 117 52.1
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.1e-19 100.9 147 48.3
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.1e-19 100.9 90 56.7
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 2.4e-19 99.8 98 57.1
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.1e-19 99.4 65 81.5
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 3.1e-19 99.4 150 45.3
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 4.0e-19 99.0 142 46.5
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 6.9e-19 98.2 139 46.0
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 6.9e-19 98.2 137 45.3
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 9.0e-19 97.8 100 49.0
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 9.0e-19 97.8 137 43.8
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 7.6e-18 94.7 142 43.7
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 2.2e-17 93.2 157 43.3
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 3.8e-17 92.4 142 43.0
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 8.4e-17 91.3 135 42.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.9e-16 90.1 82 56.1
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.5e-16 89.7 135 42.2
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.2e-16 89.4 142 40.8
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 4.2e-16 89.0 142 40.8
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 4.2e-16 89.0 133 42.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 7.1e-16 88.2 85 55.3
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.1e-15 86.7 137 42.3
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.7e-15 86.3 131 42.0
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 3.5e-15 85.9 112 45.5
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 3.5e-15 85.9 145 43.4
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.6e-15 85.5 94 52.1
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 6.0e-15 85.1 139 43.2
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.0e-14 84.3 121 41.3
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.3e-14 84.0 126 42.9
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 2.3e-14 83.2 109 44.0
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.9e-14 82.4 88 53.4
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 6.3e-12 75.1 90 46.7
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 5.3e-11 72.0 94 42.6
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.7e-09 67.0 90 42.2
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 1.4e-08 63.9 97 42.3
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.9e-08 63.5 88 42.0
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 1.6e-07 60.5 101 43.6
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.6e-07 60.5 77 45.5
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.6e-07 59.3 137 36.5
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.6e-07 59.3 54 59.3
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.4e-06 57.4 45 66.7
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.4e-06 57.4 53 62.3
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.3e-06 56.6 85 40.0


User provided reference genes

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