Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p60370 Brassica napus HOM05D004447 ORTHO05D018696 6.6e-69 263.8 128 100.0
BolC2t12092H Brassica oleracea HOM05D004447 ORTHO05D018696 6.6e-69 263.8 128 100.0
BcaC09g51823 Brassica carinata HOM05D004447 ORTHO05D018696 4.8e-67 257.7 128 96.9
BolC9t59746H Brassica oleracea HOM05D004447 ORTHO05D018696 1.8e-66 255.8 128 96.1
C01p08700 Brassica napus HOM05D004447 ORTHO05D018696 4.6e-62 241.1 128 93.0
A09p26680 Brassica napus HOM05D004447 ORTHO05D005973 1.1e-28 130.2 136 52.9
BcaC04g21255 Brassica carinata HOM05D004447 ORTHO05D005973 1.7e-27 126.3 136 51.5
C09p33790 Brassica napus HOM05D004447 ORTHO05D005973 1.7e-27 126.3 136 51.5
BolC9t56215H Brassica oleracea HOM05D004447 ORTHO05D005973 1.7e-27 126.3 136 51.5
Sp6g04850 Schrenkiella parvula HOM05D004447 ORTHO05D005973 1.7e-27 126.3 132 50.8
BraA09t38238Z Brassica rapa HOM05D004447 ORTHO05D005973 3.5e-25 118.6 137 47.4
Thhalv10029404m.g Eutrema salsugineum HOM05D004447 ORTHO05D005973 3.5e-25 118.6 118 50.8
BcaB01g01767 Brassica carinata HOM05D004447 ORTHO05D005973 2.7e-22 109.0 135 48.1
CARHR253540 Cardamine hirsuta HOM05D004447 ORTHO05D005973 1.8e-21 106.3 152 44.1
Carub.0006s3195 Capsella rubella HOM05D004447 ORTHO05D005973 6.7e-21 104.4 121 46.3
AT4G12620 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 1.3e-19 100.1 129 45.0
Aa31LG9G10020 Aethionema arabicum HOM05D004447 ORTHO05D005973 2.8e-19 99.0 114 43.9
AL6G47620 Arabidopsis lyrata HOM05D004447 ORTHO05D005973 4.8e-19 98.2 123 44.7
Nitab4.5_0005731g0030 Nicotiana tabacum HOM05D004447 ORTHO05D005973 4.8e-19 98.2 134 38.1
MD03G1176600 Malus domestica HOM05D004447 ORTHO05D005973 8.2e-19 97.4 134 41.8
COL.COLO4_24890 Corchorus olitorius HOM05D004447 ORTHO05D005973 1.4e-18 96.7 132 39.4
AT4G14700 Arabidopsis thaliana HOM05D004447 ORTHO05D005973 1.8e-18 96.3 121 44.6
Peaxi162Scf00862g00001 Petunia axillaris HOM05D004447 ORTHO05D005973 3.1e-18 95.5 132 39.4
Gorai.004G019600 Gossypium raimondii HOM05D004447 ORTHO05D005973 1.2e-17 93.6 107 43.0
Nitab4.5_0000023g0270 Nicotiana tabacum HOM05D004447 ORTHO05D005973 1.6e-17 93.2 103 40.8
EL10Ac4g10265 Beta vulgaris HOM05D004447 ORTHO05D005973 2.0e-17 92.8 101 42.6
EL10Ac4g10281 Beta vulgaris HOM05D004447 ORTHO05D005973 2.0e-17 92.8 101 42.6
CAN.G289.50 Capsicum annuum HOM05D004447 ORTHO05D005973 2.0e-17 92.8 125 37.6
Gohir.A08G013660 Gossypium hirsutum HOM05D004447 ORTHO05D005973 2.6e-17 92.4 107 43.0
Psat7g024280 Pisum sativum HOM05D004447 ORTHO05D005973 3.5e-17 92.0 99 47.5
Hund07518 Selenicereus undatus HOM05D004447 ORTHO05D005973 3.5e-17 92.0 101 42.6
PGSC0003DMG401012812 Solanum tuberosum HOM05D004447 ORTHO05D005973 4.5e-17 91.7 133 36.8
Thecc.09G232100 Theobroma cacao HOM05D004447 ORTHO05D005973 5.9e-17 91.3 140 35.0
Solyc03g006420.4 Solanum lycopersicum HOM05D004447 ORTHO05D005973 7.7e-17 90.9 133 36.1
Sopen03g002430 Solanum pennellii HOM05D004447 ORTHO05D005973 7.7e-17 90.9 133 36.1
TPR.G3376 Trifolium pratense HOM05D004447 ORTHO05D005973 1.0e-16 90.5 101 46.5
Lsat_1_v5_gn_2_97601 Lactuca sativa HOM05D004447 ORTHO05D005973 1.3e-16 90.1 105 41.9
Duzib170G0888 Durio zibethinus HOM05D004447 ORTHO05D005973 1.7e-16 89.7 132 33.3
Medtr8g099640 Medicago truncatula HOM05D004447 ORTHO05D005973 1.7e-16 89.7 99 46.5
AUR62019289 Chenopodium quinoa HOM05D004447 ORTHO05D005973 3.8e-16 88.6 119 39.5
Gohir.D08G024200 Gossypium hirsutum HOM05D004447 ORTHO05D005973 5.0e-16 88.2 152 36.2
THA.LOC104799099 Tarenaya hassleriana HOM05D004447 ORTHO05D005973 6.5e-16 87.8 119 39.5
Prupe.4G246200 Prunus persica HOM05D004447 ORTHO05D005973 8.5e-16 87.4 135 39.3
Sabra09G0039600 Salix brachista HOM05D004447 ORTHO05D005973 1.1e-15 87.0 133 35.3
AUR62000111 Chenopodium quinoa HOM05D004447 ORTHO05D005973 1.5e-15 86.7 133 38.3
Cpa.g.sc84.65 Carica papaya HOM05D004447 ORTHO05D005973 1.9e-15 86.3 103 38.8
GSVIVG01025279001 Vitis vinifera HOM05D004447 ORTHO05D005973 1.9e-15 86.3 104 40.4
Haze_23126 Corylus avellana HOM05D004447 ORTHO05D005973 2.5e-15 85.9 137 35.0
MBI01_g18890_MAGBIO Magnolia biondii HOM05D004447 ORTHO05D005973 2.5e-15 85.9 99 43.4
Glyma.13G340100 Glycine max HOM05D004447 ORTHO05D005973 4.2e-15 85.1 104 44.2
Phvul.L009243 Phaseolus vulgaris HOM05D004447 ORTHO05D005973 5.5e-15 84.7 137 40.1
Cc02_g33870 Coffea canephora HOM05D004447 ORTHO05D005973 7.2e-15 84.3 134 37.3
Potri.009G054300 Populus trichocarpa HOM05D004447 ORTHO05D005973 7.2e-15 84.3 153 32.0
Manes.14G002000 Manihot esculenta HOM05D004447 ORTHO05D005973 9.4e-15 84.0 140 35.0
Oeu043298.1 Olea europaea HOM05D004447 ORTHO05D005973 9.4e-15 84.0 141 35.5
CSS0002798 Camellia sinensis var. sinensis HOM05D004447 ORTHO05D005973 1.2e-14 83.6 124 37.1
CSS0013975 Camellia sinensis var. sinensis HOM05D004447 ORTHO05D005973 1.2e-14 83.6 124 37.1
HPP92_009576 Vanilla planifolia HOM05D004447 ORTHO05D005973 1.2e-14 83.6 141 36.2
VMungo1080G0814 Vigna mungo HOM05D004447 ORTHO05D005973 1.2e-14 83.6 128 40.6
Cfa009762 Carpinus fangiana HOM05D004447 ORTHO05D005973 1.6e-14 83.2 136 34.6
CiPaw.13G161800 Carya illinoinensis HOM05D004447 ORTHO05D005973 1.6e-14 83.2 136 36.0
CDE05G2287 Ceratophyllum demersum HOM05D004447 ORTHO05D005973 1.6e-14 83.2 126 38.1
Glyma.15G034300 Glycine max HOM05D004447 ORTHO05D005973 1.6e-14 83.2 104 43.3
Ciclev10014192m.g Citrus clementina HOM05D004447 ORTHO05D005973 2.1e-14 82.8 97 38.1
Psat0s3676g0040 Pisum sativum HOM05D004447 ORTHO05D018696 2.1e-14 82.8 138 37.0
vmacro17434 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 2.1e-14 82.8 133 33.8
Atru.chr3.2739 Acer truncatum HOM05D004447 ORTHO05D005973 2.7e-14 82.4 137 37.2
Aqoxy5G02409 Aquilegia oxysepala HOM05D004447 ORTHO05D005973 2.7e-14 82.4 97 39.2
Migut.D00596 Erythranthe guttata HOM05D004447 ORTHO05D005973 2.7e-14 82.4 153 32.0
Eucgr.J00777 Eucalyptus grandis HOM05D004447 ORTHO05D005973 3.6e-14 82.0 154 35.7
Nn8g41218 Nelumbo nucifera HOM05D004447 ORTHO05D005973 3.6e-14 82.0 132 35.6
QL01p004967 Quercus lobata HOM05D004447 ORTHO05D005973 4.7e-14 81.6 136 39.7
Rhsim01G0191400 Rhododendron simsii HOM05D004447 ORTHO05D005973 4.7e-14 81.6 134 32.8
FAN06G1152 Fragaria x ananassa HOM05D004447 ORTHO05D005973 6.1e-14 81.3 104 44.2
Lj2C632T3 Lonicera japonica HOM05D004447 ORTHO05D005973 6.1e-14 81.3 153 35.9
HanXRQChr07g0197501 Helianthus annuus HOM05D004447 ORTHO05D005973 8.0e-14 80.9 137 35.8
FvH4_7g17041 Fragaria vesca HOM05D004447 ORTHO05D005973 1.0e-13 80.5 104 43.3
arahy.Tifrunner.gnm1.ann1.1VP9U3 Arachis hypogaea HOM05D004447 ORTHO05D005973 1.4e-13 80.1 138 34.1
arahy.Tifrunner.gnm1.ann1.M4FG4U Arachis hypogaea HOM05D004447 ORTHO05D005973 1.4e-13 80.1 138 34.1
Ca_17467_v3 Cicer arietinum L. HOM05D004447 ORTHO05D005973 1.4e-13 80.1 99 43.4
TAR636G2291 Trochodendron aralioides HOM05D004447 ORTHO05D005973 1.4e-13 80.1 135 36.3
Actinidia06336 Actinidia chinensis HOM05D004447 ORTHO05D005973 1.8e-13 79.7 104 40.4
DCAR_031545 Daucus carota HOM05D004447 ORTHO05D005973 1.8e-13 79.7 112 34.8
vmacro12587 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 1.8e-13 79.7 134 34.3
Dinv22185 Davidia involucrata HOM05D004447 ORTHO05D005973 2.3e-13 79.3 134 34.3
FAN01G0266 Fragaria x ananassa HOM05D004447 ORTHO05D005973 2.3e-13 79.3 101 41.6
FAN03G1122 Fragaria x ananassa HOM05D004447 ORTHO05D005973 3.0e-13 79.0 99 42.4
PGR119G1865 Punica granatum HOM05D004447 ORTHO05D005973 3.0e-13 79.0 133 36.1
RcHm_v2.0_Chr3g0490671 Rosa chinensis HOM05D004447 ORTHO05D005973 3.0e-13 79.0 113 39.8
Sc16g0011520 Simmondsia chinensis HOM05D004447 ORTHO05D005973 3.0e-13 79.0 152 34.9
ATR0605G286 Amborella trichopoda HOM05D004447 ORTHO05D005973 4.0e-13 78.6 136 36.8
Lj3g0019316 Lotus japonicus HOM05D004447 ORTHO05D005973 4.0e-13 78.6 136 37.5
CANSAT54G1530 Cannabis sativa HOM05D004447 ORTHO05D005973 5.2e-13 78.2 154 35.1
ECA238G3100 Erigeron canadensis HOM05D004447 ORTHO05D005973 5.2e-13 78.2 97 38.1
Hma1.2p1_0571F.1_g180890 Hydrangea macrophylla HOM05D004447 ORTHO05D005973 6.8e-13 77.8 105 37.1
Hma1.2p1_0571F.1_g180900 Hydrangea macrophylla HOM05D004447 ORTHO05D005973 6.8e-13 77.8 105 37.1
TWI32G0348 Tripterygium wilfordii HOM05D004447 ORTHO05D005973 8.8e-13 77.4 132 32.6
Lalb_Chr24g0397081 Lupinus albus HOM05D004447 ORTHO05D005973 1.5e-12 76.6 113 40.7
Zm00001eb374440 Zea mays HOM05D004447 ORTHO05D005973 2.0e-12 76.3 99 35.4
SGA_v2.0_scaffold247G44874 Striga asiatica HOM05D004447 ORTHO05D005973 5.7e-12 74.7 138 31.9
unitig_0.g298 Utricularia gibba HOM05D004447 ORTHO05D005973 7.5e-12 74.3 154 35.1
MSTRG.21381 Avicennia marina HOM05D004447 ORTHO05D005973 1.7e-11 73.2 132 31.8
PSO302G0234 Papaver somniferum HOM05D004447 ORTHO05D005973 1.1e-10 70.5 134 31.3
PSO170G1822 Papaver somniferum HOM05D004447 ORTHO05D005973 1.4e-10 70.1 134 31.3
SMO145G0037 Selaginella moellendorffii HOM05D004447 ORTHO05D005973 1.8e-10 69.7 137 35.0
PSO455G0096 Papaver somniferum HOM05D004447 ORTHO05D005973 2.4e-10 69.3 146 30.8
Zm00001eb278360 Zea mays HOM05D004447 ORTHO05D005973 3.1e-10 68.9 128 31.2
SHI27486 Sapria himalayana HOM05D004447 ORTHO05D005973 3.5e-09 65.5 135 31.9
ClCG08G000100 Citrullus lanatus HOM05D004447 ORTHO05D005973 4.5e-09 65.1 111 34.2
Mapoly0041s0101 Marchantia polymorpha HOM05D004447 ORTHO05D005973 4.5e-09 65.1 154 30.5
GSVIVG01025457001 Vitis vinifera HOM05D004447 ORTHO05D005973 4.5e-09 65.1 88 38.6
CsaV3_3G030760 Cucumis sativus L. HOM05D004447 ORTHO05D005973 7.7e-09 64.3 145 33.1
CBR_g41485 Chara braunii HOM05D004447 ORTHO05D005973 1.7e-08 63.2 129 30.2
MELO3C007066.2 Cucumis melo HOM05D004447 ORTHO05D005973 2.2e-08 62.8 111 34.2
Ah.01g003390 Amaranthus hybridus HOM05D004447 ORTHO05D005973 1.1e-07 60.5 39 66.7
Sed0019583 Sechium edule HOM05D004447 ORTHO05D005973 1.1e-07 60.5 143 32.2
Pp3c9_1080 Physcomitrium patens HOM05D004447 ORTHO05D005973 2.1e-06 56.2 115 30.4
Nn2g15473 Nelumbo nucifera HOM05D004447 ORTHO05D029546 6.1e-06 54.7 67 41.8


User provided reference genes

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