Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g16458 Brassica carinata HOM05D000894 ORTHO05D002325 8.1e-29 129.8 69 100.0
C02p42750 Brassica napus HOM05D000894 ORTHO05D002325 8.1e-29 129.8 69 100.0
BolC2t10311H Brassica oleracea HOM05D000894 ORTHO05D002325 5.8e-27 123.6 69 95.7
AT5G42220 Arabidopsis thaliana HOM05D000894 ORTHO05D002325 2.3e-23 111.7 68 86.8
CARHR184490 Cardamine hirsuta HOM05D000894 ORTHO05D002325 2.3e-23 111.7 68 86.8
Thhalv10003631m.g Eutrema salsugineum HOM05D000894 ORTHO05D002325 3.0e-23 111.3 68 86.8
Carub.0008s0704 Capsella rubella HOM05D000894 ORTHO05D002325 5.1e-23 110.5 68 85.3
A02p27020 Brassica napus HOM05D000894 ORTHO05D002325 1.9e-22 108.6 68 85.3
BraA02t07717Z Brassica rapa HOM05D000894 ORTHO05D002325 1.9e-22 108.6 68 85.3
BcaC04g22008 Brassica carinata HOM05D000894 ORTHO05D002325 9.6e-22 106.3 65 86.2
A09p19540 Brassica napus HOM05D000894 ORTHO05D002325 9.6e-22 106.3 65 86.2
C09p24910 Brassica napus HOM05D000894 ORTHO05D002325 9.6e-22 106.3 65 86.2
BolC9t55382H Brassica oleracea HOM05D000894 ORTHO05D002325 9.6e-22 106.3 65 86.2
BraA09t37568Z Brassica rapa HOM05D000894 ORTHO05D002325 9.6e-22 106.3 65 86.2
AL8G19490 Arabidopsis lyrata HOM05D000894 ORTHO05D002325 2.8e-21 104.8 68 80.9
Aa31LG9G12370 Aethionema arabicum HOM05D000894 ORTHO05D002325 3.6e-21 104.4 68 79.4
BcaB07g31087 Brassica carinata HOM05D000894 ORTHO05D002325 1.1e-20 102.8 68 79.4
C01p11250 Brassica napus HOM05D000894 ORTHO05D002325 1.4e-20 102.4 65 81.5
BolC1t01090H Brassica oleracea HOM05D000894 ORTHO05D002325 3.1e-20 101.3 65 80.0
BcaNung05258 Brassica carinata HOM05D000894 ORTHO05D002325 8.9e-20 99.8 64 81.2
Sp7g08390 Schrenkiella parvula HOM05D000894 ORTHO05D002325 2.0e-19 98.6 67 80.6
Potri.002G013500 Populus trichocarpa HOM05D000894 ORTHO05D002325 6.6e-15 83.6 64 70.3
Cpa.g.sc26.232 Carica papaya HOM05D000894 ORTHO05D002325 8.7e-15 83.2 69 66.7
THA.LOC104809699 Tarenaya hassleriana HOM05D000894 ORTHO05D002325 8.7e-15 83.2 62 69.4
Migut.N03195 Erythranthe guttata HOM05D000894 ORTHO05D002325 3.3e-14 81.3 68 66.2
Potri.005G247900 Populus trichocarpa HOM05D000894 ORTHO05D002325 3.3e-14 81.3 64 68.8
Psat6g000200 Pisum sativum HOM05D000894 ORTHO05D002325 4.3e-14 80.9 68 64.7
COL.COLO4_21614 Corchorus olitorius HOM05D000894 ORTHO05D002325 5.6e-14 80.5 70 65.7
TWI56G0050 Tripterygium wilfordii HOM05D000894 ORTHO05D002325 5.6e-14 80.5 64 67.2
MELO3C017008.2 Cucumis melo HOM05D000894 ORTHO05D002325 9.6e-14 79.7 68 63.2
CsaV3_4G037100 Cucumis sativus L. HOM05D000894 ORTHO05D002325 9.6e-14 79.7 68 63.2
MD08G1004700 Malus domestica HOM05D000894 ORTHO05D002325 9.6e-14 79.7 68 63.2
SGA_v2.0_scaffold19G08600 Striga asiatica HOM05D000894 ORTHO05D002325 9.6e-14 79.7 68 61.8
Atru.chr13.174 Acer truncatum HOM05D000894 ORTHO05D002325 1.3e-13 79.3 70 65.7
CANSAT25G1636 Cannabis sativa HOM05D000894 ORTHO05D002325 1.3e-13 79.3 69 63.8
Lalb_Chr03g0033601 Lupinus albus HOM05D000894 ORTHO05D002325 1.3e-13 79.3 68 63.2
MD15G1004200 Malus domestica HOM05D000894 ORTHO05D002325 1.3e-13 79.3 68 63.2
Sabra02G0010500 Salix brachista HOM05D000894 ORTHO05D002325 1.3e-13 79.3 64 65.6
Thecc.08G055200 Theobroma cacao HOM05D000894 ORTHO05D002325 1.3e-13 79.3 70 65.7
Duzib093G2095 Durio zibethinus HOM05D000894 ORTHO05D002325 1.6e-13 79.0 70 65.7
arahy.Tifrunner.gnm1.ann1.LYL18I Arachis hypogaea HOM05D000894 ORTHO05D002325 2.1e-13 78.6 68 63.2
arahy.Tifrunner.gnm1.ann1.U1RN9D Arachis hypogaea HOM05D000894 ORTHO05D002325 2.1e-13 78.6 68 63.2
arahy.Tifrunner.gnm1.ann1.W1R3NJ Arachis hypogaea HOM05D000894 ORTHO05D002325 2.1e-13 78.6 68 63.2
Gorai.009G189700 Gossypium raimondii HOM05D000894 ORTHO05D002325 2.1e-13 78.6 70 64.3
Gohir.D05G184200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 2.8e-13 78.2 70 64.3
Phvul.001G001400 Phaseolus vulgaris HOM05D000894 ORTHO05D002325 2.8e-13 78.2 68 60.3
ClCG05G015220 Citrullus lanatus HOM05D000894 ORTHO05D002325 3.6e-13 77.8 68 61.8
Gohir.D05G256500 Gossypium hirsutum HOM05D000894 ORTHO05D002325 4.8e-13 77.4 70 64.3
Gorai.009G268000 Gossypium raimondii HOM05D000894 ORTHO05D002325 4.8e-13 77.4 70 64.3
Hma1.2p1_1260F.1_g271030 Hydrangea macrophylla HOM05D000894 ORTHO05D002325 4.8e-13 77.4 68 61.8
Gohir.A05G254900 Gossypium hirsutum HOM05D000894 ORTHO05D002325 6.2e-13 77.0 70 62.9
AUR62013832 Chenopodium quinoa HOM05D000894 ORTHO05D002325 1.1e-12 76.3 68 58.8
AUR62036772 Chenopodium quinoa HOM05D000894 ORTHO05D002325 1.1e-12 76.3 68 58.8
Dinv39574 Davidia involucrata HOM05D000894 ORTHO05D002325 1.1e-12 76.3 68 61.8
QL02p013593 Quercus lobata HOM05D000894 ORTHO05D002325 1.1e-12 76.3 68 58.8
DCAR_013900 Daucus carota HOM05D000894 ORTHO05D002325 1.4e-12 75.9 68 63.2
Duzib041G0349 Durio zibethinus HOM05D000894 ORTHO05D002325 1.4e-12 75.9 70 61.4
Glyma.17G261600 Glycine max HOM05D000894 ORTHO05D002325 1.4e-12 75.9 68 60.3
Gohir.A05G181200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 1.4e-12 75.9 64 64.1
Lalb_Chr19g0131691 Lupinus albus HOM05D000894 ORTHO05D002325 1.4e-12 75.9 68 58.8
PGR083G1464 Punica granatum HOM05D000894 ORTHO05D002325 1.4e-12 75.9 70 62.9
Lalb_Chr01g0008391 Lupinus albus HOM05D000894 ORTHO05D002325 1.8e-12 75.5 68 60.3
Solyc04g082160.4 Solanum lycopersicum HOM05D000894 ORTHO05D002325 1.8e-12 75.5 64 60.9
Sopen04g035790 Solanum pennellii HOM05D000894 ORTHO05D002325 1.8e-12 75.5 64 60.9
Ah.11g040680 Amaranthus hybridus HOM05D000894 ORTHO05D002325 2.4e-12 75.1 71 57.7
EL10Ac1g02026 Beta vulgaris HOM05D000894 ORTHO05D002325 2.4e-12 75.1 69 59.4
TPR.G26410 Trifolium pratense HOM05D000894 ORTHO05D002325 2.4e-12 75.1 68 60.3
CSS0044890 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 3.1e-12 74.7 68 60.3
Cc10_g00880 Coffea canephora HOM05D000894 ORTHO05D002325 3.1e-12 74.7 70 58.6
Oeu046333.2 Olea europaea HOM05D000894 ORTHO05D002325 3.1e-12 74.7 68 57.4
Peaxi162Scf00174g00159 Petunia axillaris HOM05D000894 ORTHO05D002325 3.1e-12 74.7 64 60.9
Actinidia15476 Actinidia chinensis HOM05D000894 ORTHO05D002325 4.0e-12 74.3 68 57.4
Aqoxy3G00355 Aquilegia oxysepala HOM05D000894 ORTHO05D002325 4.0e-12 74.3 60 61.7
MSTRG.1129 Avicennia marina HOM05D000894 ORTHO05D002325 4.0e-12 74.3 68 57.4
CSS0030543 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 4.0e-12 74.3 68 60.3
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 4.0e-12 74.3 64 64.1
Glyma.14G223100 Glycine max HOM05D000894 ORTHO05D002325 4.0e-12 74.3 68 58.8
Oeu025003.4 Olea europaea HOM05D000894 ORTHO05D002325 4.0e-12 74.3 68 57.4
Sabra05G0191600 Salix brachista HOM05D000894 ORTHO05D002325 4.0e-12 74.3 64 62.5
TAR381G0735 Trochodendron aralioides HOM05D000894 ORTHO05D002325 4.0e-12 74.3 68 58.8
Medtr1g026290 Medicago truncatula HOM05D000894 ORTHO05D002325 5.3e-12 73.9 68 58.8
Rhsim06G0009500 Rhododendron simsii HOM05D000894 ORTHO05D002325 5.3e-12 73.9 68 58.8
Ciclev10000172m.g Citrus clementina HOM05D000894 ORTHO05D002325 6.9e-12 73.6 64 57.8
Nn5g30896 Nelumbo nucifera HOM05D000894 ORTHO05D002325 6.9e-12 73.6 64 62.5
Nitab4.5_0000588g0330 Nicotiana tabacum HOM05D000894 ORTHO05D002325 6.9e-12 73.6 68 55.9
Ca_13492_v3 Cicer arietinum L. HOM05D000894 ORTHO05D002325 9.0e-12 73.2 68 58.8
FvH4_2g37770 Fragaria vesca HOM05D000894 ORTHO05D002325 9.0e-12 73.2 70 60.0
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 9.0e-12 73.2 70 60.0
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 9.0e-12 73.2 70 60.0
Prupe.1G356800 Prunus persica HOM05D000894 ORTHO05D002325 9.0e-12 73.2 70 60.0
RcHm_v2.0_Chr6g0303971 Rosa chinensis HOM05D000894 ORTHO05D002325 9.0e-12 73.2 70 60.0
Lj5g0012630 Lotus japonicus HOM05D000894 ORTHO05D002325 1.2e-11 72.8 67 59.7
TAR625G0558 Trochodendron aralioides HOM05D000894 ORTHO05D002325 1.5e-11 72.4 68 55.9
Cfa014035 Carpinus fangiana HOM05D000894 ORTHO05D002325 2.6e-11 71.6 68 57.4
Haze_22740 Corylus avellana HOM05D000894 ORTHO05D002325 2.6e-11 71.6 64 59.4
Eucgr.F01713 Eucalyptus grandis HOM05D000894 ORTHO05D002325 3.4e-11 71.2 68 61.8
Sc02g0008970 Simmondsia chinensis HOM05D000894 ORTHO05D002325 3.4e-11 71.2 64 56.2
PGSC0003DMG400009894 Solanum tuberosum HOM05D000894 ORTHO05D002325 3.4e-11 71.2 64 57.8
vmacro21837 Vaccinium macrocarpon HOM05D000894 ORTHO05D002325 5.8e-11 70.5 68 55.9
CiPaw.07G141400 Carya illinoinensis HOM05D000894 ORTHO05D002325 7.6e-11 70.1 68 57.4
Lj4C803T7 Lonicera japonica HOM05D000894 ORTHO05D002325 7.6e-11 70.1 60 58.3
Sed0000145 Sechium edule HOM05D000894 ORTHO05D002325 9.9e-11 69.7 68 57.4
CSS0020420 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 1.7e-10 68.9 68 57.4
Lsat_1_v5_gn_3_7681 Lactuca sativa HOM05D000894 ORTHO05D002325 2.9e-10 68.2 65 56.9
Sed0000541 Sechium edule HOM05D000894 ORTHO05D002325 3.8e-10 67.8 68 60.3
CANSAT25G2538 Cannabis sativa HOM05D000894 ORTHO05D002325 4.9e-10 67.4 69 58.0
HanXRQChr06g0165771 Helianthus annuus HOM05D000894 ORTHO05D002325 8.4e-10 66.6 54 63.0
HanXRQChr17g0533381 Helianthus annuus HOM05D000894 ORTHO05D002325 2.4e-09 65.1 68 51.5
Manes.05G140700 Manihot esculenta HOM05D000894 ORTHO05D002325 2.4e-09 65.1 49 69.4
ECA246G4835 Erigeron canadensis HOM05D000894 ORTHO05D002325 5.4e-09 63.9 66 53.0
unitig_32.g11246 Utricularia gibba HOM05D000894 ORTHO05D002325 7.1e-09 63.5 68 50.0
HanXRQChr02g0048881 Helianthus annuus HOM05D000894 ORTHO05D002325 2.7e-08 61.6 68 45.6
GSVIVG01029432001 Vitis vinifera HOM05D000894 ORTHO05D002325 2.3e-07 58.5 68 50.0
CDE02G0614 Ceratophyllum demersum HOM05D000894 ORTHO05D002325 6.7e-07 57.0 55 54.5
SGA_v2.0_scaffold25G11192 Striga asiatica HOM05D000894 ORTHO05D002325 4.3e-06 54.3 59 45.8


User provided reference genes

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