Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 2315.8 1293 100.0
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 2315.8 1293 100.0
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 0.0e+00 2286.5 1298 98.3
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 0.0e+00 2239.9 1307 96.3
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 2233.8 1302 96.2
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1978.8 1233 88.6
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 0.0e+00 1787.3 1365 77.6
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 0.0e+00 1740.3 1350 76.4
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1734.9 1337 77.2
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 0.0e+00 1728.4 1332 75.1
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 0.0e+00 1702.2 1340 75.4
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1701.8 1362 74.1
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 0.0e+00 1700.3 1342 75.2
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 0.0e+00 1695.2 1364 73.9
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 0.0e+00 1679.8 1372 71.8
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 0.0e+00 1656.7 1341 73.5
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 0.0e+00 1516.1 1355 68.0
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 0.0e+00 1280.4 1181 63.7
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1179.1 1153 61.1
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 9.8e-269 931.0 1408 47.9
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 1.7e-268 930.2 1417 47.9
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.7e-268 930.2 1378 45.6
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 1.0e-265 921.0 1401 48.0
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 2.5e-264 916.4 1393 46.7
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 5.2e-262 908.7 1378 46.1
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 8.9e-262 907.9 1385 46.1
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 2.2e-260 903.3 1391 45.9
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.7e-257 893.6 1371 45.5
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 2.5e-256 889.8 1375 45.4
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 4.3e-256 889.0 1385 47.9
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 2.1e-255 886.7 1397 45.5
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 6.1e-255 885.2 1356 46.7
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.1e-254 882.9 1392 46.7
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 6.8e-254 881.7 1395 47.0
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 5.8e-253 878.6 1419 44.7
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 7.5e-253 878.2 1379 46.7
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.7e-252 877.1 1380 46.7
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.7e-252 875.9 1406 45.9
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 7.0e-251 871.7 1388 46.8
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.0e-250 870.2 1413 45.2
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 3.0e-249 866.3 1395 46.8
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 8.6e-249 864.8 1359 46.0
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.1e-248 864.4 1407 45.9
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 4.3e-248 862.4 1348 45.5
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 5.6e-248 862.1 1408 45.5
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.1e-247 860.1 1377 46.3
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 3.6e-247 859.4 1405 44.8
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 6.2e-247 858.6 1308 49.2
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 4.0e-246 855.9 1358 45.7
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.5e-245 854.0 1397 45.2
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 1.3e-244 850.9 1378 45.6
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.3e-244 850.9 1423 45.5
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 1.4e-243 847.4 1381 45.5
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 7.1e-243 845.1 1437 45.2
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 7.1e-243 845.1 1326 46.2
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 1.3e-241 840.9 1349 45.1
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.3e-241 840.1 1359 45.3
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 2.3e-241 840.1 1352 45.6
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 3.9e-241 839.3 1452 44.6
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 1.5e-240 837.4 1390 44.6
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 1.2e-239 834.3 1357 45.2
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 2.1e-239 833.6 1378 45.1
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 8.1e-239 831.6 1376 45.3
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 1.5e-237 827.4 1370 46.4
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 1.7e-236 823.9 1373 46.2
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 1.9e-235 820.5 1353 45.5
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 7.1e-235 818.5 1358 44.7
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 3.5e-234 816.2 1373 44.9
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 3.3e-232 809.7 1361 44.7
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 8.9e-230 801.6 1361 42.9
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.2e-229 801.2 1365 44.5
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 3.4e-229 799.7 1381 44.2
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 5.4e-227 792.3 1371 44.2
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 9.3e-227 791.6 1376 44.4
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 2.8e-223 780.0 1211 48.9
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 5.8e-221 772.3 1354 43.7
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.4e-220 768.8 1208 44.5
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 1.1e-219 768.1 1169 49.4
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 2.4e-219 766.9 1387 44.0
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.4e-219 766.9 1108 45.4
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 3.6e-215 753.1 1414 42.5
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 1.1e-214 751.5 1300 46.4
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 6.0e-210 735.7 1388 41.1
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 7.4e-208 728.8 1432 42.7
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 4.8e-207 726.1 1366 40.1
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 6.2e-207 725.7 1522 40.1
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 2.9e-204 716.8 1348 42.1
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.9e-203 714.1 1349 42.7
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 4.2e-203 713.0 1137 45.9
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.1e-200 704.9 1418 42.8
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 1.9e-200 704.1 1211 43.7
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.3e-199 701.4 1150 42.5
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.5e-194 683.3 1362 38.9
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 1.8e-193 681.0 1383 42.0
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 1.9e-192 677.6 1023 44.1
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 6.3e-191 672.5 872 47.8
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 5.5e-187 659.4 1494 39.8
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.6e-186 656.4 1341 41.5
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 4.6e-186 656.4 1519 39.6
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 2.3e-185 654.1 939 45.5
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.8e-182 644.4 1360 40.9
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 3.1e-182 643.7 769 51.5
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 3.0e-177 627.1 1379 38.2
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.8e-174 617.8 1354 40.8
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 1.2e-173 615.1 766 54.3
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 8.5e-172 609.0 1266 38.2
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.6e-170 604.7 1349 39.8
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.8e-164 583.6 1093 45.7
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 3.6e-162 577.0 1011 41.5
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 8.3e-159 565.8 1350 36.0
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 1.0e-156 558.9 1362 39.3
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.2e-151 541.2 1017 42.8
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 7.7e-149 532.7 1017 39.9
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 4.0e-145 520.4 901 41.5
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 8.3e-143 512.7 1177 35.9
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 2.7e-141 507.7 1372 35.9
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.3e-137 494.6 1093 39.9
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 1.2e-136 492.3 1011 37.6
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 4.1e-126 457.2 1201 36.6
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.2e-117 429.1 786 41.6
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 9.6e-115 419.5 1272 32.5
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 4.9e-111 407.1 1246 34.3
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 5.4e-102 377.1 536 44.6
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 1.3e-100 372.5 1215 32.3
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 8.7e-100 369.8 1371 32.1
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.3e-90 339.3 915 38.8
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 3.4e-88 331.3 1400 29.9
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 2.1e-77 295.4 1265 29.9
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.1e-73 281.2 314 51.0
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 6.9e-73 280.4 1423 28.4
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 6.1e-69 267.3 1185 29.4
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.7e-67 260.8 414 41.3
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 8.8e-60 236.9 484 37.0
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 9.7e-59 233.4 857 29.8
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.2e-56 226.5 1212 26.6
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.5e-51 209.5 1151 28.7
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 5.7e-51 207.6 1091 27.6
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.7e-50 206.1 864 27.7
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 2.4e-49 202.2 825 27.2
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.7e-48 198.7 334 40.7
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.9e-47 195.3 247 43.7
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 3.0e-44 185.3 310 39.0
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 4.0e-44 184.9 188 51.1
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 1.5e-43 183.0 439 35.5
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.4e-43 181.4 197 50.3
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.5e-43 180.6 1066 27.6
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 1.3e-42 179.9 211 50.2
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 6.3e-42 177.6 244 42.6
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 4.1e-41 174.9 136 68.4
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.9e-39 168.7 219 44.7
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.9e-38 166.0 1018 27.0
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 2.8e-37 162.2 373 33.5
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.4e-36 159.8 208 45.2
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.8e-36 159.5 167 50.9
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.3e-36 159.1 766 26.8
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 9.8e-35 153.7 373 33.8
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 5.6e-30 137.9 608 32.2
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.1e-29 136.0 724 27.2
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 1.7e-26 126.3 1033 24.3
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 7.0e-25 120.9 899 23.7
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 6.6e-23 114.4 225 57.3
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.8e-20 106.3 330 39.4
C04p42890 Brassica napus HOM05D001675 ORTHO05D021664 2.2e-18 99.4 108 56.5
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 2.4e-17 95.9 173 30.6
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 2.4e-17 95.9 129 40.3
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 1.6e-16 93.2 168 36.3
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 2.0e-16 92.8 979 23.8
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.7e-16 92.4 1181 21.9
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 1.5e-14 86.7 120 43.3
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 5.6e-14 84.7 82 53.7
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 5.6e-14 84.7 1095 21.6
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 2.1e-13 82.8 88 50.0
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 6.2e-13 81.3 131 39.7
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 8.1e-13 80.9 69 60.9
BolC4t25858H Brassica oleracea HOM05D001675 ORTHO05D001808 5.2e-12 78.2 99 53.5
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 6.8e-12 77.8 240 32.5
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.4e-09 70.1 127 43.3
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 1.2e-08 67.0 75 49.3
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 8.6e-07 60.8 380 26.8


User provided reference genes

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