Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p24690 Brassica napus HOM05D004901 ORTHO05D005592 6.9e-93 344.0 175 100.0
A05p23720 Brassica napus HOM05D004901 ORTHO05D005592 1.9e-34 149.8 95 81.1
BraA05t21240Z Brassica rapa HOM05D004901 ORTHO05D005592 1.9e-34 149.8 95 81.1
Sp1g30300 Schrenkiella parvula HOM05D004901 ORTHO05D005592 1.1e-29 134.0 90 75.6
BcaC05g27729 Brassica carinata HOM05D004901 ORTHO05D005592 1.2e-28 130.6 87 79.3
C05p37130 Brassica napus HOM05D004901 ORTHO05D005592 1.2e-28 130.6 87 79.3
BolC5t32466H Brassica oleracea HOM05D004901 ORTHO05D005592 1.2e-28 130.6 87 79.3
Thhalv10002370m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 1.9e-26 123.2 90 72.2
Aa31LG6G8790 Aethionema arabicum HOM05D004901 ORTHO05D005592 2.8e-25 119.4 89 71.9
Thhalv10001810m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 5.2e-24 115.2 92 68.5
BcaB03g13661 Brassica carinata HOM05D004901 ORTHO05D005592 1.5e-23 113.6 87 72.4
Carub.0001s3315 Capsella rubella HOM05D004901 ORTHO05D005592 4.9e-22 108.6 93 66.7
AL1G50380 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 8.3e-22 107.8 94 66.0
AT1G35530 Arabidopsis thaliana HOM05D004901 ORTHO05D005592 4.1e-21 105.5 91 68.1
THA.LOC104816395 Tarenaya hassleriana HOM05D004901 ORTHO05D005592 4.1e-21 105.5 104 58.7
AL1G60360 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 7.1e-21 104.8 95 65.3
Gohir.D13G124700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 7.8e-20 101.3 85 63.5
Thecc.08G186400 Theobroma cacao HOM05D004901 ORTHO05D005592 2.3e-19 99.8 84 63.1
Gorai.013G139300 Gossypium raimondii HOM05D004901 ORTHO05D005592 3.0e-19 99.4 85 62.4
Eucgr.F02585 Eucalyptus grandis HOM05D004901 ORTHO05D005592 6.6e-19 98.2 106 53.8
DCAR_011526 Daucus carota HOM05D004901 ORTHO05D005592 2.5e-18 96.3 85 58.8
Cfa008133 Carpinus fangiana HOM05D004901 ORTHO05D005592 5.6e-18 95.1 97 55.7
ClCG11G008690 Citrullus lanatus HOM05D004901 ORTHO05D005592 9.5e-18 94.4 88 61.4
Cpa.g.sc66.25 Carica papaya HOM05D004901 ORTHO05D005592 1.2e-17 94.0 84 59.5
Haze_13904 Corylus avellana HOM05D004901 ORTHO05D005592 1.2e-17 94.0 97 55.7
CANSAT56G0037 Cannabis sativa HOM05D004901 ORTHO05D005592 2.1e-17 93.2 87 59.8
COL.COLO4_12801 Corchorus olitorius HOM05D004901 ORTHO05D005592 2.1e-17 93.2 88 59.1
Lsat_1_v5_gn_8_141780 Lactuca sativa HOM05D004901 ORTHO05D005592 2.1e-17 93.2 89 55.1
CsaV3_2G033030 Cucumis sativus L. HOM05D004901 ORTHO05D005592 2.8e-17 92.8 86 60.5
FAN03G3444 Fragaria x ananassa HOM05D004901 ORTHO05D005592 2.8e-17 92.8 87 59.8
CiPaw.03G019200 Carya illinoinensis HOM05D004901 ORTHO05D005592 3.6e-17 92.4 88 58.0
MELO3C008073.2 Cucumis melo HOM05D004901 ORTHO05D005592 3.6e-17 92.4 92 58.7
FvH4_7g03750 Fragaria vesca HOM05D004901 ORTHO05D005592 6.2e-17 91.7 87 58.6
Prupe.1G551100 Prunus persica HOM05D004901 ORTHO05D005592 6.2e-17 91.7 89 55.1
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 8.1e-17 91.3 91 53.8
MD15G1404400 Malus domestica HOM05D004901 ORTHO05D005592 1.1e-16 90.9 89 53.9
PGR042G2824 Punica granatum HOM05D004901 ORTHO05D005592 1.4e-16 90.5 88 59.1
CSS0009856 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 1.8e-16 90.1 88 56.8
Phvul.011G000500 Phaseolus vulgaris HOM05D004901 ORTHO05D005592 2.3e-16 89.7 91 57.1
Ciclev10000033m.g Citrus clementina HOM05D004901 ORTHO05D005592 4.0e-16 89.0 87 56.3
FAN01G2229 Fragaria x ananassa HOM05D004901 ORTHO05D005592 4.0e-16 89.0 87 56.3
FAN06G0910 Fragaria x ananassa HOM05D004901 ORTHO05D005592 4.0e-16 89.0 87 57.5
RcHm_v2.0_Chr7g0228881 Rosa chinensis HOM05D004901 ORTHO05D005592 5.2e-16 88.6 89 56.2
arahy.Tifrunner.gnm1.ann1.0Z9JWZ Arachis hypogaea HOM05D004901 ORTHO05D005592 6.8e-16 88.2 88 55.7
Dinv02587 Davidia involucrata HOM05D004901 ORTHO05D005592 8.9e-16 87.8 93 50.5
Sc23g0001380 Simmondsia chinensis HOM05D004901 ORTHO05D005592 8.9e-16 87.8 90 55.6
Nn5g27609 Nelumbo nucifera HOM05D004901 ORTHO05D005592 1.2e-15 87.4 87 55.2
QL09p004928 Quercus lobata HOM05D004901 ORTHO05D005592 1.2e-15 87.4 95 52.6
arahy.Tifrunner.gnm1.ann1.CA6GZM Arachis hypogaea HOM05D004901 ORTHO05D005592 1.5e-15 87.0 88 54.5
Glyma.08G238200 Glycine max HOM05D004901 ORTHO05D005592 1.5e-15 87.0 99 54.5
Migut.C01287 Erythranthe guttata HOM05D004901 ORTHO05D005592 2.6e-15 86.3 134 41.8
Potri.013G110200 Populus trichocarpa HOM05D004901 ORTHO05D005592 2.6e-15 86.3 89 58.4
Sabra13G0094500 Salix brachista HOM05D004901 ORTHO05D005592 2.6e-15 86.3 89 57.3
Duzib177G1004 Durio zibethinus HOM05D004901 ORTHO05D005592 3.4e-15 85.9 89 56.2
TAR628G1246 Trochodendron aralioides HOM05D004901 ORTHO05D005592 3.4e-15 85.9 96 50.0
Manes.18G103400 Manihot esculenta HOM05D004901 ORTHO05D005592 4.4e-15 85.5 90 55.6
GSVIVG01034779001 Vitis vinifera HOM05D004901 ORTHO05D005592 4.4e-15 85.5 89 53.9
MBI17_g38773_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 2.2e-14 83.2 98 54.1
Hund16786 Selenicereus undatus HOM05D004901 ORTHO05D005592 2.2e-14 83.2 89 53.9
Lj3g0009157 Lotus japonicus HOM05D004901 ORTHO05D005592 2.9e-14 82.8 84 56.0
Medtr1g103260 Medicago truncatula HOM05D004901 ORTHO05D005592 3.7e-14 82.4 89 52.8
SHI09022 Sapria himalayana HOM05D004901 ORTHO05D005592 3.7e-14 82.4 86 53.5
GSVIVG01012489001 Vitis vinifera HOM05D004901 ORTHO05D005592 4.9e-14 82.0 89 52.8
Gohir.A13G120700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 8.4e-14 81.3 48 83.3
SGA_v2.0_scaffold24G10583 Striga asiatica HOM05D004901 ORTHO05D005592 1.1e-13 80.9 51 74.5
Atru.chr13.2409 Acer truncatum HOM05D004901 ORTHO05D005592 1.4e-13 80.5 105 49.5
Nitab4.5_0000167g0300 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.4e-13 80.5 124 43.5
Oeu021225.1 Olea europaea HOM05D004901 ORTHO05D005592 1.4e-13 80.5 122 43.4
SalBow7G4726 Salvia bowleyana HOM05D004901 ORTHO05D005592 3.2e-13 79.3 99 46.5
Sed0000511 Sechium edule HOM05D004901 ORTHO05D005592 3.2e-13 79.3 86 52.3
Rhsim11G0056200 Rhododendron simsii HOM05D004901 ORTHO05D005592 4.1e-13 79.0 98 49.0
EL10Ac1g00109 Beta vulgaris HOM05D004901 ORTHO05D005592 5.4e-13 78.6 98 49.0
Nitab4.5_0003010g0050 Nicotiana tabacum HOM05D004901 ORTHO05D005592 5.4e-13 78.6 89 51.7
ATR0749G100 Amborella trichopoda HOM05D004901 ORTHO05D005592 7.1e-13 78.2 97 48.5
Cc00_g06540 Coffea canephora HOM05D004901 ORTHO05D005592 7.1e-13 78.2 48 77.1
HanXRQChr17g0559191 Helianthus annuus HOM05D004901 ORTHO05D005592 7.1e-13 78.2 80 53.8
TPR.G26106 Trifolium pratense HOM05D004901 ORTHO05D005592 7.1e-13 78.2 90 52.2
Ah.04g162840 Amaranthus hybridus HOM05D004901 ORTHO05D005592 9.2e-13 77.8 87 52.9
Peaxi162Scf00391g00530 Petunia axillaris HOM05D004901 ORTHO05D005592 9.2e-13 77.8 85 50.6
Psat0s1585g0040 Pisum sativum HOM05D004901 ORTHO05D005592 9.2e-13 77.8 84 52.4
HPP92_004437 Vanilla planifolia HOM05D004901 ORTHO05D005592 1.2e-12 77.4 101 47.5
Lalb_Chr01g0000031 Lupinus albus HOM05D004901 ORTHO05D005592 1.6e-12 77.0 46 80.4
Aqoxy6G00145 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 3.5e-12 75.9 46 76.1
AUR62004624 Chenopodium quinoa HOM05D004901 ORTHO05D005592 3.5e-12 75.9 95 47.4
Sopen11g010870 Solanum pennellii HOM05D004901 ORTHO05D005592 4.6e-12 75.5 90 47.8
vmacro00754 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 4.6e-12 75.5 94 47.9
VMungo1127G0411 Vigna mungo HOM05D004901 ORTHO05D005592 6.0e-12 75.1 74 59.5
CAN.G259.2 Capsicum annuum HOM05D004901 ORTHO05D005592 1.3e-11 73.9 92 45.7
PSO170G4536 Papaver somniferum HOM05D004901 ORTHO05D005592 1.3e-11 73.9 101 44.6
PSO782G5557 Papaver somniferum HOM05D004901 ORTHO05D005592 1.7e-11 73.6 101 43.6
unitig_747.g21475 Utricularia gibba HOM05D004901 ORTHO05D005592 3.9e-11 72.4 52 65.4
Pp3c20_9530 Physcomitrium patens HOM05D004901 ORTHO05D005592 5.6e-10 68.6 46 69.6
AagrBONN_evm.TU.Sc2ySwM_228.534 Anthoceros agrestis HOM05D004901 ORTHO05D005592 9.6e-10 67.8 86 43.0
Mapoly0001s0472 Marchantia polymorpha HOM05D004901 ORTHO05D005592 1.6e-09 67.0 48 66.7
AUR62023519 Chenopodium quinoa HOM05D004901 ORTHO05D005592 6.8e-08 61.6 83 44.6
AL307U10020 Arabidopsis lyrata HOM05D005428 ORTHO05D006876 5.8e-07 58.5 111 44.1
Os11g0180600 Oryza sativa ssp. japonica HOM05D004901 ORTHO05D005592 7.6e-07 58.2 60 53.3
Zm00001eb201140 Zea mays HOM05D004901 ORTHO05D005592 2.2e-06 56.6 44 56.8


User provided reference genes

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