Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.7e-140 502.7 257 100.0
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 5.5e-131 471.1 281 88.6
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 9.7e-120 433.7 244 91.4
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 3.7e-119 431.8 222 98.6
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 4.1e-118 428.3 221 98.6
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 3.5e-117 425.2 221 97.7
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-115 420.2 221 96.4
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 1.1e-115 420.2 221 96.4
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 4.2e-115 418.3 221 95.9
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 5.5e-115 417.9 221 95.9
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 4.7e-114 414.8 221 95.0
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 4.7e-114 414.8 221 95.9
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.4e-113 413.3 230 92.6
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.4e-113 413.3 221 95.5
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 2.7e-109 399.1 222 91.4
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 2.2e-108 396.0 222 91.0
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 1.1e-107 393.7 222 90.1
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.0e-105 387.1 222 90.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.2e-96 357.1 262 74.4
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 2.3e-92 342.8 219 78.5
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 2.3e-73 279.6 219 64.4
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 4.1e-70 268.9 219 62.1
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 6.0e-69 265.0 219 61.6
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.8e-69 264.6 219 60.7
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 1.7e-68 263.5 218 63.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 8.6e-68 261.2 219 63.0
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 7.3e-67 258.1 218 63.3
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 7.3e-67 258.1 219 61.2
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 9.6e-67 257.7 219 60.7
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.2e-66 257.3 191 67.5
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.2e-66 257.3 252 56.3
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 1.6e-66 256.9 219 59.4
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.1e-66 256.5 222 61.3
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 2.8e-66 256.1 220 60.0
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 6.2e-66 255.0 216 62.0
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 2.4e-65 253.1 223 60.1
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 6.9e-65 251.5 219 62.1
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.2e-64 250.8 205 64.9
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 2.6e-64 249.6 219 59.8
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 3.4e-64 249.2 218 60.6
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 4.4e-64 248.8 220 59.1
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.4e-64 248.8 219 59.4
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.7e-63 246.9 219 58.9
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 3.8e-63 245.7 219 59.8
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 4.9e-63 245.4 221 58.8
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 8.4e-63 244.6 218 60.1
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.4e-62 243.8 219 59.8
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-62 243.8 219 58.0
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-62 243.8 219 58.0
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.4e-62 243.8 219 58.0
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.4e-62 243.8 248 54.4
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-62 243.4 219 58.0
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-62 243.4 219 58.0
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.4e-62 243.0 220 58.6
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.4e-62 241.9 219 57.5
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.4e-62 241.9 219 57.5
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.2e-61 240.7 219 57.5
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.6e-61 240.4 218 59.6
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 2.1e-61 240.0 224 60.3
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.3e-60 237.3 221 57.0
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.7e-60 236.9 218 59.6
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 2.3e-60 236.5 190 64.7
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 6.6e-60 235.0 218 56.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.9e-59 233.4 217 57.1
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 1.9e-59 233.4 213 59.2
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 2.5e-59 233.0 219 58.0
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 5.6e-59 231.9 190 64.7
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 5.6e-59 231.9 213 58.2
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 7.3e-59 231.5 213 59.2
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 1.6e-58 230.3 213 59.6
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.8e-58 229.6 206 58.3
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 2.8e-58 229.6 226 54.9
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 4.8e-58 228.8 218 55.5
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 4.8e-58 228.8 215 60.0
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 6.2e-58 228.4 220 55.5
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 8.1e-58 228.0 214 56.5
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 8.1e-58 228.0 226 54.4
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-57 227.6 214 56.5
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.8e-57 226.9 206 58.3
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.8e-57 226.9 199 60.3
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 2.4e-57 226.5 220 54.5
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 2.4e-57 226.5 224 56.2
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 3.1e-57 226.1 218 55.5
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 4.0e-57 225.7 197 61.4
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 4.0e-57 225.7 219 55.7
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 5.3e-57 225.3 193 61.1
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 6.9e-57 224.9 218 55.0
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 9.0e-57 224.6 218 56.4
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.5e-56 223.8 203 59.6
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 3.4e-56 222.6 219 53.9
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 4.5e-56 222.2 193 62.2
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 7.6e-56 221.5 208 58.7
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.3e-55 220.7 218 56.0
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.3e-55 220.7 224 55.4
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 1.3e-55 220.7 212 57.1
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 2.9e-55 219.5 218 56.0
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 6.4e-55 218.4 219 56.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.1e-54 217.6 217 55.8
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.4e-54 217.2 200 59.5
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 2.4e-54 216.5 227 55.1
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 4.2e-54 215.7 189 61.4
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 9.3e-54 214.5 224 53.6
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 1.6e-53 213.8 232 50.9
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.5e-53 212.6 200 57.5
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 3.5e-53 212.6 255 49.4
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 4.6e-53 212.2 204 55.9
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 6.0e-53 211.8 123 91.1
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 1.1e-51 207.6 192 59.9
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 1.5e-51 207.2 248 50.4
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 4.3e-51 205.7 231 50.2
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 4.3e-51 205.7 218 51.4
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.6e-51 205.3 164 65.2
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 9.6e-51 204.5 220 51.4
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 9.6e-51 204.5 235 50.6
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.1e-49 201.1 185 58.9
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.7e-47 193.7 175 60.0
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 7.1e-46 188.3 264 43.9
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 6.0e-45 185.3 196 53.6
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.3e-44 184.1 216 50.9
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 5.1e-44 182.2 341 36.7
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 1.9e-43 180.3 195 52.3
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 9.6e-43 177.9 192 54.2
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 1.6e-42 177.2 141 70.9
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 3.1e-41 172.9 250 43.6
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.2e-38 162.9 154 57.8
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 4.2e-38 162.5 137 66.4
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 3.5e-37 159.5 173 53.2
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 6.0e-37 158.7 145 59.3
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 6.0e-37 158.7 141 65.2
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.9e-37 158.3 146 57.5
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 6.7e-36 155.2 134 60.4
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 4.3e-35 152.5 147 57.1
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 2.6e-32 143.3 173 52.6
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 7.9e-29 131.7 96 72.9
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 3.9e-28 129.4 143 51.7
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-27 127.9 95 63.2
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 2.9e-23 113.2 181 38.1
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 5.5e-22 109.0 180 37.2
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 7.2e-22 108.6 178 36.0
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 4.4e-19 99.4 91 57.1
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 4.4e-19 99.4 136 44.1
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 2.8e-18 96.7 116 47.4
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 3.1e-17 93.2 151 41.7
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 3.4e-16 89.7 183 32.8
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.6e-13 80.9 60 58.3
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 3.6e-13 79.7 93 48.4
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 3.9e-12 76.3 96 45.8
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 3.3e-11 73.2 50 70.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 4.1e-09 66.2 59 54.2
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.6e-08 64.3 153 34.0
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 2.9e-07 60.1 163 33.1


User provided reference genes

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