Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 0.0e+00 1302.7 656 100.0
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 0.0e+00 1282.7 660 98.5
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 0.0e+00 1248.8 656 97.0
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 0.0e+00 1197.2 656 94.1
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 0.0e+00 1155.6 626 94.4
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 0.0e+00 1086.2 625 88.6
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 0.0e+00 1080.9 625 88.2
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 4.5e-312 1074.7 628 89.0
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 3.3e-305 1051.2 619 88.0
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 4.0e-303 1044.3 630 86.2
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 1.3e-301 1039.3 625 86.4
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 2.8e-296 1021.5 625 84.5
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 6.9e-287 990.3 636 80.7
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 6.9e-279 963.8 625 81.1
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 1.0e-258 896.7 623 75.0
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 8.2e-256 887.1 624 72.4
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 4.5e-254 881.3 641 70.0
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 4.5e-254 881.3 641 70.0
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 2.2e-253 879.0 620 72.4
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 8.5e-253 877.1 617 73.3
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 6.7e-250 867.5 614 73.6
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 2.6e-249 865.5 603 73.0
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 3.3e-249 865.1 603 73.0
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 5.7e-249 864.4 630 71.4
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 2.2e-248 862.4 614 73.0
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 2.2e-248 862.4 633 71.2
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 4.8e-248 861.3 622 70.6
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 8.2e-248 860.5 614 73.1
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 2.0e-246 855.9 630 70.8
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 3.5e-246 855.1 609 71.9
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 1.7e-245 852.8 635 70.2
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 1.1e-244 850.1 618 70.7
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 1.1e-244 850.1 619 71.4
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 2.5e-244 849.0 619 71.2
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 3.2e-244 848.6 630 69.7
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 2.7e-243 845.5 618 70.6
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 1.8e-242 842.8 616 70.0
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 3.0e-242 842.0 621 70.0
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 4.0e-242 841.6 614 71.0
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 2.6e-241 839.0 614 69.7
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 3.3e-241 838.6 624 68.9
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 4.4e-241 838.2 545 76.0
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 4.4e-241 838.2 616 70.3
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 5.7e-241 837.8 618 70.1
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 5.7e-241 837.8 610 70.8
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 2.2e-240 835.9 622 70.3
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 3.7e-240 835.1 634 68.3
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 1.8e-239 832.8 622 69.0
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 1.2e-238 830.1 619 69.1
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 2.0e-238 829.3 629 69.8
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 7.7e-238 827.4 619 69.0
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 2.2e-237 825.9 619 70.0
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 2.2e-237 825.9 550 75.8
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 2.9e-237 825.5 615 70.1
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 1.5e-236 823.2 609 70.9
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 2.5e-236 822.4 612 69.6
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 2.5e-236 822.4 624 67.9
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 3.2e-236 822.0 641 67.9
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 7.2e-236 820.8 614 69.2
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 1.2e-235 820.1 624 67.9
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 1.6e-235 819.7 621 68.3
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 1.6e-235 819.7 619 68.8
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 2.1e-235 819.3 657 66.5
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 5.2e-234 814.7 540 74.3
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 1.3e-232 810.1 547 73.9
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 1.3e-232 810.1 619 67.0
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 4.1e-231 805.1 606 68.2
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 4.5e-230 801.6 606 68.0
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 1.7e-229 799.7 616 68.2
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 8.6e-229 797.3 530 75.1
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 4.2e-228 795.0 600 68.5
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 2.8e-227 792.3 612 67.6
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 3.6e-227 792.0 607 68.2
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 6.8e-226 787.7 612 67.2
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 5.7e-225 784.6 776 57.6
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 6.3e-224 781.2 621 67.3
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 1.8e-223 779.6 605 67.8
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 6.6e-221 771.2 611 66.9
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 1.6e-219 766.5 657 63.6
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 2.2e-216 756.1 704 59.7
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 1.9e-215 753.1 620 64.5
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 1.0e-213 747.3 626 62.8
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 2.1e-211 739.6 551 68.2
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 1.2e-209 733.8 625 63.4
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 6.6e-205 718.0 538 68.4
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 7.3e-204 714.5 625 62.7
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 4.1e-199 698.7 511 70.8
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 1.5e-196 690.3 553 63.1
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 1.6e-195 686.8 627 58.1
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 3.6e-195 685.6 758 52.6
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 2.4e-194 682.9 672 57.7
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 1.2e-193 680.6 593 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 2.9e-192 676.0 608 58.9
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 5.6e-188 661.8 584 59.8
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 9.6e-188 661.0 480 72.5
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 4.7e-187 658.7 588 59.7
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 1.8e-186 656.8 626 59.1
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 6.7e-173 611.7 460 67.6
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 1.5e-172 610.5 474 66.2
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 1.0e-144 518.1 398 66.3
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 3.7e-131 473.0 361 65.9
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.0e-125 454.9 375 64.3
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 1.4e-122 444.5 287 75.3
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 1.4e-122 444.5 308 74.7
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 3.8e-120 436.4 583 44.1
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 8.5e-120 435.3 331 67.1
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 3.7e-99 366.7 407 53.1
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.1e-90 338.6 280 65.7
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 1.9e-87 327.8 205 79.5
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 7.6e-84 315.8 253 65.6
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.6e-81 308.1 206 70.4
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 4.3e-71 273.5 464 36.0
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 3.8e-59 233.8 216 60.2
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 1.3e-54 218.8 180 62.2
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.6e-49 201.8 364 38.5
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 1.0e-48 199.1 139 69.8
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 1.3e-46 192.2 108 79.6
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 5.3e-45 186.8 144 66.0
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 6.7e-40 169.9 174 55.7
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.0e-36 158.3 109 66.1
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 9.4e-26 122.9 134 58.2
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 6.7e-24 116.7 177 48.0
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 8.8e-24 116.3 66 74.2
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 1.5e-23 115.5 289 30.4
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 2.8e-14 84.7 160 40.0


User provided reference genes

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