Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 0.0e+00 2074.7 1038 100.0
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 0.0e+00 1991.1 1041 96.4
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1981.1 1041 96.2
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1874.4 1041 92.3
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 0.0e+00 1857.4 1053 90.9
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1737.6 1081 84.0
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 0.0e+00 1616.7 1086 77.1
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 0.0e+00 1590.9 1103 76.6
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 0.0e+00 1584.7 1110 75.4
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 0.0e+00 1578.5 1096 76.7
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 0.0e+00 1425.2 1101 69.2
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 0.0e+00 1328.5 1112 65.5
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 0.0e+00 1209.5 834 74.1
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 2.5e-307 1058.9 1117 52.7
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 6.0e-301 1037.7 1109 52.1
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 1.9e-299 1032.7 1110 52.8
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 3.6e-298 1028.5 1109 52.5
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 5.8e-296 1021.1 1105 51.8
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 9.8e-296 1020.4 1103 51.7
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 2.4e-278 962.6 1097 49.9
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 3.5e-277 958.7 1093 49.6
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 1.7e-276 956.4 1087 49.8
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 2.3e-276 956.1 1062 49.3
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 8.7e-276 954.1 1071 49.1
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 8.1e-274 947.6 1086 50.5
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.1e-273 947.2 1107 48.4
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 4.0e-273 945.3 1086 49.2
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 4.0e-273 945.3 1041 50.7
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 2.6e-272 942.6 1094 48.3
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.3e-271 940.3 1129 47.2
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.7e-271 939.9 1125 47.1
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 3.8e-271 938.7 1112 49.7
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 1.4e-270 936.8 1052 50.3
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 1.9e-270 936.4 1103 49.0
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 3.2e-270 935.6 1094 49.0
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 1.3e-268 930.2 1067 49.1
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.1e-267 927.2 1049 48.0
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 1.1e-265 920.6 1073 48.6
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.1e-265 920.6 1062 49.4
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 4.0e-265 918.7 990 50.5
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 2.0e-264 916.4 1097 47.8
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 2.0e-264 916.4 1087 47.8
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 2.6e-264 916.0 1124 45.7
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 7.6e-264 914.4 1125 47.9
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 2.4e-262 909.4 1066 49.0
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 4.6e-261 905.2 1102 45.8
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.6e-258 896.7 1085 47.9
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 4.5e-256 888.6 1086 46.6
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 9.3e-254 880.9 1130 45.6
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 2.1e-253 879.8 1089 45.6
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 4.6e-253 878.6 1112 45.4
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 6.0e-253 878.2 1082 47.7
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 1.0e-252 877.5 1078 46.4
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 1.3e-250 870.5 520 86.5
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 6.9e-249 864.8 1061 46.9
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 4.5e-248 862.1 1054 45.5
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 1.7e-247 860.1 1101 45.9
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 2.2e-247 859.8 1084 45.2
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 1.1e-243 847.4 780 55.6
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 1.5e-243 847.0 1119 44.2
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 1.6e-242 843.6 992 48.1
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 2.0e-240 836.6 1091 43.6
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 3.4e-240 835.9 1083 45.2
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 1.3e-239 833.9 728 59.9
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 2.5e-238 829.7 1096 44.6
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 1.5e-235 820.5 1055 45.1
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 4.5e-232 808.9 1040 43.7
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 2.1e-229 800.0 858 49.4
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 2.7e-229 799.7 1089 43.4
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 6.7e-228 795.0 748 54.0
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 1.5e-227 793.9 1069 42.6
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 5.7e-227 792.0 739 55.3
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 7.4e-227 791.6 724 58.7
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 4.8e-226 788.9 791 52.3
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 5.2e-220 768.8 688 58.7
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 1.3e-218 764.2 1100 42.0
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 1.7e-215 753.8 925 46.3
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 2.7e-213 746.5 752 51.2
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 1.5e-211 740.7 741 52.4
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.6e-211 740.0 755 50.2
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 8.3e-202 708.4 831 49.2
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.3e-199 700.3 1026 42.9
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 7.2e-198 695.3 900 44.1
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 8.3e-186 655.2 767 47.7
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 3.5e-168 596.7 608 52.1
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 6.4e-154 549.3 997 35.3
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 1.0e-151 542.0 687 42.8
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 1.3e-135 488.4 700 44.7
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 6.5e-122 443.0 885 32.7
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 3.7e-109 400.6 536 46.3
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 2.2e-106 391.3 365 58.9
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 4.5e-91 340.5 653 36.3
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 1.8e-87 328.6 1084 29.4
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.6e-64 252.3 536 32.6
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 1.4e-36 159.5 129 57.4
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 5.4e-36 157.5 190 50.5
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.6e-35 156.0 185 50.8
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 1.7e-34 152.5 134 58.2
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 5.1e-34 151.0 168 51.2
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 4.0e-31 141.4 93 64.5
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 9.0e-31 140.2 99 63.6
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.2e-27 129.8 160 51.9
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 9.6e-25 120.2 75 61.3
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.8e-24 118.6 160 48.1
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 2.4e-23 115.5 248 35.5
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 7.6e-22 110.5 80 56.2
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 7.9e-19 100.5 383 24.8
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 6.7e-18 97.4 78 62.8
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 7.6e-14 84.0 130 38.5
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 3.8e-13 81.6 70 57.1
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.4e-12 79.7 69 59.4
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.2e-12 78.2 69 58.0
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 4.6e-11 74.7 74 50.0
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 1.8e-10 72.8 243 27.2
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 1.5e-09 69.7 430 22.8
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 3.3e-09 68.6 430 22.6
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 4.3e-09 68.2 274 26.3
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 1.3e-08 66.6 359 23.7
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 2.8e-08 65.5 241 24.1
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 2.8e-08 65.5 198 26.3
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 2.8e-08 65.5 200 26.0
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 4.8e-08 64.7 324 23.8
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 4.8e-08 64.7 190 26.3
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 6.3e-08 64.3 198 23.7
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 8.2e-08 63.9 197 25.9
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 1.1e-07 63.5 401 23.2
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.4e-07 63.2 197 24.9
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 2.4e-07 62.4 193 26.4
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.4e-07 62.4 142 33.1
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 2.4e-07 62.4 313 24.0
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 3.1e-07 62.0 194 25.8
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 3.1e-07 62.0 315 23.5
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 3.1e-07 62.0 229 25.3
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 4.1e-07 61.6 186 30.1
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 5.3e-07 61.2 317 24.9
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 6.9e-07 60.8 313 24.0
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 9.0e-07 60.5 194 25.8
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 9.0e-07 60.5 192 25.0
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 1.2e-06 60.1 325 24.9
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.5e-06 59.7 233 24.0
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 1.5e-06 59.7 192 26.6
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 1.5e-06 59.7 372 23.7
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 1.5e-06 59.7 195 26.2
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 2.0e-06 59.3 261 24.5
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 2.0e-06 59.3 194 23.2
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 2.0e-06 59.3 344 25.0
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 2.6e-06 58.9 346 24.3
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 2.6e-06 58.9 308 25.3
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 2.6e-06 58.9 190 27.4
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 2.6e-06 58.9 143 30.8
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 3.4e-06 58.5 434 23.3
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 4.5e-06 58.2 316 23.1
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 4.5e-06 58.2 316 23.1
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 4.5e-06 58.2 315 22.2
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 4.5e-06 58.2 194 26.8
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 5.9e-06 57.8 197 22.3
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 5.9e-06 57.8 197 22.3
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 5.9e-06 57.8 198 24.2
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 5.9e-06 57.8 198 23.7
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 5.9e-06 57.8 197 23.4
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 5.9e-06 57.8 312 23.4
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 7.7e-06 57.4 333 24.9
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 7.7e-06 57.4 196 28.6
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 7.7e-06 57.4 203 25.1


User provided reference genes

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