Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 2.5e-181 638.6 317 100.0
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 2.5e-181 638.6 317 100.0
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 2.5e-181 638.6 317 100.0
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 4.8e-161 571.2 317 91.2
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 6.7e-155 550.8 320 87.8
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 2.0e-151 539.3 333 84.7
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 4.5e-151 538.1 333 84.4
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 4.2e-149 531.6 331 84.0
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 2.1e-148 529.3 324 84.0
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 3.0e-147 525.4 326 83.1
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 4.0e-147 525.0 333 82.3
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 7.5e-146 520.8 324 82.1
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 6.3e-145 517.7 327 82.9
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 6.3e-145 517.7 327 82.9
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 6.3e-145 517.7 327 82.9
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 6.3e-145 517.7 336 81.5
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 7.7e-143 510.8 329 80.5
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 1.5e-141 506.5 336 81.0
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 6.8e-131 471.1 331 74.0
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 6.2e-116 421.4 324 65.4
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 3.4e-114 415.6 316 67.1
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 5.8e-114 414.8 322 65.5
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 5.8e-114 414.8 322 65.5
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 9.8e-114 414.1 325 65.8
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.7e-113 413.3 316 66.5
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 4.1e-112 408.7 317 65.0
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 1.6e-111 406.8 319 66.5
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 6.0e-111 404.8 317 66.2
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 6.0e-111 404.8 321 66.0
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 7.8e-111 404.4 324 64.2
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 1.7e-110 403.3 324 63.9
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 2.3e-110 402.9 321 64.5
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 5.1e-110 401.7 320 64.4
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 6.6e-110 401.4 326 64.1
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 8.6e-110 401.0 333 63.4
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 8.6e-110 401.0 332 62.3
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 8.6e-110 401.0 326 64.1
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.5e-109 400.2 321 64.2
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.5e-109 400.2 320 64.7
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 2.5e-109 399.4 315 64.4
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 3.3e-109 399.1 331 63.4
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 4.3e-109 398.7 320 64.1
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 4.3e-109 398.7 350 61.7
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 7.3e-109 397.9 321 62.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 7.3e-109 397.9 321 63.2
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 7.3e-109 397.9 325 63.7
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.2e-108 397.1 342 60.8
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 2.1e-108 396.4 340 61.2
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 4.7e-108 395.2 320 62.2
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 4.7e-108 395.2 340 60.9
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 6.2e-108 394.8 320 64.7
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 8.1e-108 394.4 335 60.0
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.4e-107 393.7 319 63.3
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 2.3e-107 392.9 321 63.6
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 3.1e-107 392.5 337 60.5
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 3.1e-107 392.5 324 63.3
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 3.1e-107 392.5 335 59.1
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 5.2e-107 391.7 319 63.3
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 6.8e-107 391.3 286 67.5
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 2.0e-106 389.8 317 62.1
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.0e-106 389.8 320 62.2
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 5.8e-106 388.3 361 58.4
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.7e-105 386.7 335 58.2
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 2.2e-105 386.3 265 68.7
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 8.4e-105 384.4 336 59.8
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 5.4e-104 381.7 319 63.6
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.2e-103 380.6 319 63.3
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 1.6e-103 380.2 327 60.6
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.6e-103 380.2 315 62.2
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 1.6e-103 380.2 321 62.6
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 2.7e-103 379.4 344 59.6
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 4.6e-103 378.6 322 63.0
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 6.0e-103 378.3 327 61.5
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.0e-102 377.5 325 59.7
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 5.1e-102 375.2 322 62.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 8.6e-102 374.4 306 65.0
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 1.6e-100 370.2 266 66.9
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 8.1e-100 367.9 294 62.6
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 8.9e-99 364.4 314 61.8
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 2.0e-98 363.2 292 64.7
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 3.4e-98 362.5 306 58.8
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 4.9e-97 358.6 296 63.5
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 4.9e-97 358.6 296 62.2
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 6.4e-97 358.2 361 54.3
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 8.4e-97 357.8 260 63.8
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.4e-96 357.1 316 61.4
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 1.4e-96 357.1 314 59.9
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 2.4e-96 356.3 277 65.0
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.4e-96 356.3 314 57.6
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.0e-94 350.9 339 56.6
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 3.0e-94 349.4 291 63.9
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.9e-93 346.7 241 68.5
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 4.3e-93 345.5 347 53.6
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 1.6e-92 343.6 318 56.9
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 3.6e-92 342.4 302 60.3
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.8e-91 340.1 264 62.5
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 2.4e-91 339.7 263 60.1
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 6.9e-91 338.2 271 59.8
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 2.6e-90 336.3 266 60.5
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 3.4e-90 335.9 309 60.2
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.3e-89 334.0 211 75.8
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 6.4e-89 331.6 211 74.4
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 6.0e-87 325.1 206 74.3
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.4e-83 313.9 290 58.3
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 3.1e-83 312.8 373 48.3
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.3e-81 307.4 288 56.2
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.1e-80 304.3 274 60.9
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 5.5e-80 302.0 254 56.7
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 9.3e-80 301.2 269 59.1
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 2.7e-79 299.7 226 60.6
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.3e-76 290.8 236 58.1
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 2.8e-76 289.7 241 57.3
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 4.0e-75 285.8 236 58.1
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.9e-73 279.6 317 49.2
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 3.1e-67 259.6 278 50.4
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 7.2e-64 248.4 227 61.7
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 3.6e-63 246.1 210 62.4
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.9e-61 240.4 215 53.0
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 2.8e-60 236.5 224 58.9
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 2.4e-59 233.4 167 68.9
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 4.1e-59 232.6 219 51.6
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 2.5e-56 223.4 183 57.4
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 3.4e-50 203.0 233 48.9
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.7e-44 184.1 192 51.0
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 4.5e-42 176.0 108 76.9
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.5e-40 171.0 197 47.7
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-38 164.5 197 46.2
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 2.3e-38 163.7 168 53.6
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.5e-37 158.7 197 46.2
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.2e-36 155.2 197 44.2
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 2.4e-35 153.7 100 72.0
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 9.4e-32 141.7 102 70.6
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 9.4e-32 141.7 96 71.9
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.6e-31 141.0 197 42.1
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.1e-31 139.0 176 41.5
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 6.8e-30 135.6 98 70.4
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 1.6e-26 124.4 77 74.0
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.5e-26 122.9 190 37.4
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 2.5e-24 117.1 163 44.2
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.2e-24 116.3 223 33.2
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-23 114.8 197 35.0
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.6e-23 114.4 139 44.6
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.7e-23 112.8 176 36.4
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 6.1e-23 112.5 83 62.7
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 1.8e-22 110.9 255 34.1
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.8e-20 103.6 197 33.5
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 2.8e-15 87.0 180 31.1
AT2G10550 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.0e-14 85.1 97 61.9
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 1.8e-11 74.3 197 29.9
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 4.6e-10 69.7 66 53.0
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 1.6e-07 61.2 57 52.6
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.1e-07 60.8 93 35.5


User provided reference genes

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