Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 6.1e-147 524.2 288 100.0
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.7e-128 463.0 302 87.4
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.7e-128 463.0 301 87.0
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 3.7e-128 461.8 302 86.4
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 3.7e-128 461.8 301 87.0
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.0e-125 453.8 301 86.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.0e-125 453.8 301 86.0
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.0e-125 453.8 301 86.0
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 8.6e-117 424.1 303 78.5
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 7.3e-116 421.0 304 77.0
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 9.6e-116 420.6 303 79.5
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 9.9e-113 410.6 302 77.2
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 3.2e-111 405.6 302 77.2
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.6e-110 403.3 303 79.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 2.7e-110 402.5 301 74.4
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 3.5e-110 402.1 302 76.5
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 4.6e-110 401.7 301 74.4
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 4.6e-110 401.7 303 76.6
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 6.0e-110 401.4 304 72.4
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.9e-109 398.7 301 74.1
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.9e-108 396.4 302 74.2
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.9e-108 396.4 302 74.2
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.3e-108 394.4 302 73.5
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 3.6e-107 392.1 303 71.0
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 3.6e-107 392.1 302 71.2
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.4e-106 390.2 311 69.1
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 1.8e-106 389.8 314 69.4
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 4.0e-106 388.7 304 70.4
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 9.0e-106 387.5 303 72.6
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.2e-105 387.1 304 71.4
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 1.5e-105 386.7 303 74.9
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 1.5e-105 386.7 300 73.0
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 7.6e-105 384.4 302 70.9
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 7.6e-105 384.4 303 72.6
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 9.9e-105 384.0 304 72.0
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 9.9e-105 384.0 309 69.3
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.3e-104 383.6 304 73.0
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.7e-104 383.3 304 69.4
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 3.8e-104 382.1 303 72.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 4.9e-104 381.7 300 72.3
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 1.1e-103 380.6 302 69.5
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.9e-103 379.8 305 71.8
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 4.2e-103 378.6 301 68.8
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 7.1e-103 377.9 304 68.8
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.2e-102 377.1 302 68.2
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 2.7e-102 375.9 304 74.0
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 4.6e-102 375.2 303 70.6
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 4.6e-102 375.2 304 71.7
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.6e-102 375.2 314 67.5
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 4.6e-102 375.2 304 74.3
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 6.0e-102 374.8 305 68.9
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 6.0e-102 374.8 305 68.9
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 7.9e-102 374.4 305 68.9
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 7.9e-102 374.4 304 70.4
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.0e-101 374.0 312 67.3
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 1.7e-101 373.2 305 68.5
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.9e-101 372.1 301 69.1
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 3.9e-101 372.1 303 71.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 3.9e-101 372.1 303 71.3
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 3.9e-101 372.1 303 69.3
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 6.6e-101 371.3 306 68.3
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 2.5e-100 369.4 303 65.0
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 5.6e-100 368.2 303 67.3
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 7.4e-100 367.9 304 67.4
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 7.4e-100 367.9 300 71.0
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 7.4e-100 367.9 303 70.3
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 7.4e-100 367.9 305 67.5
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.3e-99 367.1 303 71.3
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 1.6e-99 366.7 304 67.1
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 2.8e-99 365.9 304 72.7
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.8e-99 365.9 302 64.9
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.8e-99 365.9 304 67.1
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 6.2e-99 364.8 303 70.0
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 6.2e-99 364.8 297 68.0
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.1e-98 364.0 303 65.0
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.8e-98 363.2 304 66.8
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 4.0e-98 362.1 301 65.4
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 2.6e-97 359.4 303 66.3
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 3.4e-97 359.0 309 63.8
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 7.6e-97 357.8 303 66.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 7.6e-97 357.8 303 66.3
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 7.6e-97 357.8 285 71.2
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 9.9e-97 357.5 251 77.3
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.9e-97 357.5 302 66.2
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.7e-96 356.7 303 65.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.9e-96 355.9 303 68.6
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 6.4e-96 354.8 312 64.4
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 8.4e-96 354.4 302 69.5
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.4e-96 354.4 303 66.0
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.1e-95 354.0 301 68.4
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.4e-95 353.6 301 65.8
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.4e-95 353.6 306 66.0
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.4e-95 353.6 306 66.0
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.4e-95 353.6 306 66.0
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.4e-95 353.6 301 64.5
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.4e-95 353.6 305 68.2
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 4.2e-95 352.1 303 67.7
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 4.2e-95 352.1 301 65.8
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 2.1e-94 349.7 301 65.1
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 7.9e-94 347.8 316 63.9
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.3e-93 346.3 314 62.1
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 3.0e-93 345.9 312 63.5
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 8.7e-93 344.4 301 66.4
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.5e-92 343.6 303 63.7
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.5e-92 343.6 304 68.8
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.9e-92 343.2 299 64.2
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 3.7e-91 339.0 304 68.1
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 4.0e-90 335.5 301 65.8
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 2.5e-87 326.2 312 64.4
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 3.2e-87 325.9 298 62.8
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 7.1e-87 324.7 303 59.7
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 4.6e-86 322.0 303 61.4
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.3e-85 319.7 305 58.7
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.9e-85 318.9 278 67.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.5e-81 307.0 302 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.0e-80 304.3 302 59.6
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.8e-75 286.2 251 61.8
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 9.0e-74 281.2 323 52.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.6e-73 279.6 291 57.7
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 8.5e-72 274.6 304 51.6
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.2e-65 254.2 195 66.2
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 1.6e-62 243.8 302 48.0
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 3.6e-62 242.7 302 51.0
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 1.0e-61 241.1 297 49.2
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 5.9e-57 225.3 199 63.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.2e-56 223.4 298 47.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 2.3e-53 213.4 220 64.5
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 5.2e-53 212.2 301 49.5
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.6e-49 200.7 204 62.3
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.7e-48 197.2 134 76.9
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 3.0e-45 186.4 307 41.7
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 3.4e-44 183.0 193 58.0
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-39 167.5 193 57.5
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 4.7e-38 162.5 284 40.5
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.8e-37 160.6 198 48.5
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.4e-36 156.0 167 60.5
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.0e-34 148.7 267 44.6
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 2.0e-33 147.1 231 48.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-31 140.6 181 48.1
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 6.8e-29 132.1 87 71.3
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 2.2e-27 127.1 98 67.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 7.0e-26 122.1 101 87.1
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 2.0e-25 120.6 101 87.1
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 3.5e-25 119.8 111 59.5
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 3.9e-24 116.3 154 53.2
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 2.6e-20 103.6 58 81.0
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 7.5e-20 102.1 82 62.2
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 1.6e-17 94.4 56 80.4
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 5.6e-15 85.9 217 36.4
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 3.4e-12 76.6 118 55.9
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.3e-11 74.7 129 48.1
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.7e-11 74.3 127 53.5
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 4.9e-11 72.8 68 64.7
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 4.9e-11 72.8 43 79.1
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.3e-08 63.9 51 70.6
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.9e-07 60.8 149 40.9


User provided reference genes

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