Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p44690 Brassica napus HOM05D002336 ORTHO05D002526 2.1e-58 228.8 114 100.0
C01p04670 Brassica napus HOM05D002336 ORTHO05D002526 2.6e-48 195.3 146 71.2
C04p48650 Brassica napus HOM05D002336 ORTHO05D021700 5.8e-48 194.1 148 71.6
BolC6t36106H Brassica oleracea HOM05D002336 ORTHO05D021700 1.1e-43 179.9 156 65.4
C01p13710 Brassica napus HOM05D002336 ORTHO05D021700 3.6e-42 174.9 161 62.7
C02p15820 Brassica napus HOM05D002336 ORTHO05D021700 4.7e-26 121.3 135 56.3
BolC1t00450H Brassica oleracea HOM05D002336 ORTHO05D002526 3.3e-19 98.6 48 97.9
C02p26420 Brassica napus HOM05D002336 ORTHO05D021700 4.2e-14 81.6 87 57.5
BolC2t08715H Brassica oleracea HOM05D002336 ORTHO05D002526 4.6e-13 78.2 86 54.7
BcaC05g26583 Brassica carinata HOM05D002336 ORTHO05D002526 1.9e-11 72.8 41 80.5
BolC1t04438H Brassica oleracea HOM05D002336 ORTHO05D002526 2.5e-11 72.4 36 94.4
A07p02210 Brassica napus HOM05D002336 ORTHO05D002526 9.6e-11 70.5 40 80.0
BolC5t31351H Brassica oleracea HOM05D002336 ORTHO05D002526 2.1e-10 69.3 49 69.4
BcaB01g05556 Brassica carinata HOM05D002336 ORTHO05D002526 6.2e-10 67.8 37 83.8
BcaC05g26588 Brassica carinata HOM05D002336 ORTHO05D002526 8.1e-10 67.4 47 70.2
BcaC03g13284 Brassica carinata HOM05D002336 ORTHO05D002526 1.1e-09 67.0 36 86.1
BraA07t28014Z Brassica rapa HOM05D002336 ORTHO05D002526 1.4e-09 66.6 40 77.5
BcaC05g28573 Brassica carinata HOM05D002336 ORTHO05D002526 2.4e-09 65.9 51 68.6
BcaB05g21520 Brassica carinata HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
BcaB08g37172 Brassica carinata HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
A02p00240 Brassica napus HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
A03p04330 Brassica napus HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
A10p27560 Brassica napus HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
C09p67630 Brassica napus HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
BolC2t06378H Brassica oleracea HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
BolC3t13012H Brassica oleracea HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
BolC9t59525H Brassica oleracea HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
BraA02t05008Z Brassica rapa HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
BraA03t09777Z Brassica rapa HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
BraA10t44808Z Brassica rapa HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
Sp6g33490 Schrenkiella parvula HOM05D002336 ORTHO05D002526 3.1e-09 65.5 36 83.3
AL6G20340 Arabidopsis lyrata HOM05D002336 ORTHO05D002526 9.0e-09 63.9 36 80.6
AT5G09920 Arabidopsis thaliana HOM05D002336 ORTHO05D002526 9.0e-09 63.9 36 80.6
Carub.0006s0836 Capsella rubella HOM05D002336 ORTHO05D002526 9.0e-09 63.9 36 80.6
CARHR203410 Cardamine hirsuta HOM05D002336 ORTHO05D002526 9.0e-09 63.9 36 80.6
BcaC05g26591 Brassica carinata HOM05D002336 ORTHO05D002526 2.0e-08 62.8 38 76.3
CDE08G1499 Ceratophyllum demersum HOM05D002336 ORTHO05D002526 2.0e-08 62.8 39 71.8
Migut.N02435 Erythranthe guttata HOM05D002336 ORTHO05D002526 2.0e-08 62.8 36 75.0
FAN19G2422 Fragaria x ananassa HOM05D002336 ORTHO05D002526 2.0e-08 62.8 37 73.0
FAN23G2858 Fragaria x ananassa HOM05D002336 ORTHO05D002526 2.0e-08 62.8 37 73.0
FAN26G2884 Fragaria x ananassa HOM05D002336 ORTHO05D002526 2.0e-08 62.8 37 73.0
FAN28G0203 Fragaria x ananassa HOM05D002336 ORTHO05D002526 2.0e-08 62.8 37 73.0
BolC5t31354H Brassica oleracea HOM05D002336 ORTHO05D002526 2.6e-08 62.4 49 63.3
C03p04780 Brassica napus HOM05D002336 ORTHO05D002526 3.4e-08 62.0 36 77.8
Dinv42686 Davidia involucrata HOM05D002336 ORTHO05D002526 4.5e-08 61.6 35 77.1
THA.LOC104799288 Tarenaya hassleriana HOM05D002336 ORTHO05D002526 4.5e-08 61.6 36 77.8
ClCG11G005590 Citrullus lanatus HOM05D002336 ORTHO05D002526 5.8e-08 61.2 36 75.0
Duzib187G0505 Durio zibethinus HOM05D002336 ORTHO05D002526 5.8e-08 61.2 35 77.1
Sed0001348 Sechium edule HOM05D002336 ORTHO05D002526 5.8e-08 61.2 36 75.0
Sed0026127 Sechium edule HOM05D002336 ORTHO05D002526 5.8e-08 61.2 36 75.0
MELO3C020022.2 Cucumis melo HOM05D002336 ORTHO05D002526 7.6e-08 60.8 36 72.2
CsaV3_6G002410 Cucumis sativus L. HOM05D002336 ORTHO05D002526 7.6e-08 60.8 36 72.2
MBI06_g12321_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 7.6e-08 60.8 36 75.0
MSTRG.17671 Avicennia marina HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
C05p46750 Brassica napus HOM05D002336 ORTHO05D002526 9.9e-08 60.5 43 67.4
CANSAT01G2839 Cannabis sativa HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Cpa.g.sc191.12 Carica papaya HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
CiPaw.04G091200 Carya illinoinensis HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Ciclev10026735m.g Citrus clementina HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Duzib264G0264 Durio zibethinus HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
FvH4_1g22750 Fragaria vesca HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Gohir.A09G214900 Gossypium hirsutum HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Gohir.A10G084400 Gossypium hirsutum HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Gohir.D09G217400 Gossypium hirsutum HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Gohir.D10G104250 Gossypium hirsutum HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Gorai.006G238100 Gossypium raimondii HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Gorai.011G113800 Gossypium raimondii HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
MD15G1331500 Malus domestica HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Manes.08G141900 Manihot esculenta HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Manes.09G146500 Manihot esculenta HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Potri.005G084900 Populus trichocarpa HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Potri.007G080400 Populus trichocarpa HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Prupe.6G171500 Prunus persica HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
QL06p031971 Quercus lobata HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
RcHm_v2.0_Chr2g0117051 Rosa chinensis HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
SalBow6G1409 Salvia bowleyana HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Sc15g0006500 Simmondsia chinensis HOM05D002336 ORTHO05D002526 9.9e-08 60.5 34 76.5
Thecc.01G114000 Theobroma cacao HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
TWI53G1839 Tripterygium wilfordii HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
TAR628G0102 Trochodendron aralioides HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
GSVIVG01020782001 Vitis vinifera HOM05D002336 ORTHO05D002526 9.9e-08 60.5 36 72.2
Actinidia27104 Actinidia chinensis HOM05D002336 ORTHO05D002526 1.3e-07 60.1 34 76.5
Aqoxy6G00465 Aquilegia oxysepala HOM05D002336 ORTHO05D002526 1.3e-07 60.1 34 76.5
CSS0019375 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 1.3e-07 60.1 34 76.5
Cc07_g16330 Coffea canephora HOM05D002336 ORTHO05D002526 1.3e-07 60.1 34 76.5
Eucgr.I00318 Eucalyptus grandis HOM05D002336 ORTHO05D002526 1.3e-07 60.1 34 76.5
Hma1.2p1_0981F.1_g243690 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 1.3e-07 60.1 34 76.5
Hma1.2p1_1034F.1_g250410 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 1.3e-07 60.1 34 76.5
Rhsim02G0083000 Rhododendron simsii HOM05D002336 ORTHO05D002526 1.3e-07 60.1 34 76.5
Ah.15g091530 Amaranthus hybridus HOM05D002336 ORTHO05D002526 1.7e-07 59.7 34 79.4
ATR0618G064 Amborella trichopoda HOM05D002336 ORTHO05D002526 1.7e-07 59.7 36 69.4
CDE04G0107 Ceratophyllum demersum HOM05D002336 ORTHO05D002526 1.7e-07 59.7 34 76.5
AUR62008826 Chenopodium quinoa HOM05D002336 ORTHO05D002526 1.7e-07 59.7 34 79.4
AUR62025415 Chenopodium quinoa HOM05D002336 ORTHO05D002526 1.7e-07 59.7 34 79.4
arahy.Tifrunner.gnm1.ann1.34WJMU Arachis hypogaea HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
arahy.Tifrunner.gnm1.ann1.P3KF1U Arachis hypogaea HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
Ca_22452_v3 Cicer arietinum L. HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
Ca_23195_v3 Cicer arietinum L. HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
HanXRQChr15g0471591 Helianthus annuus HOM05D002336 ORTHO05D002526 2.2e-07 59.3 34 73.5
Lj3g0026600 Lotus japonicus HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
Lalb_Chr07g0194481 Lupinus albus HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
Medtr8g011890 Medicago truncatula HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
Phvul.010G030200 Phaseolus vulgaris HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
Psat4g205400 Pisum sativum HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
TPR.G24320 Trifolium pratense HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
TPR.G29359 Trifolium pratense HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
VMungo0331G0164 Vigna mungo HOM05D002336 ORTHO05D002526 2.2e-07 59.3 36 69.4
CSS0001624 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 2.9e-07 58.9 34 76.5
CSS0043110 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 2.9e-07 58.9 34 76.5
CANSAT01G3015 Cannabis sativa HOM05D002336 ORTHO05D002526 2.9e-07 58.9 35 68.6
DCAR_014263 Daucus carota HOM05D002336 ORTHO05D002526 2.9e-07 58.9 34 73.5
Glyma.03G088500 Glycine max HOM05D002336 ORTHO05D002526 2.9e-07 58.9 34 73.5
Glyma.16G084800 Glycine max HOM05D002336 ORTHO05D002526 2.9e-07 58.9 34 73.5
Hund08720 Selenicereus undatus HOM05D002336 ORTHO05D002526 2.9e-07 58.9 34 73.5
unitig_699.g19459 Utricularia gibba HOM05D002336 ORTHO05D002526 2.9e-07 58.9 36 69.4
EL10Ac7g17722 Beta vulgaris HOM05D002336 ORTHO05D002526 3.8e-07 58.5 34 79.4
ClCG11G005330 Citrullus lanatus HOM05D002336 ORTHO05D002526 3.8e-07 58.5 36 69.4
Lsat_1_v5_gn_2_67161 Lactuca sativa HOM05D002336 ORTHO05D002526 3.8e-07 58.5 34 73.5
PGR102G1725 Punica granatum HOM05D002336 ORTHO05D002526 3.8e-07 58.5 36 69.4
Atru.chr8.85 Acer truncatum HOM05D002336 ORTHO05D002526 4.9e-07 58.2 31 80.6
Oeu031443.2 Olea europaea HOM05D002336 ORTHO05D002526 4.9e-07 58.2 37 70.3
HPP92_022163 Vanilla planifolia HOM05D002336 ORTHO05D002526 4.9e-07 58.2 36 69.4
CAN.G1463.20 Capsicum annuum HOM05D002336 ORTHO05D002526 6.4e-07 57.8 34 73.5
Glyma.05G189100 Glycine max HOM05D002336 ORTHO05D002526 6.4e-07 57.8 34 70.6
CsaV3_5G039120 Cucumis sativus L. HOM05D002336 ORTHO05D002526 8.4e-07 57.4 36 69.4
Aa31LG3G17210 Aethionema arabicum HOM05D002336 ORTHO05D002526 1.4e-06 56.6 36 69.4
ECA238G1091 Erigeron canadensis HOM05D002336 ORTHO05D002526 1.4e-06 56.6 34 70.6
Nitab4.5_0000875g0080 Nicotiana tabacum HOM05D002336 ORTHO05D002526 1.9e-06 56.2 34 70.6
Nitab4.5_0002183g0070 Nicotiana tabacum HOM05D002336 ORTHO05D002526 1.9e-06 56.2 34 70.6
PSO170G6293 Papaver somniferum HOM05D002336 ORTHO05D002526 1.9e-06 56.2 31 80.6
PSO210G1518 Papaver somniferum HOM05D002336 ORTHO05D002526 1.9e-06 56.2 31 80.6
Solyc06g073870.4 Solanum lycopersicum HOM05D002336 ORTHO05D002526 1.9e-06 56.2 34 70.6
Sopen06g030280 Solanum pennellii HOM05D002336 ORTHO05D002526 1.9e-06 56.2 34 70.6
PGSC0003DMG400005907 Solanum tuberosum HOM05D002336 ORTHO05D002526 1.9e-06 56.2 34 70.6
MBI12_g40059_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 2.4e-06 55.8 43 60.5
Nn5g28888 Nelumbo nucifera HOM05D002336 ORTHO05D002526 4.2e-06 55.1 37 62.2
Peaxi162Scf00098g01412 Petunia axillaris HOM05D002336 ORTHO05D002526 4.2e-06 55.1 34 70.6
vmacro15951 Vaccinium macrocarpon HOM05D002336 ORTHO05D002526 5.5e-06 54.7 34 70.6
BcaNung06948 Brassica carinata HOM05D002336 ORTHO05D002526 7.1e-06 54.3 36 72.2
Glyma.08G146800 Glycine max HOM05D002336 ORTHO05D002526 7.1e-06 54.3 35 65.7
RcHm_v2.0_Chr6g0293821 Rosa chinensis HOM05D002336 ORTHO05D002526 9.3e-06 53.9 35 65.7


User provided reference genes

Program Settings