Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p29530 Brassica napus HOM05D004425 ORTHO05D042383 4.6e-106 387.9 195 100.0
BolC1t02895H Brassica oleracea HOM05D004425 ORTHO05D042383 4.6e-106 387.9 195 100.0
BcaC03g15852 Brassica carinata HOM05D004425 ORTHO05D024261 2.1e-34 149.8 131 64.9
BraA05t21374Z Brassica rapa HOM05D004425 ORTHO05D024261 3.1e-33 146.0 154 55.2
A01p06600 Brassica napus HOM05D004425 ORTHO05D024261 6.0e-29 131.7 115 64.3
C03p88340 Brassica napus HOM05D004425 ORTHO05D005783 9.0e-25 117.9 154 48.1
BcaC01g01120 Brassica carinata HOM05D004425 ORTHO05D095244 9.3e-22 107.8 78 67.9
A05p24870 Brassica napus HOM05D004425 ORTHO05D005783 7.4e-19 98.2 147 42.9
C03p29020 Brassica napus HOM05D004425 ORTHO05D024261 7.6e-16 88.2 129 48.8
BolC3t15257H Brassica oleracea HOM05D004425 ORTHO05D024261 7.6e-16 88.2 129 48.8
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 1.7e-15 87.0 205 34.1
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 4.9e-15 85.5 202 33.2
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 1.9e-14 83.6 201 32.8
BcaC08g46598 Brassica carinata HOM05D004425 ORTHO05D005783 2.4e-14 83.2 229 32.3
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 1.0e-12 77.8 199 31.7
Sp5g26750 Schrenkiella parvula HOM05D004425 ORTHO05D005783 7.4e-11 71.6 54 64.8
C06p45770 Brassica napus HOM05D004425 ORTHO05D005783 9.6e-11 71.2 54 64.8
BolC6t39629H Brassica oleracea HOM05D004425 ORTHO05D005783 9.6e-11 71.2 54 64.8
A07p37870 Brassica napus HOM05D004425 ORTHO05D005783 1.3e-10 70.9 54 63.0
BraA07t31352Z Brassica rapa HOM05D004425 ORTHO05D005783 1.3e-10 70.9 54 63.0
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 2.1e-10 70.1 54 61.1
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 3.1e-09 66.2 171 33.9
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 3.4e-08 62.8 84 44.0
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 3.4e-08 62.8 51 56.9
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 1.7e-07 60.5 50 58.0
arahy.Tifrunner.gnm1.ann1.GMAE2R Arachis hypogaea HOM05D004425 ORTHO05D005783 2.9e-07 59.7 102 37.3
Lj5g0021674 Lotus japonicus HOM05D004425 ORTHO05D005783 2.9e-07 59.7 63 49.2
arahy.Tifrunner.gnm1.ann1.9T1T9I Arachis hypogaea HOM05D004425 ORTHO05D005783 3.8e-07 59.3 102 37.3
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 3.8e-07 59.3 63 49.2
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 4.9e-07 58.9 94 39.4
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 6.5e-07 58.5 94 39.4
Ca_10656_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 6.5e-07 58.5 49 59.2
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 6.5e-07 58.5 84 41.7
Lj7A385T59 Lonicera japonica HOM05D004425 ORTHO05D005783 6.5e-07 58.5 90 38.9
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 6.5e-07 58.5 49 59.2
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 6.5e-07 58.5 52 55.8
Thecc.08G161900 Theobroma cacao HOM05D004425 ORTHO05D005783 6.5e-07 58.5 49 59.2
HPP92_022923 Vanilla planifolia HOM05D004425 ORTHO05D005783 6.5e-07 58.5 60 51.7
HPP92_022945 Vanilla planifolia HOM05D004425 ORTHO05D005783 6.5e-07 58.5 60 51.7
Zm00001eb160710 Zea mays HOM05D004425 ORTHO05D005783 6.5e-07 58.5 46 56.5
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 8.4e-07 58.2 84 41.7
DCAR_001192 Daucus carota HOM05D004425 ORTHO05D005783 8.4e-07 58.2 60 50.0
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 8.4e-07 58.2 63 47.6
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 8.4e-07 58.2 49 57.1
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 1.1e-06 57.8 49 57.1
CSS0010963 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 1.1e-06 57.8 49 57.1
CSS0011525 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 1.1e-06 57.8 49 57.1
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 1.1e-06 57.8 49 57.1
SalBow7G3651 Salvia bowleyana HOM05D004425 ORTHO05D005783 1.1e-06 57.8 51 54.9
Aqoxy5G02018 Aquilegia oxysepala HOM05D004425 ORTHO05D005783 1.4e-06 57.4 49 55.1
Lalb_Chr01g0009831 Lupinus albus HOM05D004425 ORTHO05D005783 1.4e-06 57.4 49 55.1
MBI01_g29006_MAGBIO Magnolia biondii HOM05D004425 ORTHO05D005783 1.4e-06 57.4 94 37.2
PSO170G0918 Papaver somniferum HOM05D004425 ORTHO05D005783 1.4e-06 57.4 94 37.2
PSO210G1911 Papaver somniferum HOM05D004425 ORTHO05D005783 1.4e-06 57.4 94 37.2
COL.COLO4_13726 Corchorus olitorius HOM05D004425 ORTHO05D005783 1.9e-06 57.0 49 57.1
Duzib093G0931 Durio zibethinus HOM05D004425 ORTHO05D005783 1.9e-06 57.0 49 57.1
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 1.9e-06 57.0 49 57.1
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 1.9e-06 57.0 55 52.7
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 1.9e-06 57.0 42 64.3
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 2.5e-06 56.6 39 66.7
ECA232G4004 Erigeron canadensis HOM05D004425 ORTHO05D005783 2.5e-06 56.6 39 64.1
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 2.5e-06 56.6 84 41.7
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 2.5e-06 56.6 84 41.7
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 2.5e-06 56.6 53 52.8
Lsat_1_v5_gn_9_42380 Lactuca sativa HOM05D004425 ORTHO05D005783 2.5e-06 56.6 49 55.1
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 2.5e-06 56.6 49 55.1
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 2.5e-06 56.6 94 38.3
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 2.5e-06 56.6 49 55.1
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 2.5e-06 56.6 84 41.7
Zm00001eb294080 Zea mays HOM05D004425 ORTHO05D005783 2.5e-06 56.6 46 54.3
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 3.2e-06 56.2 74 44.6
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 3.2e-06 56.2 84 41.7
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 3.2e-06 56.2 84 41.7
FAN27G1841 Fragaria x ananassa HOM05D004425 ORTHO05D005783 3.2e-06 56.2 84 41.7
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 3.2e-06 56.2 94 38.3
Nitab4.5_0003178g0010 Nicotiana tabacum HOM05D004425 ORTHO05D005783 3.2e-06 56.2 49 57.1
Peaxi162Scf00360g00089 Petunia axillaris HOM05D004425 ORTHO05D005783 3.2e-06 56.2 49 57.1
Prupe.8G042900 Prunus persica HOM05D004425 ORTHO05D005783 3.2e-06 56.2 84 41.7
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 3.2e-06 56.2 49 55.1
Solyc04g072036.1 Solanum lycopersicum HOM05D004425 ORTHO05D005783 3.2e-06 56.2 49 57.1
Sopen04g028080 Solanum pennellii HOM05D004425 ORTHO05D005783 3.2e-06 56.2 49 57.1
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 3.2e-06 56.2 94 40.4
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 3.2e-06 56.2 39 66.7
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 4.2e-06 55.8 39 66.7
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 4.2e-06 55.8 39 66.7
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 4.2e-06 55.8 94 38.3
Nitab4.5_0003443g0070 Nicotiana tabacum HOM05D004425 ORTHO05D005783 4.2e-06 55.8 57 47.4
Phvul.004G089600 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 4.2e-06 55.8 36 69.4
PGSC0003DMG400025077 Solanum tuberosum HOM05D004425 ORTHO05D005783 4.2e-06 55.8 49 55.1
TPR.G17013 Trifolium pratense HOM05D004425 ORTHO05D005783 4.2e-06 55.8 49 55.1
VMungo0720G3015 Vigna mungo HOM05D004425 ORTHO05D005783 4.2e-06 55.8 100 39.0
Ah.05g169010 Amaranthus hybridus HOM05D004425 ORTHO05D005783 5.5e-06 55.5 39 64.1
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 5.5e-06 55.5 49 55.1
HanXRQChr11g0320171 Helianthus annuus HOM05D004425 ORTHO05D005783 5.5e-06 55.5 60 48.3
Os01g0589000 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 5.5e-06 55.5 49 51.0
SGA_v2.0_scaffold133G34677 Striga asiatica HOM05D004425 ORTHO05D005783 5.5e-06 55.5 50 54.0
EL10Ac1g01372 Beta vulgaris HOM05D004425 ORTHO05D005783 7.1e-06 55.1 39 64.1
BcaC05g28762 Brassica carinata HOM05D004425 ORTHO05D005783 7.1e-06 55.1 31 83.9
Migut.C00150 Erythranthe guttata HOM05D004425 ORTHO05D005783 7.1e-06 55.1 49 55.1
Os05g0535800 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 7.1e-06 55.1 45 51.1
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 7.1e-06 55.1 94 37.2
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 9.3e-06 54.7 39 64.1
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 9.3e-06 54.7 94 37.2
Gohir.A02G062300 Gossypium hirsutum HOM05D004425 ORTHO05D005783 9.3e-06 54.7 49 55.1
Gohir.D02G068000 Gossypium hirsutum HOM05D004425 ORTHO05D005783 9.3e-06 54.7 49 55.1
Gorai.005G076800 Gossypium raimondii HOM05D004425 ORTHO05D005783 9.3e-06 54.7 49 55.1
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 9.3e-06 54.7 39 64.1


User provided reference genes

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