Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p26540 Brassica napus HOM05D012065 ORTHO05D014121 2.1e-91 339.0 166 100.0
C06p03490 Brassica napus HOM05D012065 ORTHO05D014121 3.5e-86 321.6 166 95.2
BcaC08g43090 Brassica carinata HOM05D012065 ORTHO05D014121 1.9e-84 315.8 166 93.4
C01p43090 Brassica napus HOM05D012065 ORTHO05D014121 1.8e-74 282.7 170 85.3
C03p44440 Brassica napus HOM05D012065 ORTHO05D014121 8.3e-64 247.3 144 84.0
C05p23270 Brassica napus HOM05D012065 ORTHO05D014121 5.1e-61 238.0 168 75.6
A04p27420 Brassica napus HOM05D012065 ORTHO05D014121 2.1e-46 189.5 134 73.9
BcaC04g22844 Brassica carinata HOM05D012065 ORTHO05D014121 2.5e-44 182.6 92 92.4
BcaB06g25897 Brassica carinata HOM05D001053 ORTHO05D007087 7.3e-44 181.0 224 50.9
BolC5t33437H Brassica oleracea HOM05D001053 ORTHO05D007087 1.3e-43 180.3 224 51.3
BcaC05g28608 Brassica carinata HOM05D001053 ORTHO05D007087 6.2e-43 177.9 224 50.9
C05p47110 Brassica napus HOM05D001053 ORTHO05D007087 6.2e-43 177.9 224 50.9
A05p31110 Brassica napus HOM05D001053 ORTHO05D007087 2.2e-40 169.5 225 49.3
BraA05t21952Z Brassica rapa HOM05D001053 ORTHO05D007087 2.2e-40 169.5 225 49.3
BolC3t18699H Brassica oleracea HOM05D012065 ORTHO05D014121 1.4e-39 166.8 82 93.9
Thhalv10020421m.g Eutrema salsugineum HOM05D001053 ORTHO05D007087 1.2e-38 163.7 224 49.6
Sp3g16610 Schrenkiella parvula HOM05D001053 ORTHO05D007087 1.6e-38 163.3 224 50.0
AL3G31840 Arabidopsis lyrata HOM05D001053 ORTHO05D007087 3.3e-36 155.6 224 46.9
AT3G18520 Arabidopsis thaliana HOM05D001053 ORTHO05D007087 2.1e-35 152.9 224 45.5
A08p08020 Brassica napus HOM05D012065 ORTHO05D014121 1.2e-33 147.1 85 83.5
Carub.0003s1831 Capsella rubella HOM05D001053 ORTHO05D007087 2.2e-32 142.9 224 45.5
CARHR093900 Cardamine hirsuta HOM05D001053 ORTHO05D007087 2.2e-32 142.9 224 46.4
Aa31LG8G5390 Aethionema arabicum HOM05D001053 ORTHO05D007087 3.5e-30 135.6 227 44.9
BcaC08g46389 Brassica carinata HOM05D012065 ORTHO05D014121 3.3e-28 129.0 108 64.8
THA.LOC104820404 Tarenaya hassleriana HOM05D001053 ORTHO05D007087 1.3e-27 127.1 230 43.0
BcaC01g03696 Brassica carinata HOM05D001053 ORTHO05D007087 3.2e-23 112.5 224 39.7
C03p49480 Brassica napus HOM05D001053 ORTHO05D007087 3.2e-23 112.5 224 39.7
BolC3t17246H Brassica oleracea HOM05D001053 ORTHO05D007087 3.2e-23 112.5 224 39.7
BraSC35t46020Z Brassica rapa HOM05D012065 ORTHO05D014121 1.1e-20 104.0 71 70.4
Sabra12G0043500 Salix brachista HOM05D001053 ORTHO05D007087 3.7e-19 99.0 222 35.6
Gohir.A12G265600 Gossypium hirsutum HOM05D001053 ORTHO05D007087 6.9e-18 94.7 222 32.9
A07p02720 Brassica napus HOM05D012065 ORTHO05D014121 2.0e-17 93.2 94 58.5
Gorai.008G285500 Gossypium raimondii HOM05D001053 ORTHO05D007087 2.6e-17 92.8 222 32.4
Gohir.D12G265800 Gossypium hirsutum HOM05D001053 ORTHO05D007087 4.5e-17 92.0 222 32.4
PGR083G1355 Punica granatum HOM05D001053 ORTHO05D007087 4.5e-17 92.0 223 34.5
CiPaw.15G127300 Carya illinoinensis HOM05D001053 ORTHO05D007087 2.9e-16 89.4 223 32.7
Potri.012G060400 Populus trichocarpa HOM05D001053 ORTHO05D007087 2.9e-16 89.4 222 34.7
QL10p022503 Quercus lobata HOM05D001053 ORTHO05D007087 5.0e-16 88.6 224 33.5
Manes.01G020400 Manihot esculenta HOM05D001053 ORTHO05D007087 6.5e-16 88.2 220 32.7
Cpa.g.sc13.45 Carica papaya HOM05D001053 ORTHO05D007087 4.2e-15 85.5 232 34.9
TWI81G0178 Tripterygium wilfordii HOM05D001053 ORTHO05D007087 1.2e-14 84.0 223 32.7
BraSC35t46021Z Brassica rapa HOM05D012065 ORTHO05D014121 1.6e-14 83.6 55 78.2
Eucgr.B00702 Eucalyptus grandis HOM05D001053 ORTHO05D007087 2.1e-14 83.2 219 30.1
Lalb_Chr13g0302311 Lupinus albus HOM05D001053 ORTHO05D007087 2.1e-14 83.2 219 32.9
Psat4g043200 Pisum sativum HOM05D001053 ORTHO05D007087 2.1e-14 83.2 223 33.2
RcHm_v2.0_Chr7g0184671 Rosa chinensis HOM05D001053 ORTHO05D007087 2.1e-14 83.2 219 33.8
Medtr4g111985 Medicago truncatula HOM05D001053 ORTHO05D007087 3.6e-14 82.4 222 31.1
TPR.G26787 Trifolium pratense HOM05D001053 ORTHO05D007087 3.6e-14 82.4 234 33.3
Thecc.03G028900 Theobroma cacao HOM05D001053 ORTHO05D007087 6.1e-14 81.6 224 30.8
FvH4_5g12660 Fragaria vesca HOM05D001053 ORTHO05D007087 7.9e-14 81.3 218 33.5
FAN04G2323 Fragaria x ananassa HOM05D001053 ORTHO05D007087 7.9e-14 81.3 218 33.5
FAN13G1473 Fragaria x ananassa HOM05D001053 ORTHO05D007087 7.9e-14 81.3 218 33.5
FAN18G2590 Fragaria x ananassa HOM05D001053 ORTHO05D007087 7.9e-14 81.3 218 33.5
FAN18G3757 Fragaria x ananassa HOM05D001053 ORTHO05D007087 7.9e-14 81.3 218 33.5
vmacro17672 Vaccinium macrocarpon HOM05D001053 ORTHO05D007087 7.9e-14 81.3 230 32.2
Phvul.003G176700 Phaseolus vulgaris HOM05D001053 ORTHO05D007087 1.4e-13 80.5 220 33.2
Atru.chr4.2605 Acer truncatum HOM05D001053 ORTHO05D007087 2.3e-13 79.7 228 31.6
Sopen03g038580 Solanum pennellii HOM05D001053 ORTHO05D007087 2.3e-13 79.7 218 30.7
ECA232G0502 Erigeron canadensis HOM05D001053 ORTHO05D007087 3.0e-13 79.3 231 30.7
Atru.chr4.2606 Acer truncatum HOM05D001053 ORTHO05D007087 3.9e-13 79.0 228 31.1
arahy.Tifrunner.gnm1.ann1.YD5ENU Arachis hypogaea HOM05D001053 ORTHO05D007087 3.9e-13 79.0 225 32.4
Solyc03g119730.3 Solanum lycopersicum HOM05D001053 ORTHO05D007087 3.9e-13 79.0 218 30.3
CANSAT80G1114 Cannabis sativa HOM05D001053 ORTHO05D007087 8.8e-13 77.8 217 32.7
Duzib205G1271 Durio zibethinus HOM05D001053 ORTHO05D007087 8.8e-13 77.8 225 30.2
Dinv40429 Davidia involucrata HOM05D001053 ORTHO05D007087 1.1e-12 77.4 200 32.5
Peaxi162Scf00015g00729 Petunia axillaris HOM05D001053 ORTHO05D007087 1.1e-12 77.4 222 29.7
Sed0003489 Sechium edule HOM05D001053 ORTHO05D007087 1.1e-12 77.4 230 33.0
Glyma.17G120900 Glycine max HOM05D001053 ORTHO05D007087 1.5e-12 77.0 225 33.3
PGSC0003DMG400005706 Solanum tuberosum HOM05D001053 ORTHO05D007087 2.0e-12 76.6 218 29.8
Lj5A145G38 Lonicera japonica HOM05D001053 ORTHO05D007087 2.5e-12 76.3 250 27.6
COL.COLO4_22724 Corchorus olitorius HOM05D001053 ORTHO05D007087 3.3e-12 75.9 238 30.7
VMungo1215G0938 Vigna mungo HOM05D001053 ORTHO05D007087 3.3e-12 75.9 221 33.9
A03p40690 Brassica napus HOM05D001053 ORTHO05D007087 5.7e-12 75.1 140 41.4
BraA03t13225Z Brassica rapa HOM05D001053 ORTHO05D007087 9.7e-12 74.3 159 37.7
MELO3C015103.2 Cucumis melo HOM05D001053 ORTHO05D007087 9.7e-12 74.3 220 33.6
Nitab4.5_0000410g0030 Nicotiana tabacum HOM05D001053 ORTHO05D007087 9.7e-12 74.3 222 29.7
EL10Ac5g11255 Beta vulgaris HOM05D001053 ORTHO05D007087 1.3e-11 73.9 222 31.5
MD06G1211800 Malus domestica HOM05D001053 ORTHO05D007087 1.3e-11 73.9 224 30.8
MD14G1222300 Malus domestica HOM05D001053 ORTHO05D007087 1.3e-11 73.9 215 32.6
Nitab4.5_0001599g0120 Nicotiana tabacum HOM05D001053 ORTHO05D007087 1.3e-11 73.9 222 29.7
CAN.G438.119 Capsicum annuum HOM05D001053 ORTHO05D007087 1.7e-11 73.6 218 30.3
CsaV3_1G043530 Cucumis sativus L. HOM05D001053 ORTHO05D007087 1.7e-11 73.6 220 32.7
Actinidia31025 Actinidia chinensis HOM05D001053 ORTHO05D007087 2.2e-11 73.2 223 30.0
GSVIVG01008242001 Vitis vinifera HOM05D001053 ORTHO05D007087 2.2e-11 73.2 200 31.5
Lalb_Chr07g0178611 Lupinus albus HOM05D001053 ORTHO05D007087 2.8e-11 72.8 222 30.2
Glyma.05G012850 Glycine max HOM05D001053 ORTHO05D007087 4.8e-11 72.0 226 32.7
Lsat_1_v5_gn_4_115781 Lactuca sativa HOM05D001053 ORTHO05D007087 1.1e-10 70.9 220 29.5
CSS0027606 Camellia sinensis var. sinensis HOM05D001053 ORTHO05D007087 2.4e-10 69.7 218 28.9
Cfa019809 Carpinus fangiana HOM05D001053 ORTHO05D007087 2.4e-10 69.7 264 28.8
Ca_02540_v3 Cicer arietinum L. HOM05D001053 ORTHO05D007087 2.4e-10 69.7 221 30.8
Sc10g0009540 Simmondsia chinensis HOM05D001053 ORTHO05D007087 2.4e-10 69.7 229 29.3
Cc04_g07470 Coffea canephora HOM05D001053 ORTHO05D007087 4.1e-10 68.9 226 29.2
Lj4g0008764 Lotus japonicus HOM05D001053 ORTHO05D007087 4.1e-10 68.9 230 31.3
TAR622G0805 Trochodendron aralioides HOM05D001053 ORTHO05D007087 4.1e-10 68.9 219 29.7
DCAR_023185 Daucus carota HOM05D001053 ORTHO05D007087 5.3e-10 68.6 204 30.4
FAN08G3403 Fragaria x ananassa HOM05D001053 ORTHO05D007087 1.2e-09 67.4 201 32.3
HanXRQChr09g0269881 Helianthus annuus HOM05D001053 ORTHO05D007087 2.6e-09 66.2 220 29.1
Ciclev10019370m.g Citrus clementina HOM05D001053 ORTHO05D007087 4.5e-09 65.5 230 29.6
Haze_18621 Corylus avellana HOM05D001053 ORTHO05D007087 1.0e-08 64.3 198 31.3
Nn4g23728 Nelumbo nucifera HOM05D001053 ORTHO05D007087 2.9e-08 62.8 217 28.1
arahy.Tifrunner.gnm1.ann1.XDJV4T Arachis hypogaea HOM05D001053 ORTHO05D007087 5.5e-07 58.5 208 31.7
MSTRG.9271 Avicennia marina HOM05D001053 ORTHO05D007087 7.2e-07 58.2 212 29.7
PSO478G0818 Papaver somniferum HOM05D001053 ORTHO05D007087 9.4e-07 57.8 209 27.8
PSO017G2978 Papaver somniferum HOM05D001053 ORTHO05D007087 1.2e-06 57.4 209 27.3
AUR62036959 Chenopodium quinoa HOM05D001053 ORTHO05D007087 3.6e-06 55.8 174 31.6
unitig_46.g18490 Utricularia gibba HOM05D001053 ORTHO05D007087 3.6e-06 55.8 205 27.3
Prupe.5G217800 Prunus persica HOM05D001053 ORTHO05D007087 4.7e-06 55.5 151 33.8


User provided reference genes

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