Gene: PGSC0003DMG400005706

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400005706
  • Transcript Identifier PGSC0003DMT400014582
  • Gene Type Coding gene
  • Location ST4.03ch03 : 59223200-59231932 : positive

Gene Family Information

  • ID HOM05D001053
  • #Genes/#Species 576/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37461051
  • id PGSC0003DMG400005706.v4.03
  • uniprot M1A4H7

Descriptions

  • Description Histone deacetylase hda1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT5G61060
GO:0051289
ISO
PLAZA Integrative Orthologyprotein homotetramerization AT3G18520
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT3G18520
GO:2000306
ISO
PLAZA Integrative Orthologypositive regulation of photomorphogenesis AT3G18520
GO:0009789
ISO
PLAZA Integrative Orthologypositive regulation of abscisic acid-activated signaling pathway AT3G18520
GO:0045604
ISO
PLAZA Integrative Orthologyregulation of epidermal cell differentiation AT5G61070
GO:0070932
IEA
GOA Databasehistone H3 deacetylation
GO:0042548
ISO
PLAZA Integrative Orthologyregulation of photosynthesis, light reaction AT3G18520
GO:0010053
ISO
PLAZA Integrative Orthologyroot epidermal cell differentiation AT5G61070
GO:0009640
IEA
GOA Databasephotomorphogenesis
GO:0009294
IEA
GOA DatabaseDNA mediated transformation
GO:0006325
IEA
GOA Databasechromatin organization
GO:0016575
IEA
GOA Databasehistone deacetylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
ISO
PLAZA Integrative Orthologyzinc ion binding AT3G18520
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G61060
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0032041
IEA
GOA DatabaseNAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0004407
IEA
GOA Databasehistone deacetylase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G61070
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G61070
GO:0000118
ISO
PLAZA Integrative Orthologyhistone deacetylase complex AT5G61060
GO:0005730
IEA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000286 Histone deacetylase family
IPR037138 Histone deacetylase domain superfamily
IPR023801 Histone deacetylase domain
IPR023696 Ureohydrolase domain superfamily
Mapman id Description
12.3.2.1.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase