Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 3.2e-160 568.5 320 100.0
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 3.2e-160 568.5 320 100.0
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-159 566.6 320 99.7
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 5.6e-157 557.8 320 98.8
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 5.6e-157 557.8 320 98.8
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-150 536.6 320 95.9
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 9.8e-146 520.4 319 92.2
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-145 520.0 319 92.2
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 6.4e-145 517.7 319 91.8
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.6e-143 513.1 322 91.9
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 6.0e-143 511.1 319 90.9
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 4.0e-139 498.4 322 88.5
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 2.2e-137 492.7 320 90.0
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 4.3e-133 478.4 298 91.6
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.4e-131 473.4 326 83.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.4e-131 473.4 319 85.9
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 5.2e-131 471.5 320 84.4
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-127 460.3 279 92.5
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.6e-127 459.9 322 82.9
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.6e-127 459.9 320 82.5
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 3.5e-127 458.8 317 83.3
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 6.0e-127 458.0 317 83.0
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.0e-126 457.2 320 82.8
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.7e-126 456.4 317 83.0
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.7e-126 456.4 317 83.0
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-125 453.8 317 83.0
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 1.1e-125 453.8 317 83.0
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 9.6e-125 450.7 314 83.8
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.8e-124 449.1 323 80.8
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 9.0e-123 444.1 313 82.7
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 5.8e-122 441.4 317 82.0
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 4.9e-121 438.3 319 81.8
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 4.2e-120 435.3 320 77.8
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 2.1e-116 422.9 320 75.9
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.4e-114 415.6 323 75.2
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.5e-114 415.2 323 75.5
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.9e-114 414.1 320 75.3
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 2.2e-113 412.9 320 74.7
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.9e-112 409.8 320 75.3
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 2.4e-112 409.5 325 76.0
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 3.2e-112 409.1 323 76.2
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 4.2e-112 408.7 322 74.5
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.2e-111 407.1 327 73.1
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.6e-111 406.8 320 74.7
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.0e-110 404.1 322 73.6
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 2.3e-110 402.9 325 73.8
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 3.0e-110 402.5 324 74.1
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 8.7e-110 401.0 325 73.2
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.1e-109 400.6 327 73.1
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.9e-109 399.8 326 71.8
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.9e-109 399.8 322 72.0
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 3.3e-109 399.1 337 72.7
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 4.3e-109 398.7 321 73.5
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 5.6e-109 398.3 324 74.1
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 7.4e-109 397.9 320 74.4
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 7.4e-109 397.9 324 73.8
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 9.6e-109 397.5 322 73.3
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.3e-108 397.1 321 74.1
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.3e-108 397.1 324 71.6
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.1e-108 396.4 320 71.9
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 3.7e-108 395.6 322 72.7
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 4.8e-108 395.2 321 72.6
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 6.2e-108 394.8 322 73.9
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 6.2e-108 394.8 324 71.6
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 8.1e-108 394.4 323 72.4
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 8.1e-108 394.4 316 74.7
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 1.1e-107 394.0 337 70.9
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.1e-107 394.0 321 72.6
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.4e-107 393.7 323 73.1
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.8e-107 393.3 327 70.9
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.8e-107 393.3 320 74.4
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.8e-107 393.3 320 71.2
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.4e-107 392.9 323 72.1
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 3.1e-107 392.5 320 73.1
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.0e-107 392.1 324 72.5
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 5.3e-107 391.7 326 72.1
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 6.9e-107 391.3 320 72.8
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.0e-107 391.0 320 72.8
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.5e-106 390.2 324 71.6
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 1.5e-106 390.2 321 71.7
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.5e-106 390.2 321 72.9
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.0e-106 389.8 323 72.1
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 2.6e-106 389.4 326 70.6
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.6e-106 389.4 326 71.2
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 5.8e-106 388.3 354 67.8
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.3e-105 387.1 322 71.7
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.3e-105 387.1 332 70.5
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.7e-105 386.7 329 68.7
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.7e-105 386.7 326 71.5
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 6.5e-105 384.8 325 71.4
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 6.5e-105 384.8 326 71.8
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.5e-105 384.8 321 70.7
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 8.4e-105 384.4 324 71.0
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 8.4e-105 384.4 325 70.5
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 8.4e-105 384.4 328 70.1
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 8.4e-105 384.4 325 71.7
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.1e-104 384.0 332 69.0
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.9e-104 383.3 327 71.3
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.2e-104 382.5 320 69.7
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 3.2e-104 382.5 329 70.8
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 3.2e-104 382.5 322 71.1
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 3.2e-104 382.5 332 69.9
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 7.1e-104 381.3 324 70.1
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 9.3e-104 380.9 332 69.0
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 9.3e-104 380.9 327 70.3
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 9.3e-104 380.9 277 76.5
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 3.5e-103 379.0 323 70.0
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 3.5e-103 379.0 324 69.8
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 6.0e-103 378.3 320 70.0
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 6.0e-103 378.3 322 71.1
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 7.9e-103 377.9 313 70.3
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.9e-102 375.6 323 70.6
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 5.1e-102 375.2 327 70.6
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 6.7e-102 374.8 327 70.0
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 6.7e-102 374.8 326 68.7
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.1e-101 374.0 325 71.1
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.9e-101 373.2 272 77.6
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.9e-101 373.2 320 69.7
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 2.5e-101 372.9 378 64.8
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 3.3e-101 372.5 228 94.7
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 4.8e-100 368.6 323 67.8
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 4.8e-100 368.6 303 72.9
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 8.2e-100 367.9 326 71.5
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.1e-99 367.5 315 71.7
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.4e-99 366.3 251 84.1
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.4e-99 366.3 326 69.9
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.6e-98 362.8 323 66.6
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.5e-98 362.1 301 72.4
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 2.2e-97 359.8 296 72.0
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 2.9e-97 359.4 263 77.9
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 2.9e-97 359.4 320 70.3
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.0e-97 358.6 319 62.7
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.9e-96 356.7 297 71.0
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 4.2e-96 355.5 320 68.8
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 5.5e-96 355.1 252 82.1
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-95 353.6 255 70.2
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.8e-94 350.1 303 68.3
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 3.0e-94 349.4 308 68.8
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.6e-92 343.6 300 71.3
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.2e-92 341.3 228 86.0
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 8.2e-92 341.3 315 66.3
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.4e-91 340.5 262 72.5
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.2e-88 328.9 221 86.0
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.2e-88 328.2 319 57.4
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.4e-86 323.9 305 69.5
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 8.8e-86 321.2 337 62.6
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.7e-81 307.0 353 57.5
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.2e-81 306.6 301 59.1
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 3.8e-81 305.8 277 62.5
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 8.5e-81 304.7 319 58.9
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.0e-77 293.5 322 59.6
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.0e-77 293.5 322 59.6
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 7.0e-75 285.0 250 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 5.9e-74 282.0 254 58.7
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.7e-71 273.1 196 82.7
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.2e-69 267.7 257 68.9
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.5e-69 267.3 247 59.5
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.7e-68 263.8 201 77.6
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 4.8e-68 262.3 247 68.8
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 4.2e-64 249.2 236 69.9
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 6.5e-57 225.3 270 45.2
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 8.0e-55 218.4 146 74.7
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 7.5e-53 211.8 290 46.6
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.5e-48 197.6 122 78.7
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.5e-48 196.8 122 78.7
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 1.2e-45 188.0 146 66.4
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.8e-43 180.6 172 69.8
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 4.1e-43 179.5 193 64.2
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.5e-40 170.2 165 68.5
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.7e-36 157.5 141 62.4
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.5e-32 144.4 98 77.6
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.3e-32 143.3 173 62.4
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 3.3e-32 143.3 93 74.2
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 8.1e-31 138.7 80 83.8
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.5e-29 134.4 252 36.9
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 5.8e-29 132.5 108 72.2
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.9e-24 117.5 76 75.0
BolC4t25212H Brassica oleracea HOM05D003763 ORTHO05D004315 8.1e-23 112.1 75 78.7
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.1e-17 92.8 107 66.4
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.3e-16 89.7 83 80.7
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 9.0e-14 82.0 122 45.1
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 1.3e-07 61.6 90 42.2
C07p59320 Brassica napus HOM05D003763 ORTHO05D102539 6.9e-06 55.8 173 32.4
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 9.0e-06 55.5 98 28.6


User provided reference genes

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