Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 0.0e+00 2966.4 1506 100.0
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 0.0e+00 2599.3 1450 92.6
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 0.0e+00 1675.6 873 97.5
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 0.0e+00 1519.6 906 87.0
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 0.0e+00 1398.6 884 82.2
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 0.0e+00 1307.0 914 75.7
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 0.0e+00 1280.8 660 98.6
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 0.0e+00 1268.1 868 76.5
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 0.0e+00 1267.3 893 75.0
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 0.0e+00 1250.3 897 74.6
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 0.0e+00 1236.1 886 74.2
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 0.0e+00 1190.6 662 92.0
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 4.0e-306 1055.4 879 64.1
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 5.6e-284 981.9 1527 42.0
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 5.6e-284 981.9 883 60.2
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 3.9e-277 959.1 870 59.9
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 7.4e-268 928.3 918 57.2
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.1e-267 926.8 1549 40.1
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.8e-266 923.7 919 57.1
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 3.1e-266 922.9 918 56.8
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 4.5e-265 919.1 923 56.7
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.8e-258 897.1 946 54.2
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.1e-242 843.2 689 65.9
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 3.6e-222 776.5 925 47.6
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 8.0e-222 775.4 966 47.6
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 5.2e-221 772.7 914 47.8
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 1.3e-219 768.1 891 49.6
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 8.6e-216 755.4 686 61.2
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 8.0e-214 748.8 889 47.7
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.7e-211 740.0 893 47.7
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.7e-209 733.8 901 46.1
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 4.5e-209 733.0 911 46.8
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 4.5e-209 733.0 894 48.2
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 7.8e-209 732.3 876 47.8
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.1e-207 728.4 899 47.3
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 3.3e-207 726.9 884 47.4
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 2.8e-206 723.8 901 46.4
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 1.2e-204 718.4 944 44.9
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.2e-204 718.4 944 44.5
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 5.8e-204 716.1 894 46.8
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.2e-203 714.1 889 45.6
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 6.4e-203 712.6 865 46.2
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.7e-200 704.5 868 47.2
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 6.6e-200 702.6 908 46.1
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.1e-197 695.3 911 45.7
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 1.4e-197 694.9 877 47.2
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 3.4e-196 690.3 887 46.6
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 1.7e-195 688.0 905 46.2
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.9e-195 687.2 913 44.7
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 7.1e-194 682.6 879 46.0
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 2.7e-193 680.6 905 45.3
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 1.3e-192 678.3 911 44.8
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.7e-192 677.9 892 44.8
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 5.1e-192 676.4 876 45.4
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 5.6e-191 672.9 899 45.1
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 5.6e-191 672.9 879 45.3
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 9.5e-191 672.2 882 46.0
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 1.2e-190 671.8 886 45.1
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.2e-190 671.8 895 44.8
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.2e-190 671.8 875 45.1
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.8e-189 667.9 914 44.0
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 3.1e-189 667.2 876 45.4
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 3.1e-189 667.2 882 45.7
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 5.2e-189 666.4 886 45.6
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 8.9e-189 665.6 913 44.0
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-188 665.2 932 43.3
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 3.4e-188 663.7 870 46.1
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 4.4e-188 663.3 956 43.6
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 7.6e-188 662.5 897 44.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.7e-187 661.4 884 44.9
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.7e-187 661.4 926 43.3
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.9e-187 660.6 886 44.8
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 4.9e-187 659.8 925 44.2
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 2.4e-186 657.5 852 45.1
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 2.4e-186 657.5 884 44.9
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 9.2e-186 655.6 924 43.4
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 3.9e-184 650.2 896 44.3
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 3.9e-184 650.2 881 44.6
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 9.6e-183 645.6 908 44.4
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 6.2e-182 642.9 864 44.4
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 4.0e-181 640.2 899 43.3
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 6.8e-181 639.4 893 43.6
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.5e-180 638.3 935 43.6
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 9.9e-180 635.6 891 44.3
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 2.2e-179 634.4 876 44.4
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 6.4e-179 632.9 892 43.4
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 8.4e-179 632.5 933 42.9
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 3.0e-176 624.0 880 41.9
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.1e-176 623.2 972 41.2
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 2.5e-175 620.9 916 42.9
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.5e-175 620.9 533 62.9
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 2.8e-174 617.5 833 44.8
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.6e-174 617.1 904 42.8
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 1.2e-169 602.1 883 42.2
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 8.7e-168 595.9 868 43.0
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 1.1e-162 578.9 869 41.9
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 7.1e-162 576.2 772 44.3
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 2.5e-159 567.8 756 44.7
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.7e-155 555.1 818 41.9
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 3.1e-149 534.3 332 84.6
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-148 531.6 326 82.2
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.0e-148 531.6 725 43.6
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 3.5e-145 520.8 878 40.8
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 1.4e-136 492.3 878 37.7
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 2.0e-132 478.4 721 42.2
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 4.7e-129 467.2 657 41.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.8e-126 457.2 588 47.1
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.3e-126 456.8 646 44.1
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 3.1e-125 454.5 699 39.5
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.0e-120 438.0 800 38.6
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 9.7e-119 433.0 998 33.5
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-118 432.6 748 37.6
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 3.7e-118 431.0 826 35.4
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.6e-116 425.6 665 38.3
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 2.9e-115 421.4 874 36.0
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 5.4e-109 400.6 898 32.6
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 7.5e-103 380.2 669 36.5
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.1e-101 374.4 708 36.3
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.5e-100 370.9 664 35.7
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 1.9e-90 339.0 666 35.0
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 2.5e-90 338.6 666 34.8
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.4e-88 332.8 539 39.3
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 2.7e-84 318.5 182 88.5
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.3e-83 315.5 503 41.0
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 5.0e-83 314.3 337 52.8
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.2e-81 309.7 256 63.3
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.1e-80 305.1 459 39.0
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.6e-79 302.0 256 61.7
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 7.5e-79 300.4 429 45.9
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.1e-77 294.7 602 34.2
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 3.5e-76 291.6 209 71.8
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 4.6e-76 291.2 143 100.0
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 6.6e-75 287.3 593 35.6
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 2.3e-72 278.9 351 45.6
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.4e-62 243.8 225 59.6
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 4.6e-52 211.5 832 26.0
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 5.8e-47 194.5 266 41.7
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.5e-45 188.0 205 47.8
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 5.6e-42 177.9 136 66.2
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 2.8e-41 175.6 193 51.8
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.5e-39 169.9 270 39.3
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 6.5e-38 164.5 163 56.4
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 5.5e-37 161.4 129 64.3
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 4.6e-36 158.3 152 55.9
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 4.6e-36 158.3 564 28.4
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.2e-28 133.7 139 53.2
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 4.6e-28 131.7 322 31.1
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 1.1e-26 127.1 115 59.1
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 9.0e-24 117.5 223 35.9
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 1.5e-23 116.7 116 56.0
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 1.9e-21 109.8 118 48.3
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 4.2e-21 108.6 92 59.8
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 2.7e-20 105.9 92 65.2
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 4.6e-20 105.1 90 65.6
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 4.6e-20 105.1 150 37.3
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 6.1e-20 104.8 92 64.1
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.0e-19 104.0 91 63.7
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 1.4e-19 103.6 91 63.7
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 1.4e-19 103.6 91 63.7
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 7.4e-18 97.8 116 49.1
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 4.8e-17 95.1 139 34.5
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 8.2e-17 94.4 92 64.1
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 8.2e-17 94.4 92 64.1
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 4.1e-16 92.0 123 48.8
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 3.4e-15 89.0 114 48.2
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.1e-13 84.0 107 43.0
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 1.9e-13 83.2 277 26.4
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.2e-13 82.4 87 49.4
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 4.2e-13 82.0 77 53.2
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 2.3e-11 76.3 78 52.6
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 9.7e-10 70.9 69 52.2
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 1.6e-07 63.5 51 54.9


User provided reference genes

Program Settings