Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p11250 Brassica napus HOM05D000894 ORTHO05D002325 3.4e-40 167.9 88 100.0
BolC1t01090H Brassica oleracea HOM05D000894 ORTHO05D002325 7.6e-40 166.8 88 98.9
BcaC04g22008 Brassica carinata HOM05D000894 ORTHO05D002325 9.0e-33 143.3 76 96.1
A09p19540 Brassica napus HOM05D000894 ORTHO05D002325 9.0e-33 143.3 76 96.1
C09p24910 Brassica napus HOM05D000894 ORTHO05D002325 9.0e-33 143.3 76 96.1
BolC9t55382H Brassica oleracea HOM05D000894 ORTHO05D002325 9.0e-33 143.3 76 96.1
BraA09t37568Z Brassica rapa HOM05D000894 ORTHO05D002325 9.0e-33 143.3 76 96.1
AT5G42220 Arabidopsis thaliana HOM05D000894 ORTHO05D002325 2.3e-28 128.6 72 91.7
Carub.0008s0704 Capsella rubella HOM05D000894 ORTHO05D002325 5.1e-28 127.5 72 90.3
Thhalv10003631m.g Eutrema salsugineum HOM05D000894 ORTHO05D002325 1.5e-27 125.9 72 88.9
CARHR184490 Cardamine hirsuta HOM05D000894 ORTHO05D002325 4.3e-27 124.4 72 87.5
AL8G19490 Arabidopsis lyrata HOM05D000894 ORTHO05D002325 8.2e-26 120.2 72 84.7
Sp7g08390 Schrenkiella parvula HOM05D000894 ORTHO05D002325 8.2e-26 120.2 72 87.5
BcaB07g31087 Brassica carinata HOM05D000894 ORTHO05D002325 1.1e-25 119.8 76 82.9
BcaNung05258 Brassica carinata HOM05D000894 ORTHO05D002325 9.0e-25 116.7 76 81.6
Aa31LG9G12370 Aethionema arabicum HOM05D000894 ORTHO05D002325 1.2e-24 116.3 75 80.0
BolC2t10311H Brassica oleracea HOM05D000894 ORTHO05D002325 2.5e-22 108.6 65 86.2
A02p27020 Brassica napus HOM05D000894 ORTHO05D002325 1.0e-20 103.2 62 85.5
BraA02t07717Z Brassica rapa HOM05D000894 ORTHO05D002325 1.0e-20 103.2 62 85.5
BcaC03g16458 Brassica carinata HOM05D000894 ORTHO05D002325 2.3e-20 102.1 65 81.5
C02p42750 Brassica napus HOM05D000894 ORTHO05D002325 2.3e-20 102.1 65 81.5
TWI56G0050 Tripterygium wilfordii HOM05D000894 ORTHO05D002325 1.9e-19 99.0 72 70.8
Migut.N03195 Erythranthe guttata HOM05D000894 ORTHO05D002325 2.5e-19 98.6 76 65.8
Cpa.g.sc26.232 Carica papaya HOM05D000894 ORTHO05D002325 3.3e-19 98.2 76 67.1
Potri.002G013500 Populus trichocarpa HOM05D000894 ORTHO05D002325 7.4e-19 97.1 76 68.4
SGA_v2.0_scaffold19G08600 Striga asiatica HOM05D000894 ORTHO05D002325 2.8e-18 95.1 76 63.2
CsaV3_4G037100 Cucumis sativus L. HOM05D000894 ORTHO05D002325 6.3e-18 94.0 81 59.3
Phvul.001G001400 Phaseolus vulgaris HOM05D000894 ORTHO05D002325 6.3e-18 94.0 72 65.3
Duzib041G0349 Durio zibethinus HOM05D000894 ORTHO05D002325 8.2e-18 93.6 72 68.1
Lalb_Chr03g0033601 Lupinus albus HOM05D000894 ORTHO05D002325 8.2e-18 93.6 72 65.3
Potri.005G247900 Populus trichocarpa HOM05D000894 ORTHO05D002325 8.2e-18 93.6 72 66.7
Sabra02G0010500 Salix brachista HOM05D000894 ORTHO05D002325 1.4e-17 92.8 76 64.5
Psat6g000200 Pisum sativum HOM05D000894 ORTHO05D002325 2.4e-17 92.0 72 66.7
Dinv39574 Davidia involucrata HOM05D000894 ORTHO05D002325 3.1e-17 91.7 78 61.5
Glyma.17G261600 Glycine max HOM05D000894 ORTHO05D002325 3.1e-17 91.7 72 65.3
THA.LOC104809699 Tarenaya hassleriana HOM05D000894 ORTHO05D002325 3.1e-17 91.7 60 76.7
arahy.Tifrunner.gnm1.ann1.LYL18I Arachis hypogaea HOM05D000894 ORTHO05D002325 4.1e-17 91.3 72 65.3
arahy.Tifrunner.gnm1.ann1.U1RN9D Arachis hypogaea HOM05D000894 ORTHO05D002325 4.1e-17 91.3 72 65.3
arahy.Tifrunner.gnm1.ann1.W1R3NJ Arachis hypogaea HOM05D000894 ORTHO05D002325 4.1e-17 91.3 72 65.3
COL.COLO4_21614 Corchorus olitorius HOM05D000894 ORTHO05D002325 4.1e-17 91.3 72 63.9
MELO3C017008.2 Cucumis melo HOM05D000894 ORTHO05D002325 4.1e-17 91.3 72 63.9
Hma1.2p1_1260F.1_g271030 Hydrangea macrophylla HOM05D000894 ORTHO05D002325 6.9e-17 90.5 76 61.8
Sabra05G0191600 Salix brachista HOM05D000894 ORTHO05D002325 6.9e-17 90.5 72 63.9
Glyma.14G223100 Glycine max HOM05D000894 ORTHO05D002325 9.0e-17 90.1 72 63.9
Lalb_Chr19g0131691 Lupinus albus HOM05D000894 ORTHO05D002325 9.0e-17 90.1 72 62.5
Thecc.08G055200 Theobroma cacao HOM05D000894 ORTHO05D002325 9.0e-17 90.1 72 63.9
Atru.chr13.174 Acer truncatum HOM05D000894 ORTHO05D002325 1.2e-16 89.7 72 63.9
Duzib093G2095 Durio zibethinus HOM05D000894 ORTHO05D002325 1.2e-16 89.7 72 63.9
Oeu025003.4 Olea europaea HOM05D000894 ORTHO05D002325 1.2e-16 89.7 76 61.8
ClCG05G015220 Citrullus lanatus HOM05D000894 ORTHO05D002325 1.5e-16 89.4 72 62.5
Gorai.009G189700 Gossypium raimondii HOM05D000894 ORTHO05D002325 1.5e-16 89.4 72 62.5
Gohir.D05G184200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 2.0e-16 89.0 72 62.5
Gohir.D05G256500 Gossypium hirsutum HOM05D000894 ORTHO05D002325 2.6e-16 88.6 72 62.5
Gorai.009G268000 Gossypium raimondii HOM05D000894 ORTHO05D002325 2.6e-16 88.6 72 62.5
TPR.G26410 Trifolium pratense HOM05D000894 ORTHO05D002325 2.6e-16 88.6 72 62.5
Gohir.A05G254900 Gossypium hirsutum HOM05D000894 ORTHO05D002325 3.4e-16 88.2 72 61.1
Lalb_Chr01g0008391 Lupinus albus HOM05D000894 ORTHO05D002325 3.4e-16 88.2 72 62.5
CSS0044890 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 4.5e-16 87.8 72 61.1
CANSAT25G1636 Cannabis sativa HOM05D000894 ORTHO05D002325 4.5e-16 87.8 72 62.5
DCAR_013900 Daucus carota HOM05D000894 ORTHO05D002325 4.5e-16 87.8 76 60.5
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 4.5e-16 87.8 76 63.2
MD08G1004700 Malus domestica HOM05D000894 ORTHO05D002325 4.5e-16 87.8 76 60.5
MSTRG.1129 Avicennia marina HOM05D000894 ORTHO05D002325 5.9e-16 87.4 76 60.5
CSS0030543 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 5.9e-16 87.4 72 61.1
AUR62013832 Chenopodium quinoa HOM05D000894 ORTHO05D002325 5.9e-16 87.4 71 62.0
AUR62036772 Chenopodium quinoa HOM05D000894 ORTHO05D002325 5.9e-16 87.4 71 62.0
MD15G1004200 Malus domestica HOM05D000894 ORTHO05D002325 5.9e-16 87.4 81 59.3
QL02p013593 Quercus lobata HOM05D000894 ORTHO05D002325 5.9e-16 87.4 72 58.3
Actinidia15476 Actinidia chinensis HOM05D000894 ORTHO05D002325 1.0e-15 86.7 72 56.9
Medtr1g026290 Medicago truncatula HOM05D000894 ORTHO05D002325 1.0e-15 86.7 72 62.5
TAR381G0735 Trochodendron aralioides HOM05D000894 ORTHO05D002325 1.0e-15 86.7 72 59.7
Nn5g30896 Nelumbo nucifera HOM05D000894 ORTHO05D002325 1.7e-15 85.9 72 61.1
Oeu046333.2 Olea europaea HOM05D000894 ORTHO05D002325 1.7e-15 85.9 72 59.7
Aqoxy3G00355 Aquilegia oxysepala HOM05D000894 ORTHO05D002325 2.2e-15 85.5 76 57.9
FvH4_2g37770 Fragaria vesca HOM05D000894 ORTHO05D002325 2.2e-15 85.5 81 56.8
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.2e-15 85.5 81 56.8
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.2e-15 85.5 81 56.8
Cc10_g00880 Coffea canephora HOM05D000894 ORTHO05D002325 2.9e-15 85.1 76 56.6
Prupe.1G356800 Prunus persica HOM05D000894 ORTHO05D002325 2.9e-15 85.1 81 55.6
PGR083G1464 Punica granatum HOM05D000894 ORTHO05D002325 2.9e-15 85.1 77 59.7
RcHm_v2.0_Chr6g0303971 Rosa chinensis HOM05D000894 ORTHO05D002325 2.9e-15 85.1 81 55.6
TAR625G0558 Trochodendron aralioides HOM05D000894 ORTHO05D002325 3.8e-15 84.7 72 59.7
Gohir.A05G181200 Gossypium hirsutum HOM05D000894 ORTHO05D002325 5.0e-15 84.3 72 59.7
Solyc04g082160.4 Solanum lycopersicum HOM05D000894 ORTHO05D002325 5.0e-15 84.3 76 57.9
Sopen04g035790 Solanum pennellii HOM05D000894 ORTHO05D002325 5.0e-15 84.3 76 57.9
Cfa014035 Carpinus fangiana HOM05D000894 ORTHO05D002325 6.5e-15 84.0 72 59.7
EL10Ac1g02026 Beta vulgaris HOM05D000894 ORTHO05D002325 8.5e-15 83.6 71 60.6
Lj5g0012630 Lotus japonicus HOM05D000894 ORTHO05D002325 8.5e-15 83.6 76 59.2
Rhsim06G0009500 Rhododendron simsii HOM05D000894 ORTHO05D002325 8.5e-15 83.6 72 56.9
Ah.11g040680 Amaranthus hybridus HOM05D000894 ORTHO05D002325 1.1e-14 83.2 71 59.2
Peaxi162Scf00174g00159 Petunia axillaris HOM05D000894 ORTHO05D002325 1.1e-14 83.2 76 57.9
Haze_22740 Corylus avellana HOM05D000894 ORTHO05D002325 1.4e-14 82.8 72 58.3
Ca_13492_v3 Cicer arietinum L. HOM05D000894 ORTHO05D002325 2.5e-14 82.0 72 59.7
Lsat_1_v5_gn_3_7681 Lactuca sativa HOM05D000894 ORTHO05D002325 2.5e-14 82.0 77 58.4
Sc02g0008970 Simmondsia chinensis HOM05D000894 ORTHO05D002325 2.5e-14 82.0 82 50.0
CiPaw.07G141400 Carya illinoinensis HOM05D000894 ORTHO05D002325 4.2e-14 81.3 72 56.9
CSS0020420 Camellia sinensis var. sinensis HOM05D000894 ORTHO05D002325 9.4e-14 80.1 72 56.9
Sed0000145 Sechium edule HOM05D000894 ORTHO05D002325 9.4e-14 80.1 78 55.1
PGSC0003DMG400009894 Solanum tuberosum HOM05D000894 ORTHO05D002325 9.4e-14 80.1 76 55.3
vmacro21837 Vaccinium macrocarpon HOM05D000894 ORTHO05D002325 9.4e-14 80.1 72 54.2
Nitab4.5_0000588g0330 Nicotiana tabacum HOM05D000894 ORTHO05D002325 2.7e-13 78.6 76 53.9
unitig_32.g11246 Utricularia gibba HOM05D000894 ORTHO05D002325 2.7e-13 78.6 79 53.2
Ciclev10000172m.g Citrus clementina HOM05D000894 ORTHO05D002325 3.6e-13 78.2 72 54.2
CANSAT25G2538 Cannabis sativa HOM05D000894 ORTHO05D002325 6.1e-13 77.4 75 57.3
HanXRQChr17g0533381 Helianthus annuus HOM05D000894 ORTHO05D002325 6.1e-13 77.4 72 55.6
Eucgr.F01713 Eucalyptus grandis HOM05D000894 ORTHO05D002325 7.9e-13 77.0 71 57.7
Sed0000541 Sechium edule HOM05D000894 ORTHO05D002325 1.0e-12 76.6 72 58.3
Lj4C803T7 Lonicera japonica HOM05D000894 ORTHO05D002325 1.8e-12 75.9 59 61.0
HanXRQChr06g0165771 Helianthus annuus HOM05D000894 ORTHO05D002325 3.0e-12 75.1 62 62.9
Manes.05G140700 Manihot esculenta HOM05D000894 ORTHO05D002325 2.0e-11 72.4 57 64.9
ECA246G4835 Erigeron canadensis HOM05D000894 ORTHO05D002325 5.7e-11 70.9 66 56.1
GSVIVG01029432001 Vitis vinifera HOM05D000894 ORTHO05D002325 5.7e-11 70.9 57 61.4
HanXRQChr02g0048881 Helianthus annuus HOM05D000894 ORTHO05D002325 2.8e-10 68.6 82 45.1
ECA233G1071 Erigeron canadensis HOM05D000894 ORTHO05D002325 1.2e-08 63.2 77 45.5
CDE02G0614 Ceratophyllum demersum HOM05D000894 ORTHO05D002325 4.5e-08 61.2 61 49.2
HanXRQChr07g0187031 Helianthus annuus HOM05D000894 ORTHO05D002325 2.9e-07 58.5 77 41.6
CAN.G311.95 Capsicum annuum HOM05D000894 ORTHO05D002325 1.4e-06 56.2 76 43.4
SGA_v2.0_scaffold25G11192 Striga asiatica HOM05D000894 ORTHO05D002325 4.2e-06 54.7 59 45.8


User provided reference genes

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