Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 6.7e-63 243.8 120 100.0
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 6.7e-63 243.8 120 100.0
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 6.7e-63 243.8 120 100.0
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 6.7e-63 243.8 120 100.0
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 6.7e-63 243.8 120 100.0
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 2.5e-62 241.9 120 99.2
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 2.5e-62 241.9 120 99.2
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 2.5e-62 241.9 120 99.2
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 2.5e-62 241.9 120 99.2
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 2.5e-62 241.9 120 99.2
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 2.5e-62 241.9 120 99.2
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 5.6e-62 240.7 120 98.3
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 7.4e-62 240.4 120 98.3
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 9.6e-62 240.0 120 98.3
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 2.1e-61 238.8 120 97.5
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.1e-60 236.5 117 98.3
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.1e-60 236.5 119 97.5
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 1.5e-59 232.6 120 95.0
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 1.7e-58 229.2 119 94.1
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 7.9e-56 220.3 120 90.0
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.3e-55 219.5 120 90.0
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 2.3e-55 218.8 120 90.0
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 2.3e-55 218.8 120 90.0
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 89.2
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 8.7e-55 216.9 120 89.2
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 8.7e-55 216.9 120 89.2
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 1.1e-54 216.5 117 89.7
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.1e-54 216.5 120 88.3
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 4.3e-54 214.5 120 88.3
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 4.3e-54 214.5 120 87.5
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 85.8
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 89.2
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 1.3e-53 213.0 120 85.8
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 1.6e-53 212.6 120 86.7
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.6e-53 212.6 120 85.8
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.6e-53 212.6 120 85.8
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 2.2e-53 212.2 120 86.7
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 2.8e-53 211.8 120 87.5
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 2.8e-53 211.8 118 86.4
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.7e-53 211.5 117 86.3
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 4.8e-53 211.1 120 86.7
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 6.3e-53 210.7 119 85.7
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 6.3e-53 210.7 120 88.3
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 1.1e-52 209.9 120 86.7
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.4e-52 209.5 120 85.0
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.4e-52 208.8 120 86.7
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 1.5e-51 206.1 120 85.0
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 2.6e-51 205.3 120 83.3
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 7.7e-51 203.8 120 82.5
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 1.0e-50 203.4 117 83.8
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.3e-50 203.0 120 81.7
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.3e-50 203.0 120 83.3
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.2e-50 202.2 117 83.8
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.2e-50 202.2 117 83.8
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.2e-50 202.2 117 83.8
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 3.8e-50 201.4 120 82.5
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.5e-49 198.7 117 82.9
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 9.4e-49 196.8 120 80.8
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-48 196.4 120 80.8
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.2e-48 196.4 117 82.1
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 7.9e-48 193.7 113 83.2
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 1.5e-46 189.5 120 80.0
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.1e-44 181.8 117 77.8
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 5.3e-44 181.0 120 74.2
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 2.9e-42 175.3 97 89.7
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.5e-42 174.1 98 87.8
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.9e-41 172.6 98 86.7
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 2.5e-41 172.2 119 70.6
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 3.2e-41 171.8 115 73.0
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.2e-41 171.4 112 74.1
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 4.2e-41 171.4 114 73.7
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 5.5e-41 171.0 94 89.4
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 5.5e-41 171.0 98 84.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 7.2e-41 170.6 97 86.6
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 7.2e-41 170.6 97 86.6
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 7.2e-41 170.6 119 69.7
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.2e-40 169.9 98 83.7
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.2e-40 169.9 96 86.5
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.6e-40 169.5 94 88.3
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 4.7e-40 167.9 94 86.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 6.1e-40 167.5 94 85.1
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 1.0e-39 166.8 94 88.3
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.0e-39 166.8 95 83.2
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.0e-39 166.8 95 83.2
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.0e-39 166.8 113 72.6
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 1.8e-39 166.0 96 86.5
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.3e-39 165.6 95 83.2
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 3.0e-39 165.2 97 82.5
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 5.1e-39 164.5 98 79.6
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.1e-38 163.3 96 81.2
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 5.7e-38 161.0 120 70.8
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 1.3e-37 159.8 99 80.8
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.7e-37 159.5 95 81.1
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.8e-37 158.7 92 83.7
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.7e-37 158.3 120 69.2
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 4.8e-37 157.9 76 98.7
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 8.2e-37 157.1 95 80.0
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 8.2e-37 157.1 90 82.2
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 3.1e-36 155.2 89 82.0
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.1e-36 154.8 93 82.8
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 5.3e-36 154.5 94 80.9
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.5e-35 151.4 87 87.4
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 1.3e-34 149.8 117 67.5
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.8e-34 148.3 93 75.3
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.1e-33 146.7 88 79.5
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 3.2e-33 145.2 81 90.1
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.2e-33 145.2 86 82.6
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.2e-33 145.2 117 65.8
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.7e-32 142.1 89 78.7
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 1.0e-31 140.2 126 57.9
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.7e-31 137.5 92 75.0
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 6.7e-31 137.5 113 69.0
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 1.1e-30 136.7 117 53.0
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 5.7e-30 134.4 78 82.1
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 1.8e-28 129.4 97 66.0
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.8e-28 129.4 124 52.4
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 5.3e-28 127.9 86 77.9
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 7.0e-28 127.5 70 85.7
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 9.1e-28 127.1 98 66.3
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 3.5e-27 125.2 68 85.3
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 1.7e-26 122.9 125 51.2
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 7.2e-25 117.5 121 49.6
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.2e-25 117.5 70 80.0
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.2e-25 117.5 70 80.0
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.2e-25 117.5 70 80.0
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.2e-25 117.5 70 80.0
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.2e-25 117.5 70 80.0
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.1e-24 115.9 66 83.3
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.1e-24 115.9 69 79.7
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.1e-24 115.9 69 79.7
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.1e-24 115.9 69 79.7
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.1e-24 115.9 69 79.7
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.1e-24 115.9 69 79.7
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.7e-24 115.5 118 55.9
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 3.0e-23 112.1 64 90.6
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 6.7e-23 110.9 96 61.5
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 7.5e-22 107.5 64 85.9
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 6.3e-21 104.4 62 83.9
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.1e-20 103.6 62 82.3
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 1.1e-20 103.6 61 85.2
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 2.4e-20 102.4 72 70.8
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.2e-19 100.1 70 67.1
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 2.7e-19 99.0 61 82.0
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 2.9e-18 95.5 51 82.4
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.0e-18 94.7 67 73.1
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.0e-18 94.7 67 73.1
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 8.5e-18 94.0 111 44.1
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 2.5e-17 92.4 47 89.4
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 2.5e-17 92.4 47 87.2
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 5.5e-17 91.3 55 81.8
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.6e-16 88.6 92 52.2
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.6e-16 88.6 110 47.3
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 6.1e-16 87.8 75 58.7
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 1.4e-15 86.7 88 58.0
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 1.5e-14 83.2 60 66.7
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 2.0e-14 82.8 90 51.1
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 5.7e-14 81.3 52 73.1
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.7e-14 81.3 41 90.2
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 1.7e-13 79.7 49 81.6
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 3.7e-13 78.6 57 71.9
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 4.5e-11 71.6 49 73.5
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.7e-10 69.7 49 69.4
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 6.6e-10 67.8 37 81.1
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 6.6e-10 67.8 47 74.5
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.5e-09 66.6 41 78.0
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 4.2e-09 65.1 33 87.9
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.6e-08 63.2 36 86.1
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 2.1e-08 62.8 33 90.9
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.4e-07 60.1 37 73.0
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 4.0e-07 58.5 36 83.3
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 1.5e-06 56.6 36 69.4
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 2.0e-06 56.2 31 77.4
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 9.8e-06 53.9 40 67.5


User provided reference genes

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