Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 3.3e-101 371.7 185 100.0
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 3.3e-101 371.7 185 100.0
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 3.3e-101 371.7 185 100.0
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 1.2e-100 369.8 185 99.5
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 1.2e-100 369.8 185 99.5
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 1.2e-100 369.8 185 99.5
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 1.2e-100 369.8 185 99.5
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 1.2e-100 369.8 185 99.5
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 2.8e-100 368.6 185 98.9
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 8.1e-100 367.1 185 98.4
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 4.9e-97 357.8 185 95.1
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 8.3e-97 357.1 184 96.2
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.4e-96 356.3 185 94.6
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 7.1e-96 354.0 182 95.1
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-90 336.3 170 98.8
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.8e-90 334.3 185 88.6
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 9.9e-90 333.6 185 88.6
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 8.4e-89 330.5 182 88.5
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-88 330.1 185 88.1
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-88 330.1 185 88.1
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 3.2e-88 328.6 185 87.0
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 4.1e-88 328.2 185 87.6
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 2.1e-87 325.9 185 86.5
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 2.7e-87 325.5 185 87.0
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 7.8e-87 323.9 185 88.1
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 5.1e-86 321.2 185 85.9
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 8.6e-86 320.5 185 85.9
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 1.9e-85 319.3 185 84.3
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 9.6e-85 317.0 185 84.9
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-84 315.5 185 84.3
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-84 315.5 185 84.3
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-84 315.5 185 84.3
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-84 315.5 185 84.3
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-84 315.5 185 84.3
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-84 315.5 185 84.3
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 3.6e-84 315.1 185 84.3
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 6.2e-84 314.3 185 84.9
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 1.1e-83 313.5 185 85.4
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 4.0e-83 311.6 185 84.9
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 7.8e-79 297.4 171 85.4
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 7.8e-79 297.4 171 85.4
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.4e-75 285.8 182 79.7
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 3.1e-75 285.4 141 99.3
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.6e-74 282.3 182 79.1
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 1.3e-73 280.0 185 77.3
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 2.2e-73 279.3 185 76.2
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.2e-71 273.5 182 76.4
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.2e-71 273.5 182 76.4
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.3e-69 265.4 182 74.7
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.1e-67 260.4 185 71.9
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 2.9e-65 252.3 170 73.5
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.9e-64 249.6 158 79.1
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 2.4e-64 249.2 185 71.4
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.4e-64 249.2 182 70.9
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 7.1e-64 247.7 182 70.3
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 2.1e-63 246.1 185 71.4
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 1.0e-62 243.8 120 100.0
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 1.0e-62 243.8 120 100.0
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.6e-60 236.5 119 97.5
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 9.0e-59 230.7 185 67.0
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.6e-58 229.2 182 65.9
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.0e-57 227.3 133 82.0
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 3.2e-56 222.2 130 83.1
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 1.6e-55 219.9 112 95.5
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 8.7e-54 214.2 170 68.8
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 1.5e-53 213.4 120 85.8
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 1.5e-53 213.4 120 85.8
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 1.5e-53 213.4 120 85.8
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 4.3e-53 211.8 118 86.4
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.4e-53 211.1 117 86.3
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 9.6e-53 210.7 119 85.7
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 2.1e-52 209.5 120 85.0
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.7e-52 208.8 120 86.7
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 8.2e-52 207.6 175 65.1
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 1.1e-51 207.2 186 61.3
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 6.9e-51 204.5 194 55.2
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 2.0e-50 203.0 117 83.8
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 2.0e-50 203.0 120 83.3
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 5.9e-50 201.4 127 79.5
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 5.9e-50 201.4 120 82.5
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 8.5e-49 197.6 132 73.5
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 1.9e-48 196.4 124 80.6
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 1.9e-48 196.4 120 80.8
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.5e-48 194.9 106 87.7
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.2e-47 193.7 113 83.2
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.2e-47 193.7 141 70.2
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 8.7e-46 187.6 178 48.3
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 1.9e-45 186.4 187 59.4
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 3.1e-43 179.1 102 83.3
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 2.6e-42 176.0 184 48.4
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 4.5e-42 175.3 97 89.7
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-41 174.1 98 87.8
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.7e-41 173.3 127 70.1
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.0e-41 171.8 148 64.9
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 5.0e-41 171.8 115 73.0
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 5.0e-41 171.8 119 70.6
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 8.5e-41 171.0 94 89.4
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 8.5e-41 171.0 98 84.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.1e-40 170.6 97 86.6
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.1e-40 170.6 97 86.6
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.9e-40 169.9 98 83.7
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.9e-40 169.9 96 86.5
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 1.9e-40 169.9 190 51.6
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 2.5e-40 169.5 94 88.3
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.2e-40 169.1 186 54.8
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 7.2e-40 167.9 94 86.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 9.4e-40 167.5 94 85.1
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 1.6e-39 166.8 94 88.3
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 1.6e-39 166.8 98 83.7
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.6e-39 166.8 113 72.6
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 1.6e-39 166.8 163 57.7
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 2.1e-39 166.4 189 51.3
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.7e-39 166.0 163 60.1
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.6e-39 165.6 95 83.2
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 4.6e-39 165.2 157 58.6
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 4.6e-39 165.2 157 58.6
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 4.6e-39 165.2 97 82.5
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.8e-38 163.3 96 81.2
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 8.8e-38 161.0 120 70.8
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 2.6e-37 159.5 95 81.1
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.4e-37 157.9 182 49.5
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 9.7e-37 157.5 176 54.5
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 1.3e-36 157.1 112 72.3
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 1.3e-36 157.1 90 82.2
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 4.8e-36 155.2 89 82.0
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 8.2e-36 154.5 94 80.9
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.9e-35 151.4 87 87.4
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 2.6e-34 149.4 117 67.5
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 4.5e-34 148.7 94 74.5
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 1.3e-33 147.1 119 60.5
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.8e-33 145.6 131 58.0
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 5.0e-33 145.2 81 90.1
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.0e-33 145.2 86 82.6
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 2.7e-31 139.4 174 46.0
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-30 137.5 92 75.0
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.9e-30 135.6 91 73.6
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 4.8e-28 128.6 167 47.9
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-27 127.5 70 85.7
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 1.3e-25 120.6 60 98.3
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 8.5e-25 117.9 125 54.4
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 2.5e-24 116.3 60 93.3
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 4.7e-23 112.1 64 90.6
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.0e-22 110.9 96 61.5
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.2e-21 107.5 64 85.9
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 9.7e-21 104.4 62 83.9
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.7e-20 103.6 62 82.3
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 1.7e-20 103.6 61 85.2
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 3.7e-20 102.4 72 70.8
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 6.3e-20 101.7 155 42.6
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.8e-19 100.1 70 67.1
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 3.1e-19 99.4 62 79.0
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 4.1e-19 99.0 61 82.0
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.2e-18 97.4 122 46.7
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 2.0e-18 96.7 111 49.5
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.7e-18 94.7 67 73.1
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.7e-18 94.7 67 73.1
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 8.5e-17 91.3 55 81.8
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.2e-16 89.4 75 60.0
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.5e-16 88.6 92 52.2
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 9.4e-16 87.8 75 58.7
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.6e-15 87.0 118 47.5
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 2.1e-15 86.7 88 58.0
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 3.0e-14 82.8 90 51.1
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 3.0e-14 82.8 60 66.7
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 8.8e-14 81.3 52 73.1
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 2.6e-13 79.7 49 81.6
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 5.7e-13 78.6 57 71.9
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 7.0e-11 71.6 49 73.5
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.7e-10 69.7 49 69.4
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 1.0e-09 67.8 47 74.5
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 1.5e-08 63.9 32 87.5
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 2.5e-08 63.2 36 86.1
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 3.2e-08 62.8 33 90.9
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 6.1e-07 58.5 36 83.3
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 2.3e-06 56.6 36 69.4


User provided reference genes

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