Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 1.5e-101 372.9 184 100.0
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-96 355.5 184 96.2
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-96 355.5 184 96.2
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 2.4e-96 355.5 184 96.2
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 9.2e-96 353.6 184 95.7
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 9.2e-96 353.6 184 95.7
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 9.2e-96 353.6 184 95.7
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 9.2e-96 353.6 184 95.7
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 9.2e-96 353.6 184 95.7
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 2.0e-95 352.4 184 95.1
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 5.9e-95 350.9 184 94.6
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 3.6e-92 341.7 176 94.9
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 3.6e-92 341.7 184 91.3
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.0e-91 340.1 184 90.8
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.1e-85 320.1 169 94.7
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 4.3e-85 318.2 176 88.1
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 4.3e-85 318.2 184 84.8
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 7.3e-85 317.4 184 84.8
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 8.0e-84 313.9 184 84.2
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 8.0e-84 313.9 184 84.2
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 2.3e-83 312.4 184 83.2
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 3.1e-83 312.0 184 83.7
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 1.5e-82 309.7 184 82.6
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 2.0e-82 309.3 184 83.2
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 5.8e-82 307.8 184 84.2
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 3.7e-81 305.1 184 82.1
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 6.4e-81 304.3 184 82.1
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 1.4e-80 303.1 184 80.4
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 7.1e-80 300.8 184 81.0
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 2.1e-79 299.3 184 80.4
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 2.1e-79 299.3 184 80.4
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 2.1e-79 299.3 184 80.4
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 2.1e-79 299.3 184 80.4
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 2.1e-79 299.3 184 80.4
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 2.1e-79 299.3 184 80.4
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 2.7e-79 298.9 184 80.4
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 4.6e-79 298.1 184 81.0
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 4.6e-79 298.1 176 84.7
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 7.8e-79 297.4 184 81.5
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 3.1e-75 285.4 141 99.3
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 4.4e-74 281.6 170 81.2
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 4.4e-74 281.6 170 81.2
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.2e-71 273.5 176 79.0
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.3e-70 270.0 176 78.4
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 3.9e-70 268.5 170 77.6
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 7.3e-69 264.2 184 73.4
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 1.2e-68 263.5 184 72.3
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.7e-68 261.5 176 75.6
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.7e-68 261.5 176 75.6
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.3e-65 253.4 176 73.9
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.9e-64 249.6 184 69.0
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 9.6e-61 237.3 176 69.9
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.1e-60 236.1 149 78.5
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.1e-60 236.1 176 69.3
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 1.8e-59 233.0 184 67.4
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 1.2e-58 230.3 184 67.4
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 5.8e-58 228.0 119 94.1
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 5.8e-58 228.0 119 94.1
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 9.9e-58 227.3 133 82.0
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 7.1e-56 221.1 119 91.6
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 1.6e-55 219.9 112 95.5
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.0e-54 217.2 181 65.7
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.3e-54 216.9 176 64.8
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 5.1e-54 214.9 184 63.0
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.8e-51 206.5 129 77.5
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 5.8e-50 201.4 127 79.5
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 2.2e-49 199.5 111 86.5
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.9e-49 199.1 111 85.6
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 6.4e-49 198.0 169 64.5
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-49 197.6 119 79.8
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-49 197.6 119 79.8
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 8.4e-49 197.6 119 79.8
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.2e-48 195.7 131 73.3
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 4.2e-48 195.3 119 79.8
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.4e-48 194.9 106 87.7
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.2e-47 193.7 141 70.2
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.2e-47 193.7 119 79.0
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.1e-47 193.0 119 80.7
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 6.0e-47 191.4 185 57.3
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 7.9e-47 191.0 111 82.9
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 7.9e-47 191.0 119 78.2
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 1.8e-46 189.9 183 54.1
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-45 185.7 119 76.5
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 9.6e-45 184.1 115 80.9
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.3e-44 183.7 107 83.2
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-43 180.6 119 74.8
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 3.1e-43 179.1 102 83.3
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 1.2e-42 177.2 172 47.1
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 1.4e-40 170.2 186 55.4
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 1.6e-39 166.8 98 83.7
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 2.1e-39 166.4 177 48.0
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 1.3e-38 163.7 192 50.5
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 2.3e-38 162.9 126 65.9
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 6.7e-38 161.4 114 68.4
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 6.7e-38 161.4 118 66.1
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.1e-37 160.6 191 50.3
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 3.3e-37 159.1 96 82.3
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 3.3e-37 159.1 88 88.6
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.4e-37 157.9 97 80.4
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 9.6e-37 157.5 88 87.5
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 1.3e-36 157.1 112 72.3
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 2.1e-36 156.4 112 67.9
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 2.8e-36 156.0 88 85.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 3.7e-36 155.6 88 84.1
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.7e-36 155.6 147 59.9
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.7e-36 155.6 185 51.4
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 6.2e-36 154.8 92 80.4
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 6.2e-36 154.8 88 87.5
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 6.2e-36 154.8 97 77.3
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 8.2e-36 154.5 96 79.2
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 8.2e-36 154.5 96 79.2
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.4e-35 153.7 97 76.3
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.4e-35 153.7 89 82.0
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.4e-35 153.7 95 78.9
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.8e-35 153.3 151 57.0
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 1.8e-35 153.3 151 57.0
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 2.4e-35 152.9 88 81.8
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 9.0e-35 151.0 87 81.6
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 9.0e-35 151.0 162 53.1
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 1.5e-34 150.2 162 55.6
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 2.6e-34 149.4 97 75.3
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 4.5e-34 148.7 94 74.5
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.0e-33 147.5 89 79.8
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 1.3e-33 147.1 119 60.5
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 1.7e-33 146.7 119 65.5
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 1.7e-33 146.7 175 51.4
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 2.9e-33 146.0 88 81.8
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.9e-33 146.0 176 47.7
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.8e-33 145.6 131 58.0
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 2.7e-31 139.4 174 46.0
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 1.0e-30 137.5 111 65.8
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.9e-30 135.6 91 73.6
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 5.1e-30 135.2 86 79.1
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 2.8e-28 129.4 80 81.2
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.7e-28 129.0 85 74.1
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 4.8e-28 128.6 167 47.9
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-27 127.5 70 85.7
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.5e-26 123.6 91 68.1
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 1.3e-25 120.6 60 98.3
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.1e-24 117.5 70 80.0
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 2.5e-24 116.3 60 93.3
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.2e-24 115.9 69 79.7
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.7e-21 105.1 118 52.5
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 3.7e-20 102.4 72 70.8
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 4.8e-20 102.1 97 56.7
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 6.3e-20 101.7 155 42.6
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.8e-19 100.1 70 67.1
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 3.1e-19 99.4 62 79.0
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.2e-18 97.4 122 46.7
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 2.0e-18 96.7 111 49.5
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 3.4e-18 95.9 63 79.4
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 2.2e-17 93.2 55 83.6
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 6.5e-17 91.7 53 84.9
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 6.5e-17 91.7 55 83.6
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 8.5e-17 91.3 63 74.6
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.2e-16 89.4 75 60.0
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 9.4e-16 87.8 75 58.7
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.6e-15 87.0 118 47.5
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 2.1e-15 86.7 93 57.0
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 2.7e-15 86.3 52 82.7
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.0e-14 82.8 61 70.5
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.0e-14 82.8 61 70.5
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 3.0e-14 82.8 60 66.7
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 3.9e-14 82.4 90 51.1
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.5e-13 80.5 89 50.6
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 3.7e-12 75.9 55 69.1
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 1.1e-11 74.3 46 80.4
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 7.0e-11 71.6 46 73.9
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 7.0e-11 71.6 49 73.5
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 1.7e-09 67.0 48 70.8
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 5.0e-09 65.5 47 68.1
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 1.5e-08 63.9 32 87.5
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 2.5e-08 63.2 36 86.1
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 3.2e-08 62.8 33 90.9
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 1.6e-07 60.5 46 67.4
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 2.3e-06 56.6 36 69.4


User provided reference genes

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