Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 1.1e-101 373.2 185 100.0
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 98.9
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 98.9
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 98.9
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 98.9
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 9.5e-101 370.2 185 98.9
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 2.1e-100 369.0 185 98.4
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 6.2e-100 367.5 185 98.4
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 6.2e-100 367.5 185 98.4
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 6.2e-100 367.5 185 98.4
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 1.3e-97 359.8 185 95.7
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 3.7e-97 358.2 185 95.1
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 2.4e-96 355.5 182 95.6
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 1.6e-95 352.8 184 94.6
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.2e-90 336.7 170 98.2
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.5e-90 336.3 185 88.6
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.6e-90 335.5 185 88.6
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 2.9e-89 332.0 182 88.5
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 8.4e-89 330.5 185 87.6
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 8.4e-89 330.5 185 87.6
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 8.4e-89 330.5 185 87.6
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 1.1e-88 330.1 185 88.1
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 5.4e-88 327.8 185 87.0
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 1.2e-87 326.6 185 87.0
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 4.6e-87 324.7 185 88.1
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 3.9e-86 321.6 185 85.4
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 5.1e-86 321.2 185 84.9
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 6.6e-86 320.9 185 85.4
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 7.3e-85 317.4 185 84.3
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 7.3e-85 317.4 185 84.3
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 7.3e-85 317.4 185 84.3
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 7.3e-85 317.4 185 84.3
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 7.3e-85 317.4 185 84.3
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 7.3e-85 317.4 185 84.3
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 2.8e-84 315.5 185 83.8
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 4.7e-84 314.7 185 85.4
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 6.2e-84 314.3 185 83.8
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 1.4e-83 313.2 185 84.3
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 1.8e-83 312.8 185 84.9
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 6.0e-79 297.7 171 84.8
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 6.0e-79 297.7 171 84.8
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 8.1e-76 287.3 141 99.3
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-75 286.6 182 79.7
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.5e-74 283.1 182 79.1
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 3.4e-74 282.0 185 77.8
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 1.7e-73 279.6 185 75.7
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.4e-72 274.6 182 76.4
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.4e-72 274.6 182 76.4
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.5e-69 266.5 182 74.7
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 8.1e-68 260.8 185 71.4
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 7.6e-66 254.2 170 73.5
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 3.8e-65 251.9 185 71.9
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.4e-64 250.0 158 78.5
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.9e-64 249.6 182 70.9
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.1e-64 247.7 182 70.3
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 9.3e-64 247.3 185 71.4
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 1.1e-61 240.4 120 98.3
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 1.1e-61 240.4 120 98.3
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 7.4e-61 237.7 119 97.5
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 9.0e-59 230.7 185 66.5
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 9.0e-59 230.7 182 66.5
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 2.2e-57 226.1 133 81.2
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.1e-56 223.8 130 83.1
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 2.7e-55 219.2 112 94.6
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 2.3e-54 216.1 167 69.5
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 6.7e-54 214.5 120 85.8
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 6.7e-54 214.5 120 85.8
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 6.7e-54 214.5 120 85.8
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 1.9e-53 213.0 118 86.4
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.3e-53 212.2 117 86.3
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 4.3e-53 211.8 119 85.7
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 9.6e-53 210.7 120 85.0
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.6e-52 209.9 120 86.7
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 4.8e-52 208.4 186 61.3
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.3e-52 208.0 175 64.6
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 2.4e-51 206.1 194 55.7
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 5.3e-51 204.9 127 80.3
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 9.0e-51 204.1 117 83.8
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 9.0e-51 204.1 120 83.3
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-50 202.6 120 82.5
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.9e-49 199.1 132 73.5
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 8.5e-49 197.6 120 80.8
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.1e-48 197.2 141 70.9
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.2e-48 195.7 106 87.7
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 5.5e-48 194.9 113 83.2
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 7.2e-48 194.5 124 79.8
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 1.1e-45 187.2 187 59.4
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 1.5e-45 186.8 178 48.3
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 1.8e-43 179.9 110 79.1
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 6.9e-43 177.9 184 48.4
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.5e-42 175.3 98 87.8
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 7.7e-42 174.5 127 70.1
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.7e-41 173.3 97 88.7
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-41 172.9 148 64.9
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 2.2e-41 172.9 115 73.0
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 2.2e-41 172.9 119 70.6
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.8e-41 172.2 98 84.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 5.0e-41 171.8 97 86.6
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 5.0e-41 171.8 97 86.6
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 8.5e-41 171.0 98 83.7
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 8.5e-41 171.0 96 86.5
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.4e-40 170.2 186 54.8
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 3.2e-40 169.1 94 88.3
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 3.2e-40 169.1 94 86.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 4.2e-40 168.7 94 85.1
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 7.2e-40 167.9 94 88.3
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 7.2e-40 167.9 113 72.6
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 7.2e-40 167.9 163 57.7
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 7.2e-40 167.9 190 51.6
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 9.4e-40 167.5 94 87.2
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 9.4e-40 167.5 98 83.7
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.6e-39 166.8 95 83.2
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.1e-39 166.4 157 58.6
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.1e-39 166.4 157 58.6
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 2.1e-39 166.4 97 82.5
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.9e-39 164.5 96 81.2
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 1.0e-38 164.1 163 59.5
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.4e-38 163.7 189 50.8
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 5.1e-38 161.8 120 70.8
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.1e-37 160.6 95 81.1
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.3e-37 159.1 182 49.5
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 4.4e-37 158.7 176 54.5
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 7.4e-37 157.9 90 82.2
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 9.7e-37 157.5 121 69.4
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 2.8e-36 156.0 89 82.0
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 3.7e-36 155.6 94 80.9
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.1e-35 152.1 87 87.4
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.9e-35 151.4 94 75.5
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 1.2e-34 150.6 117 67.5
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 2.0e-34 149.8 119 61.3
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.9e-34 148.3 131 58.8
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 2.2e-33 146.4 81 90.1
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-33 146.4 86 82.6
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 5.5e-32 141.7 174 45.4
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 4.7e-31 138.7 92 75.0
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.0e-30 137.5 91 73.6
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.7e-28 129.0 167 47.9
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.4e-27 126.3 70 85.7
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 1.3e-25 120.6 60 98.3
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.7e-25 120.2 70 81.4
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.0e-25 118.6 69 81.2
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 1.5e-24 117.1 60 95.0
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.5e-24 116.3 125 53.6
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 1.4e-22 110.5 64 89.1
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 4.0e-22 109.0 96 60.4
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.2e-21 107.5 64 85.9
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 5.7e-21 105.1 72 72.2
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 2.8e-20 102.8 62 82.3
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.8e-20 102.8 70 68.6
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 3.7e-20 102.4 155 43.2
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 4.8e-20 102.1 62 80.6
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 4.8e-20 102.1 61 83.6
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.8e-19 100.1 122 47.5
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 3.1e-19 99.4 111 50.5
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 5.3e-19 98.6 62 77.4
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 1.2e-18 97.4 61 80.3
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 8.5e-17 91.3 53 81.1
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 8.5e-17 91.3 53 81.1
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-16 90.9 75 60.0
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.9e-16 90.1 75 61.3
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 2.5e-16 89.7 55 80.0
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.5e-16 89.7 92 52.2
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 5.5e-16 88.6 118 47.5
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 1.2e-15 87.4 88 58.0
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 4.7e-15 85.5 60 68.3
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 2.0e-13 80.1 90 51.1
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 2.6e-13 79.7 52 71.2
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 5.7e-13 78.6 99 48.5
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 7.5e-13 78.2 49 79.6
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 2.0e-10 70.1 49 71.4
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 7.7e-10 68.2 49 67.3
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 2.9e-09 66.2 36 88.9
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 3.8e-09 65.9 47 72.3
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 5.0e-09 65.5 33 93.9
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 8.6e-09 64.7 32 90.6
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.8e-06 57.0 36 80.6
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 2.3e-06 56.6 36 69.4


User provided reference genes

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