Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p00740 Brassica napus HOM05D000327 ORTHO05D027709 4.9e-137 491.1 243 100.0
BolC9t53008H Brassica oleracea HOM05D000327 ORTHO05D027709 4.9e-137 491.1 243 100.0
BcaC09g51577 Brassica carinata HOM05D000327 ORTHO05D000218 3.5e-95 352.1 200 92.0
BolC1t01153H Brassica oleracea HOM05D000327 ORTHO05D000218 1.7e-94 349.7 200 91.5
A09p47490 Brassica napus HOM05D000327 ORTHO05D000218 1.7e-89 333.2 200 87.5
BraA09t40207Z Brassica rapa HOM05D000327 ORTHO05D000218 1.7e-89 333.2 200 87.5
A09p00120 Brassica napus HOM05D000327 ORTHO05D027709 3.5e-79 298.9 185 86.5
BcaC04g24134 Brassica carinata HOM05D000327 ORTHO05D027709 4.3e-77 292.0 164 90.2
BcaB07g34122 Brassica carinata HOM05D000327 ORTHO05D000218 6.2e-76 288.1 199 78.9
C05p07080 Brassica napus HOM05D000327 ORTHO05D000218 1.4e-75 287.0 204 79.9
BolC5t29463H Brassica oleracea HOM05D000327 ORTHO05D000218 1.4e-75 287.0 204 79.9
BolC1t01155H Brassica oleracea HOM05D000327 ORTHO05D000218 3.8e-73 278.9 198 77.8
BcaC05g24758 Brassica carinata HOM05D000327 ORTHO05D000218 4.1e-67 258.8 204 74.0
Carub.0008s2193 Capsella rubella HOM05D000327 ORTHO05D000218 2.2e-52 209.9 198 63.6
AT2G19610 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 3.7e-52 209.1 202 63.9
AL4G20390 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 8.2e-52 208.0 224 58.9
CARHR108310 Cardamine hirsuta HOM05D000327 ORTHO05D000218 4.2e-48 195.7 204 61.3
BcaC09g51565 Brassica carinata HOM05D000327 ORTHO05D000218 1.4e-43 180.6 140 70.7
AT5G07640 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 2.9e-33 146.4 183 49.7
AL6G19590 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 5.7e-29 132.1 199 44.2
BraA06t23796Z Brassica rapa HOM05D000327 ORTHO05D000218 1.4e-27 127.5 74 81.1
A06p05870 Brassica napus HOM05D000327 ORTHO05D000218 2.4e-27 126.7 74 82.4
MD11G1125800 Malus domestica HOM05D000327 ORTHO05D000218 2.8e-23 113.2 218 35.3
Thhalv10002469m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 8.9e-22 108.2 199 38.2
RcHm_v2.0_Chr5g0060881 Rosa chinensis HOM05D000327 ORTHO05D000218 1.2e-21 107.8 206 34.5
BcaB01g01084 Brassica carinata HOM05D000327 ORTHO05D000218 1.5e-21 107.5 200 39.0
THA.LOC104810840 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 1.5e-21 107.5 199 38.2
MD11G1126100 Malus domestica HOM05D000327 ORTHO05D000218 2.6e-21 106.7 200 37.5
AL5G24010 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 3.4e-21 106.3 228 34.6
BcaC01g01968 Brassica carinata HOM05D000327 ORTHO05D000218 3.4e-21 106.3 199 37.7
C03p69970 Brassica napus HOM05D000327 ORTHO05D000218 3.4e-21 106.3 199 37.7
BolC3t19257H Brassica oleracea HOM05D000327 ORTHO05D000218 3.4e-21 106.3 199 37.7
Manes.04G025200 Manihot esculenta HOM05D000327 ORTHO05D000218 5.7e-21 105.5 206 35.4
TWI75G1725 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 9.8e-21 104.8 233 35.2
CANSAT54G2823 Cannabis sativa HOM05D000327 ORTHO05D000218 1.3e-20 104.4 200 34.0
FvH4_3g33450 Fragaria vesca HOM05D000327 ORTHO05D000218 1.3e-20 104.4 200 34.0
Prupe.6G094500 Prunus persica HOM05D000327 ORTHO05D000218 2.2e-20 103.6 217 34.1
MELO3C005007.2 Cucumis melo HOM05D000327 ORTHO05D000218 2.8e-20 103.2 208 35.1
RcHm_v2.0_Chr5g0060821 Rosa chinensis HOM05D000327 ORTHO05D000218 2.8e-20 103.2 220 32.3
A06p21350 Brassica napus HOM05D000327 ORTHO05D000218 3.7e-20 102.8 199 37.2
Aa31sc447G30 Aethionema arabicum HOM05D000327 ORTHO05D000218 4.9e-20 102.4 217 35.9
BraA06t25225Z Brassica rapa HOM05D000327 ORTHO05D000218 4.9e-20 102.4 199 37.2
Sp5g15910 Schrenkiella parvula HOM05D000327 ORTHO05D000218 6.3e-20 102.1 199 37.2
ClCG03G002380 Citrullus lanatus HOM05D000327 ORTHO05D000218 1.4e-19 100.9 223 33.6
Prupe.6G094200 Prunus persica HOM05D000327 ORTHO05D000218 1.4e-19 100.9 200 35.5
CiPaw.13G106700 Carya illinoinensis HOM05D000327 ORTHO05D000218 1.8e-19 100.5 216 35.2
CsaV3_1G013060 Cucumis sativus L. HOM05D000327 ORTHO05D000218 2.4e-19 100.1 209 34.4
RcHm_v2.0_Chr5g0060811 Rosa chinensis HOM05D000327 ORTHO05D000218 2.4e-19 100.1 200 33.0
QL01p037042 Quercus lobata HOM05D000327 ORTHO05D000218 3.2e-19 99.8 215 35.8
RcHm_v2.0_Chr5g0060851 Rosa chinensis HOM05D000327 ORTHO05D000218 4.1e-19 99.4 223 32.3
Cfa011368 Carpinus fangiana HOM05D000327 ORTHO05D000218 5.4e-19 99.0 236 33.9
TWI79G0034 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 5.4e-19 99.0 233 33.9
Potri.009G150100 Populus trichocarpa HOM05D000327 ORTHO05D000218 7.0e-19 98.6 213 33.8
Carub.0005s1128 Capsella rubella HOM05D000327 ORTHO05D000218 9.2e-19 98.2 230 32.6
Sed0010914 Sechium edule HOM05D000327 ORTHO05D000218 2.7e-18 96.7 219 32.9
Sabra09G0118800 Salix brachista HOM05D000327 ORTHO05D000218 7.8e-18 95.1 213 33.3
FvH4_3g33470 Fragaria vesca HOM05D000327 ORTHO05D000218 1.7e-17 94.0 210 33.8
Thecc.09G260500 Theobroma cacao HOM05D000327 ORTHO05D000218 2.3e-17 93.6 200 32.0
FAN11G2781 Fragaria x ananassa HOM05D000327 ORTHO05D000218 2.9e-17 93.2 224 33.0
Sed0008032 Sechium edule HOM05D000327 ORTHO05D000218 2.9e-17 93.2 208 32.7
Haze_23927 Corylus avellana HOM05D000327 ORTHO05D000218 3.9e-17 92.8 202 33.2
Hma1.2p1_0958F.1_g241500 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 3.3e-16 89.7 220 31.8
Carub.0005s0923 Capsella rubella HOM05D000327 ORTHO05D000218 1.2e-15 87.8 79 57.0
Gohir.D07G120500 Gossypium hirsutum HOM05D000327 ORTHO05D000218 1.6e-15 87.4 203 34.0
Gorai.001G129800 Gossypium raimondii HOM05D000327 ORTHO05D000218 1.6e-15 87.4 203 34.0
Haze_23928 Corylus avellana HOM05D000327 ORTHO05D000218 2.1e-15 87.0 217 31.8
Gohir.A07G116101 Gossypium hirsutum HOM05D000327 ORTHO05D000218 2.1e-15 87.0 203 34.0
Cpa.g.sc139.63 Carica papaya HOM05D000327 ORTHO05D000218 3.6e-15 86.3 238 31.5
Gohir.A09G106100 Gossypium hirsutum HOM05D000327 ORTHO05D000218 4.7e-15 85.9 200 31.0
Cfa011370 Carpinus fangiana HOM05D000327 ORTHO05D000218 6.1e-15 85.5 194 33.5
Hma1.2p1_0958F.1_g241510 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 6.1e-15 85.5 239 31.0
TWI31G0941 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 8.0e-15 85.1 217 31.3
Dinv06223 Davidia involucrata HOM05D000327 ORTHO05D000218 1.4e-14 84.3 200 32.5
Hma1.2p1_0958F.1_g241550 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.4e-14 84.3 229 31.0
CSS0041180 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.8e-14 84.0 242 29.3
ECA233G0642 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.8e-14 84.0 193 32.1
ECA233G3883 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.8e-14 84.0 205 30.7
Gorai.006G120800 Gossypium raimondii HOM05D000327 ORTHO05D000218 1.8e-14 84.0 199 32.2
Hma1.2p1_2713F.1_g327380 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.8e-14 84.0 229 31.0
Gohir.D09G102800 Gossypium hirsutum HOM05D000327 ORTHO05D000218 3.1e-14 83.2 200 31.5
Rhsim13G0092200 Rhododendron simsii HOM05D000327 ORTHO05D000218 4.0e-14 82.8 230 29.6
Lalb_Chr01g0004151 Lupinus albus HOM05D000327 ORTHO05D000218 1.5e-13 80.9 199 29.6
Eucgr.J00956 Eucalyptus grandis HOM05D000327 ORTHO05D000218 2.0e-13 80.5 203 33.5
SHI06041 Sapria himalayana HOM05D000327 ORTHO05D000218 3.4e-13 79.7 219 30.6
FvH4_3g33471 Fragaria vesca HOM05D000327 ORTHO05D000218 4.4e-13 79.3 155 36.1
Lj3g0001518 Lotus japonicus HOM05D000327 ORTHO05D000218 5.8e-13 79.0 233 33.0
TPR.G14922 Trifolium pratense HOM05D000327 ORTHO05D000218 5.8e-13 79.0 200 32.5
HanXRQChr02g0051341 Helianthus annuus HOM05D000327 ORTHO05D000218 9.8e-13 78.2 204 32.4
Lj3g0016538 Lotus japonicus HOM05D000327 ORTHO05D000218 9.8e-13 78.2 201 32.3
arahy.Tifrunner.gnm1.ann1.PRB4HP Arachis hypogaea HOM05D000327 ORTHO05D000218 1.3e-12 77.8 218 31.2
Oeu012674.1 Olea europaea HOM05D000327 ORTHO05D000218 1.3e-12 77.8 210 31.0
Sp6g21870 Schrenkiella parvula HOM05D000327 ORTHO05D000218 1.7e-12 77.4 198 29.3
arahy.Tifrunner.gnm1.ann1.ARC7JY Arachis hypogaea HOM05D000327 ORTHO05D000218 2.2e-12 77.0 218 31.2
arahy.Tifrunner.gnm1.ann1.LWB7Z6 Arachis hypogaea HOM05D000327 ORTHO05D000218 2.2e-12 77.0 218 31.2
Thhalv10000449m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 2.2e-12 77.0 202 27.2
MD11G1125600 Malus domestica HOM05D000327 ORTHO05D000218 2.9e-12 76.6 202 31.7
Prupe.6G094100 Prunus persica HOM05D000327 ORTHO05D000218 2.9e-12 76.6 202 31.2
CARHR150230 Cardamine hirsuta HOM05D000327 ORTHO05D000218 3.7e-12 76.3 147 38.1
Dinv32794 Davidia involucrata HOM05D000327 ORTHO05D000218 3.7e-12 76.3 175 35.4
THA.LOC104810839 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 3.7e-12 76.3 247 28.3
Nitab4.5_0000022g0140 Nicotiana tabacum HOM05D000327 ORTHO05D000218 4.9e-12 75.9 208 29.3
Thecc.09G260600 Theobroma cacao HOM05D000327 ORTHO05D000218 4.9e-12 75.9 200 33.5
Migut.N02623 Erythranthe guttata HOM05D000327 ORTHO05D000218 6.4e-12 75.5 194 32.0
MD11G1125700 Malus domestica HOM05D000327 ORTHO05D000218 6.4e-12 75.5 202 31.7
Nitab4.5_0000022g0110 Nicotiana tabacum HOM05D000327 ORTHO05D000218 6.4e-12 75.5 208 29.3
Oeu005911.1 Olea europaea HOM05D000327 ORTHO05D000218 8.3e-12 75.1 220 27.3
RcHm_v2.0_Chr5g0060891 Rosa chinensis HOM05D000327 ORTHO05D000218 8.3e-12 75.1 240 30.4
vmacro03170 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 8.3e-12 75.1 208 28.8
COL.COLO4_25250 Corchorus olitorius HOM05D000327 ORTHO05D000218 1.1e-11 74.7 200 33.0
PGSC0003DMG400023271 Solanum tuberosum HOM05D000327 ORTHO05D000218 1.1e-11 74.7 228 27.6
vmacro14469 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 1.4e-11 74.3 228 28.9
FvH4_3g33480 Fragaria vesca HOM05D000327 ORTHO05D000218 1.9e-11 73.9 236 29.7
Lj3g0021675 Lotus japonicus HOM05D000327 ORTHO05D000218 1.9e-11 73.9 207 29.0
PSO170G6011 Papaver somniferum HOM05D000327 ORTHO05D000218 1.9e-11 73.9 207 30.9
AL8G10150 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 2.4e-11 73.6 194 31.4
AL8G10160 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 2.4e-11 73.6 194 31.4
Lj3g0028094 Lotus japonicus HOM05D000327 ORTHO05D000218 2.4e-11 73.6 207 29.0
Sc15g0001670 Simmondsia chinensis HOM05D000327 ORTHO05D000218 2.4e-11 73.6 199 30.7
TAR633G1515 Trochodendron aralioides HOM05D000327 ORTHO05D000218 2.4e-11 73.6 206 30.6
AT5G60250 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 3.2e-11 73.2 194 29.4
MELO3C025743.2 Cucumis melo HOM05D000327 ORTHO05D000218 3.2e-11 73.2 217 29.0
Duzib150G1357 Durio zibethinus HOM05D000327 ORTHO05D000218 3.2e-11 73.2 203 31.0
FAN16G3310 Fragaria x ananassa HOM05D000327 ORTHO05D000218 3.2e-11 73.2 236 30.1
Manes.11G140900 Manihot esculenta HOM05D000327 ORTHO05D000218 3.2e-11 73.2 222 30.2
Glyma.12G071900 Glycine max HOM05D000327 ORTHO05D000218 4.1e-11 72.8 200 29.5
PSO170G3308 Papaver somniferum HOM05D000327 ORTHO05D000218 4.1e-11 72.8 207 30.9
Solyc06g005000.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 7.0e-11 72.0 190 30.0
ClCG02G020920 Citrullus lanatus HOM05D000327 ORTHO05D000218 9.2e-11 71.6 170 30.6
MELO3C025744.2 Cucumis melo HOM05D000327 ORTHO05D000218 1.6e-10 70.9 200 29.0
Glyma.11G152542 Glycine max HOM05D000327 ORTHO05D000218 1.6e-10 70.9 199 29.6
Actinidia07112 Actinidia chinensis HOM05D000327 ORTHO05D000218 2.0e-10 70.5 189 30.2
Nitab4.5_0005377g0010 Nicotiana tabacum HOM05D000327 ORTHO05D000218 2.0e-10 70.5 159 33.3
A10p17380 Brassica napus HOM05D000327 ORTHO05D000218 2.7e-10 70.1 197 26.4
PSO063G6856 Papaver somniferum HOM05D000327 ORTHO05D000218 2.7e-10 70.1 209 31.1
VMungo1127G0662 Vigna mungo HOM05D000327 ORTHO05D000218 2.7e-10 70.1 231 29.4
Nitab4.5_0007510g0020 Nicotiana tabacum HOM05D000327 ORTHO05D000218 3.5e-10 69.7 195 28.7
Sed0027187 Sechium edule HOM05D000327 ORTHO05D000218 3.5e-10 69.7 155 31.6
PGSC0003DMG400023248 Solanum tuberosum HOM05D000327 ORTHO05D000218 6.0e-10 68.9 189 29.6
BcaC04g19668 Brassica carinata HOM05D000327 ORTHO05D000218 7.8e-10 68.6 195 26.2
BcaB08g36318 Brassica carinata HOM05D000327 ORTHO05D000218 1.0e-09 68.2 255 24.7
C09p52730 Brassica napus HOM05D000327 ORTHO05D000218 1.0e-09 68.2 195 26.2
BolC9t58139H Brassica oleracea HOM05D000327 ORTHO05D000218 1.0e-09 68.2 195 26.2
Carub.0008s2098 Capsella rubella HOM05D000327 ORTHO05D000218 1.3e-09 67.8 194 29.4
QL01p037014 Quercus lobata HOM05D000327 ORTHO05D000218 1.3e-09 67.8 199 29.1
QL08p016665 Quercus lobata HOM05D000327 ORTHO05D000218 1.3e-09 67.8 199 29.1
COL.COLO4_25249 Corchorus olitorius HOM05D000327 ORTHO05D000218 1.7e-09 67.4 188 33.0
Lsat_1_v5_gn_6_26361 Lactuca sativa HOM05D000327 ORTHO05D000218 1.7e-09 67.4 215 26.5
BcaC04g19671 Brassica carinata HOM05D000327 ORTHO05D000218 3.0e-09 66.6 195 27.2
C09p52740 Brassica napus HOM05D000327 ORTHO05D000218 3.0e-09 66.6 195 27.2
BolC9t58140H Brassica oleracea HOM05D000327 ORTHO05D000218 3.0e-09 66.6 195 27.2
MBI14_g39106_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 3.0e-09 66.6 205 29.3
CsaV3_6G021590 Cucumis sativus L. HOM05D000327 ORTHO05D000218 3.9e-09 66.2 204 29.9
vmacro03169 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 3.9e-09 66.2 196 28.1
CARHR273920 Cardamine hirsuta HOM05D000327 ORTHO05D000218 6.6e-09 65.5 191 26.7
Carub.0004s0506 Capsella rubella HOM05D000327 ORTHO05D000218 1.1e-08 64.7 182 26.4
Migut.N02624 Erythranthe guttata HOM05D000327 ORTHO05D000218 1.9e-08 63.9 193 32.1
Hund08386 Selenicereus undatus HOM05D000327 ORTHO05D000218 1.9e-08 63.9 199 28.1
HanXRQChr13g0401611 Helianthus annuus HOM05D000327 ORTHO05D000218 3.3e-08 63.2 237 28.7
HanXRQChr13g0401641 Helianthus annuus HOM05D000327 ORTHO05D000218 3.3e-08 63.2 209 27.3
A03p11260 Brassica napus HOM05D000327 ORTHO05D000218 4.3e-08 62.8 192 26.6
Eucgr.B02466 Eucalyptus grandis HOM05D000327 ORTHO05D000218 4.3e-08 62.8 230 27.4
Atru.chr3.3695 Acer truncatum HOM05D000327 ORTHO05D000218 9.5e-08 61.6 142 34.5
Aqoxy4G03201 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 9.5e-08 61.6 153 30.1
FAN11G1829 Fragaria x ananassa HOM05D000327 ORTHO05D000218 9.5e-08 61.6 197 27.9
BraA03t10438Z Brassica rapa HOM05D000327 ORTHO05D000218 1.6e-07 60.8 192 26.0
PGR042G2262 Punica granatum HOM05D000327 ORTHO05D000218 1.6e-07 60.8 170 29.4
SGA_v2.0_scaffold2G00922 Striga asiatica HOM05D000327 ORTHO05D000218 2.8e-07 60.1 197 25.4
HanXRQChr13g0401571 Helianthus annuus HOM05D000327 ORTHO05D000218 4.7e-07 59.3 221 25.8
SalBow3G3479 Salvia bowleyana HOM05D000327 ORTHO05D000218 4.7e-07 59.3 191 29.8
AL8G36850 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 6.2e-07 58.9 185 28.6
Phvul.011G072300 Phaseolus vulgaris HOM05D000327 ORTHO05D000218 8.0e-07 58.5 152 32.2
Carub.0007s3273 Capsella rubella HOM05D000327 ORTHO05D000218 1.1e-06 58.2 190 27.9
ATR1159G022 Amborella trichopoda HOM05D000327 ORTHO05D000218 1.8e-06 57.4 198 26.3
Ca_22402_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 1.8e-06 57.4 156 32.1
HanXRQChr13g0401621 Helianthus annuus HOM05D000327 ORTHO05D000218 1.8e-06 57.4 206 25.7
Rhsim01G0220400 Rhododendron simsii HOM05D000327 ORTHO05D000218 1.8e-06 57.4 279 24.4
Dinv32795 Davidia involucrata HOM05D000327 ORTHO05D000218 2.3e-06 57.0 113 35.4
HanXRQChr13g0401671 Helianthus annuus HOM05D000327 ORTHO05D000218 3.1e-06 56.6 172 28.5
HPP92_015574 Vanilla planifolia HOM05D000327 ORTHO05D000218 4.0e-06 56.2 208 25.5
BcaB01g04648 Brassica carinata HOM05D000327 ORTHO05D000218 5.2e-06 55.8 187 26.7
DCAR_006039 Daucus carota HOM05D000327 ORTHO05D000218 8.9e-06 55.1 231 25.1


User provided reference genes

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