Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 0.0e+00 2362.0 1348 100.0
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 2341.6 1348 99.5
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 0.0e+00 2204.1 1357 92.6
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 2181.8 1357 91.5
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 0.0e+00 1822.4 1389 79.3
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 0.0e+00 1783.8 1370 76.2
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 0.0e+00 1727.2 1375 75.3
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 0.0e+00 1724.1 1382 74.4
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 0.0e+00 1711.4 1375 73.7
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 0.0e+00 1709.9 1390 73.7
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 0.0e+00 1699.1 1367 74.8
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1690.6 1364 74.3
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1686.4 1364 73.9
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1686.4 1364 73.9
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 0.0e+00 1681.8 1364 73.9
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1657.1 1268 75.3
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 0.0e+00 1583.5 1387 69.4
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1373.6 1162 68.9
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 0.0e+00 1350.5 1187 65.7
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 3.4e-288 995.7 1443 50.3
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 5.8e-280 968.4 1433 50.2
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 1.7e-276 956.8 1436 47.9
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 4.0e-273 945.7 1448 48.3
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 8.9e-273 944.5 1415 45.4
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 2.6e-272 943.0 1416 46.4
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 5.8e-272 941.8 1420 47.0
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.9e-271 939.5 1425 46.7
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 8.6e-268 927.9 1406 49.6
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 1.5e-267 927.2 1453 46.9
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 1.9e-267 926.8 1429 46.7
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.8e-266 922.9 1404 49.5
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 1.3e-263 914.1 1418 48.9
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 3.7e-263 912.5 1425 47.6
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.1e-262 911.0 1427 48.9
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.2e-262 909.4 1429 47.4
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 1.2e-261 907.5 1402 46.6
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 1.2e-258 897.5 1388 45.7
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 3.6e-258 896.0 1451 46.7
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 1.4e-257 894.0 1419 45.1
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 4.0e-257 892.5 1409 44.1
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 5.2e-257 892.1 1441 45.5
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 6.8e-257 891.7 1436 47.6
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 2.6e-256 889.8 1425 47.6
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 3.4e-256 889.4 1354 50.3
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 7.6e-256 888.3 1432 45.3
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 4.2e-254 882.5 1416 47.3
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 9.3e-254 881.3 1417 47.3
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 5.1e-252 875.5 1475 45.7
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 3.6e-250 869.4 1478 46.4
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 3.6e-250 869.4 1414 45.2
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 8.1e-250 868.2 1407 46.0
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.1e-249 867.8 1394 45.8
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.4e-249 866.7 1475 47.1
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 2.4e-249 866.7 1428 46.1
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 3.1e-249 866.3 1406 45.4
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 5.3e-249 865.5 1419 45.3
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 9.0e-249 864.8 1395 45.3
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 1.4e-246 857.4 1423 46.0
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 7.1e-246 855.1 1422 46.7
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.5e-245 852.8 1398 46.2
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.9e-243 847.0 1405 45.6
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 2.5e-243 846.7 1419 45.7
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 7.4e-243 845.1 1417 45.2
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 2.6e-240 836.6 1389 44.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.3e-239 834.3 1356 47.6
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 4.9e-239 832.4 1402 44.8
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 8.4e-239 831.6 1411 46.5
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 2.4e-238 830.1 1391 45.7
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.6e-237 825.9 1406 44.6
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 1.0e-236 824.7 1400 44.3
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 2.8e-234 816.6 1399 44.4
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 8.1e-234 815.1 1416 46.0
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 6.9e-233 812.0 1396 43.8
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 3.2e-230 803.1 1413 44.1
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 5.5e-230 802.4 1211 49.5
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.0e-228 798.1 1213 44.8
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.0e-228 798.1 1399 44.2
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 1.6e-226 790.8 1415 46.5
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.8e-223 779.6 1236 43.4
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 1.2e-221 774.6 1248 48.7
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 8.7e-220 768.5 1424 43.7
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.1e-219 768.1 1437 43.7
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.7e-215 754.2 1355 45.3
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 5.0e-215 752.7 1221 45.0
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 6.1e-213 745.7 1392 42.7
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 1.4e-212 744.6 1548 41.1
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 6.7e-212 742.3 1413 41.0
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.6e-211 740.3 1422 41.2
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.1e-209 734.9 1475 42.7
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.1e-209 733.0 1149 43.4
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 6.9e-209 732.3 1150 46.1
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 2.2e-207 727.2 1385 40.6
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 2.6e-203 713.8 1026 45.8
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 9.7e-203 711.8 776 55.2
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 4.8e-202 709.5 947 47.9
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.4e-201 708.0 1467 43.1
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.4e-201 708.0 893 48.6
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 8.2e-194 682.2 1428 41.2
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 3.7e-186 656.8 1403 41.6
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 7.0e-185 652.5 1261 39.7
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 5.9e-184 649.4 1507 39.9
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.0e-183 648.7 1382 42.1
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 2.9e-183 647.1 1523 39.9
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 1.3e-175 621.7 1028 43.4
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 2.3e-175 620.9 1415 38.4
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.2e-173 615.1 1385 37.1
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.6e-173 614.8 1385 41.5
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 4.3e-166 590.1 1291 39.9
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.8e-164 584.7 1108 45.9
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-160 572.0 1029 40.8
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.3e-159 567.8 904 44.2
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.5e-158 564.3 1404 39.6
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 1.2e-155 555.4 1174 37.6
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.3e-150 537.0 1058 43.6
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 9.2e-145 519.2 998 39.6
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.6e-144 516.9 1132 39.0
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.6e-136 491.9 805 43.1
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 4.6e-136 490.3 1417 35.4
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 4.9e-130 470.3 1217 36.9
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 9.6e-126 456.1 776 44.6
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 3.5e-120 437.6 1128 34.8
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 7.9e-120 436.4 532 50.2
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 2.6e-107 394.8 1226 33.8
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 2.7e-104 384.8 1293 33.2
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.3e-94 351.3 1408 31.1
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 4.4e-86 324.3 1426 30.2
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.3e-85 322.8 945 38.9
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.2e-82 312.0 312 54.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 3.6e-80 304.7 469 41.4
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 3.7e-77 294.7 1265 27.9
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.5e-75 288.1 1439 29.1
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.8e-68 265.8 1230 28.9
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 1.1e-65 256.5 484 38.8
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 8.3e-61 240.4 390 40.8
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.7e-53 216.1 895 27.9
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 1.1e-52 213.4 1081 27.1
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 5.0e-50 204.5 138 79.0
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 8.0e-48 197.2 1202 26.9
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 8.0e-48 197.2 1124 28.4
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.1e-47 195.3 367 36.2
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 4.0e-47 194.9 445 36.2
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 4.9e-45 188.0 835 25.9
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 6.0e-43 181.0 319 37.6
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 1.3e-42 179.9 258 43.0
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 5.1e-42 177.9 204 51.0
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 7.3e-41 174.1 208 51.4
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.1e-39 168.7 1093 28.1
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.0e-39 168.3 210 47.1
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.0e-38 166.0 228 43.0
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 4.4e-38 164.9 190 46.8
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 3.7e-37 161.8 1035 26.8
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 8.3e-37 160.6 191 48.7
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.4e-36 159.8 980 25.5
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.4e-31 143.3 684 26.8
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.5e-30 139.8 1083 24.7
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 9.9e-30 137.1 154 48.7
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 2.7e-27 129.0 521 29.4
C04p42890 Brassica napus HOM05D001675 ORTHO05D021664 7.8e-27 127.5 93 75.3
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 6.6e-26 124.4 1001 23.4
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 3.3e-25 122.1 604 36.9
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 9.6e-25 120.6 257 31.1
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 9.0e-23 114.0 190 35.3
BolC4t25858H Brassica oleracea HOM05D001675 ORTHO05D001808 1.7e-21 109.8 104 64.4
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 3.2e-20 105.5 120 48.3
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 1.2e-19 103.6 161 30.4
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 7.3e-17 94.4 98 50.0
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 1.3e-16 93.6 270 43.7
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 3.6e-16 92.0 82 54.9
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 3.6e-16 92.0 128 39.1
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 6.9e-15 87.8 940 20.5
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 3.4e-14 85.5 229 37.1
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.5e-14 85.1 88 51.1
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 9.9e-14 84.0 1099 23.1
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 5.4e-12 78.2 58 72.4
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.2e-11 77.0 88 55.7
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 1.6e-11 76.6 86 45.3
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.1e-11 76.3 351 33.0
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 1.9e-09 69.7 69 53.6
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 4.0e-07 62.0 261 34.5


User provided reference genes

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