Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38560H Brassica oleracea HOM05D004976 ORTHO05D004851 3.2e-80 301.6 142 100.0
BolC5t31734H Brassica oleracea HOM05D004976 ORTHO05D004851 7.9e-79 297.0 142 97.9
BolC2t08499H Brassica oleracea HOM05D004976 ORTHO05D004851 2.4e-43 179.1 138 57.2
BolC8t51211H Brassica oleracea HOM05D004976 ORTHO05D004851 2.0e-42 176.0 139 58.3
BraA07t27820Z Brassica rapa HOM05D000207 ORTHO05D001673 2.2e-41 172.6 138 57.2
BraA01t02778Z Brassica rapa HOM05D004976 ORTHO05D004851 5.0e-41 171.4 138 57.2
BolC8t48401H Brassica oleracea HOM05D004976 ORTHO05D004851 5.5e-40 167.9 138 55.8
C05p50100 Brassica napus HOM05D004976 ORTHO05D004851 1.2e-39 166.8 138 55.8
BraA02t07436Z Brassica rapa HOM05D004976 ORTHO05D004851 4.7e-39 164.9 138 53.6
AT2G33160 Arabidopsis thaliana HOM05D000037 ORTHO05D000150 6.1e-39 164.5 139 51.1
BolC5t29232H Brassica oleracea HOM05D004976 ORTHO05D004851 5.2e-38 161.4 135 52.6
BolC7t41689H Brassica oleracea HOM05D004976 ORTHO05D004851 5.7e-37 157.9 135 54.1
BolC1t02896H Brassica oleracea HOM05D004976 ORTHO05D004851 7.4e-37 157.5 128 57.0
BraA03t14020Z Brassica rapa HOM05D004976 ORTHO05D004851 2.4e-35 152.5 132 53.0
AT1G27870 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 7.0e-35 151.0 142 47.9
BraA09t38717Z Brassica rapa HOM05D004976 ORTHO05D004851 7.7e-34 147.5 135 51.1
AT1G47497 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.3e-33 146.7 133 51.1
BraA07t29876Z Brassica rapa HOM05D004976 ORTHO05D004851 1.7e-33 146.4 120 55.8
AT3G25270 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 2.9e-33 145.6 135 45.9
CARHR043800 Cardamine hirsuta HOM05D004976 ORTHO05D004851 3.8e-33 145.2 136 44.9
AT2G04420 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 6.5e-33 144.4 133 45.9
AT2G46460 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 3.2e-32 142.1 133 48.9
Thhalv10019506m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 5.5e-32 141.4 134 45.5
AL3G23800 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 2.7e-31 139.0 140 45.7
AL8G15920 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 3.6e-31 138.7 146 45.9
C08p26150 Brassica napus HOM05D004976 ORTHO05D004851 6.1e-31 137.9 136 51.5
BolC9t55739H Brassica oleracea HOM05D004976 ORTHO05D004851 5.2e-30 134.8 108 54.6
Sp5g16840 Schrenkiella parvula HOM05D004976 ORTHO05D004851 9.7e-29 130.6 140 41.4
CARHR123710 Cardamine hirsuta HOM05D004976 ORTHO05D004851 3.7e-28 128.6 136 41.2
AT1G04625 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 3.1e-27 125.6 124 45.2
BraA06t23723Z Brassica rapa HOM05D004976 ORTHO05D004851 5.9e-26 121.3 135 41.5
BolC2t07249H Brassica oleracea HOM05D004976 ORTHO05D004851 3.8e-25 118.6 99 52.5
A09p37980 Brassica napus HOM05D004976 ORTHO05D004851 6.5e-25 117.9 136 39.7
A10p08070 Brassica napus HOM05D004976 ORTHO05D004851 8.5e-25 117.5 137 39.4
A02p28410 Brassica napus HOM05D004976 ORTHO05D004851 5.5e-24 114.8 134 43.3
C09p05940 Brassica napus HOM05D004976 ORTHO05D004851 7.2e-24 114.4 133 42.1
BolC9t53519H Brassica oleracea HOM05D004976 ORTHO05D004851 7.2e-24 114.4 133 42.1
Sp4g00970 Schrenkiella parvula HOM05D004976 ORTHO05D004851 7.2e-24 114.4 120 44.2
BraA09t36601Z Brassica rapa HOM05D004976 ORTHO05D004851 1.2e-23 113.6 100 51.0
C05p45240 Brassica napus HOM05D004976 ORTHO05D004851 2.3e-22 109.4 107 48.6
BraA09t38437Z Brassica rapa HOM05D004976 ORTHO05D004851 5.2e-22 108.2 87 54.0
BolC2t11077H Brassica oleracea HOM05D004976 ORTHO05D004851 6.8e-22 107.8 135 37.8
BolC9t56783H Brassica oleracea HOM05D004976 ORTHO05D004851 2.2e-20 102.8 85 51.8
AT1G27220 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 2.4e-19 99.4 92 50.0
AT1G77815 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 2.4e-19 99.4 101 40.6
CARHR183650 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.2e-18 97.1 84 47.6
Carub.0004s1022 Capsella rubella HOM05D004976 ORTHO05D004851 1.6e-18 96.7 135 34.1
Sp7g06900 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.3e-17 93.6 93 45.2
BraA09t39138Z Brassica rapa HOM05D004976 ORTHO05D004851 3.8e-17 92.0 81 51.9
BraA01t00584Z Brassica rapa HOM05D004976 ORTHO05D004851 7.2e-16 87.8 97 43.3
Thhalv10022287m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 9.5e-16 87.4 136 34.6
Sp1g19240 Schrenkiella parvula HOM05D004976 ORTHO05D004851 2.8e-15 85.9 80 45.0
C05p41910 Brassica napus HOM05D004976 ORTHO05D004851 1.4e-14 83.6 67 47.8
BolC2t08873H Brassica oleracea HOM05D004976 ORTHO05D004851 6.8e-14 81.3 140 32.1
Thhalv10003001m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.2e-13 80.5 108 33.3
BraA08t35107Z Brassica rapa HOM05D004976 ORTHO05D004851 1.5e-13 80.1 60 60.0
AT1G50160 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 3.4e-13 79.0 69 46.4
AT3G09510 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 3.4e-13 79.0 111 32.4
BolC9t59872H Brassica oleracea HOM05D001406 ORTHO05D002467 9.8e-13 77.4 113 31.9
AT5G43755 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.1e-11 73.9 137 30.7
BolC5t32365H Brassica oleracea HOM05D004976 ORTHO05D004851 2.4e-11 72.8 86 39.5
BcaB01g00479 Brassica carinata HOM05D000003 ORTHO05D004851 9.2e-11 70.9 116 30.2
AT5G65005 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.6e-10 70.1 137 30.7
C08p27020 Brassica napus HOM05D004976 ORTHO05D004851 1.6e-10 70.1 113 30.1
Sp6g11330 Schrenkiella parvula HOM05D004976 ORTHO05D004851 2.0e-10 69.7 74 43.2
Sp6g05670 Schrenkiella parvula HOM05D004976 ORTHO05D004851 3.5e-10 68.9 136 30.9
BcaNung01203 Brassica carinata HOM05D000003 ORTHO05D000004 4.5e-10 68.6 108 36.1
BraA05t22279Z Brassica rapa HOM05D004976 ORTHO05D004851 4.5e-10 68.6 89 39.3
Sp7g13260 Schrenkiella parvula HOM05D000051 ORTHO05D000015 4.5e-10 68.6 73 42.5
BcaC02g10407 Brassica carinata HOM05D004976 ORTHO05D004851 1.0e-09 67.4 119 33.6
AT2G11205 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 2.3e-09 66.2 77 35.1
BolC9t56103H Brassica oleracea HOM05D004976 ORTHO05D004851 2.3e-09 66.2 135 25.9
Thhalv10009902m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 2.3e-09 66.2 61 47.5
C02p26690 Brassica napus HOM05D004976 ORTHO05D004851 2.9e-09 65.9 72 43.1
BolC3t21482H Brassica oleracea HOM05D004976 ORTHO05D004851 3.8e-09 65.5 89 37.1
Aa31LG1G4960 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.6e-09 64.7 105 32.4
Sp3g33160 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.1e-08 63.9 105 30.5
C02p49980 Brassica napus HOM05D004976 ORTHO05D004851 1.5e-08 63.5 84 38.1
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 1.5e-08 63.5 137 32.1
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.3e-08 62.4 105 31.4
Lj4g0004526 Lotus japonicus HOM05D000003 ORTHO05D000022 4.3e-08 62.0 112 32.1
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 5.6e-08 61.6 118 32.2
Sp6g08450 Schrenkiella parvula HOM05D000003 ORTHO05D024751 1.2e-07 60.5 111 26.1
Aa31sc52G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-07 59.7 129 25.6
BolC1t01989H Brassica oleracea HOM05D004976 ORTHO05D004851 2.1e-07 59.7 137 26.3
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 6.1e-07 58.2 138 28.3
C09p45640 Brassica napus HOM05D004976 ORTHO05D004851 6.1e-07 58.2 128 24.2
Atru.chr10.504 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-06 57.0 111 32.4
VMungo0647G2109 Vigna mungo HOM05D000155 ORTHO05D000022 1.8e-06 56.6 147 30.6
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-06 55.8 111 32.4
Atru.chr2.1816 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-06 55.8 113 31.9
BolC7t43279H Brassica oleracea HOM05D004976 ORTHO05D004851 3.0e-06 55.8 58 41.4
Atru.chr9.192 Acer truncatum HOM05D005989 ORTHO05D000022 4.0e-06 55.5 135 29.6
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.0e-06 55.5 105 29.5
Thhalv10003059m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 4.0e-06 55.5 100 30.0
Atru.chr5.1911 Acer truncatum HOM05D005989 ORTHO05D000022 6.8e-06 54.7 111 32.4
AT2G34320 Arabidopsis thaliana HOM05D000003 ORTHO05D001091 6.8e-06 54.7 130 30.8
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 6.8e-06 54.7 135 29.6
Lj6g0010518 Lotus japonicus HOM05D000003 ORTHO05D000022 6.8e-06 54.7 112 28.6
Lj6g0013871 Lotus japonicus HOM05D000003 ORTHO05D000022 6.8e-06 54.7 112 28.6
Lj6g0024047 Lotus japonicus HOM05D000003 ORTHO05D000022 6.8e-06 54.7 112 28.6
PSO063G0205 Papaver somniferum HOM05D000003 ORTHO05D001026 8.9e-06 54.3 141 27.0


User provided reference genes

Program Settings