Gene: AT1G27220

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G27220
  • Transcript Identifier AT1G27220.1
  • Gene Type Coding gene
  • Location Chr1 : 9463806-9465444 : positive

Gene Family Information

  • ID HOM05D000629
  • #Genes/#Species 905/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G27220.1
  • uniprot F4HR59

Descriptions

  • Description paired amphipathic helix repeat-containing protein
  • Computational description paired amphipathic helix repeat-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27250.1); Has 833 Blast hits to 732 proteins in 188 species: Archae - 0; Bacteria - 52; Metazoa - 196; Fungi - 169; Plants - 372; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004523
IEA
Gene OntologyRNA-DNA hybrid ribonuclease activity
GO:0004523
IEA
InterProRNA-DNA hybrid ribonuclease activity
GO:0003714
ISO
PLAZA Homology (enrichment)transcription corepressor activity HOM05D000629

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002156 Ribonuclease H domain
IPR044730 Ribonuclease H-like domain, plant type
IPR036600 Paired amphipathic helix superfamily
IPR003822 Paired amphipathic helix
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
Mapman id Description
35.1 not assigned.annotated