Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 3.2e-234 814.7 410 99.8
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 3.2e-234 814.7 410 100.0
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 4.2e-234 814.3 410 99.8
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.2e-233 812.8 410 99.5
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.5e-231 805.8 410 98.8
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 2.8e-230 801.6 414 98.3
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 1.9e-226 788.9 410 95.9
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.6e-225 785.8 410 95.6
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 8.0e-225 783.5 410 94.9
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 5.7e-223 777.3 410 95.1
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 9.8e-223 776.5 410 93.7
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-222 776.2 410 95.1
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.3e-222 776.2 410 95.1
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.1e-218 763.1 406 93.6
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 5.7e-215 750.7 410 91.5
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 9.5e-210 733.4 412 90.0
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.1e-209 732.3 410 89.3
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 5.2e-208 727.6 410 88.0
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.3e-202 708.4 410 87.3
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 5.6e-202 707.6 414 85.7
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.6e-201 704.9 411 86.9
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 3.6e-201 704.9 408 86.5
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 1.8e-200 702.6 411 85.6
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.3e-200 702.2 412 85.4
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 2.3e-200 702.2 414 85.0
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 2.0e-199 699.1 411 85.6
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 2.0e-199 699.1 411 86.1
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 2.0e-199 699.1 410 85.9
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.6e-199 698.7 411 84.7
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.3e-198 696.4 410 84.6
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.7e-198 696.0 412 84.5
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 3.7e-198 694.9 412 85.2
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 6.4e-198 694.1 407 86.0
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 6.4e-198 694.1 416 83.9
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 8.3e-198 693.7 411 84.9
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.1e-197 693.3 411 85.4
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 1.4e-197 693.0 411 84.7
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 3.2e-197 691.8 410 85.1
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 7.0e-197 690.6 410 84.9
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 7.0e-197 690.6 414 84.3
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.6e-196 689.5 408 84.8
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.6e-196 689.5 412 84.7
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 2.7e-196 688.7 418 83.5
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 2.7e-196 688.7 412 83.5
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 6.0e-196 687.6 411 84.2
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 6.0e-196 687.6 412 84.2
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 7.8e-196 687.2 412 83.7
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.0e-195 686.8 413 84.3
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.7e-195 686.0 412 85.0
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.7e-195 686.0 411 85.6
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 3.9e-195 684.9 410 84.6
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 5.1e-195 684.5 415 84.6
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 1.5e-194 682.9 415 83.6
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.5e-194 682.2 412 84.0
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 4.3e-194 681.4 427 81.5
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.6e-194 681.0 412 83.0
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 7.3e-194 680.6 416 82.2
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 7.3e-194 680.6 411 83.9
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 7.3e-194 680.6 411 83.9
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 9.5e-194 680.2 410 84.1
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-193 679.9 415 83.6
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.2e-193 679.9 410 82.9
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.6e-193 679.5 409 83.4
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 2.1e-193 679.1 411 83.7
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 2.8e-193 678.7 422 81.5
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 4.7e-193 677.9 409 83.1
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.2e-193 677.6 409 83.1
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.2e-193 677.6 409 83.1
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 8.1e-193 677.2 410 82.7
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 3.1e-192 675.2 412 82.3
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 4.0e-192 674.9 374 89.3
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 6.8e-192 674.1 410 82.9
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 8.9e-192 673.7 409 82.6
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.5e-191 672.9 412 82.8
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.5e-191 672.9 414 83.3
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.0e-191 672.5 412 83.0
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 2.6e-191 672.2 410 82.2
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.6e-191 672.2 410 83.7
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.4e-191 671.8 412 81.8
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 4.4e-191 671.4 412 83.7
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 9.9e-191 670.2 410 82.9
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 9.9e-191 670.2 410 82.0
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.3e-190 669.8 413 82.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-190 669.8 422 81.5
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.9e-190 668.7 415 81.7
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 1.1e-189 666.8 412 82.3
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.4e-189 666.4 413 81.6
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 3.2e-189 665.2 411 83.0
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 5.4e-189 664.5 415 81.0
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 9.2e-189 663.7 421 81.9
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.6e-188 662.9 412 81.6
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.6e-188 662.9 412 81.6
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.1e-188 662.5 424 80.9
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 4.6e-188 661.4 434 79.5
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 7.8e-188 660.6 412 79.9
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 1.3e-187 659.8 412 81.1
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-187 659.8 387 85.0
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.7e-187 659.4 416 81.5
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.9e-187 658.3 410 81.2
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 3.3e-186 655.2 413 80.1
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.3e-186 655.2 409 80.7
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 3.3e-186 655.2 410 81.2
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 5.6e-186 654.4 416 79.1
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 7.3e-186 654.1 333 95.2
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 6.2e-185 651.0 375 85.1
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 1.4e-184 649.8 378 85.2
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 4.0e-184 648.3 411 81.3
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 5.6e-178 627.9 377 83.3
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.3e-177 626.7 410 81.0
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 6.2e-177 624.4 353 84.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 3.1e-176 622.1 362 82.0
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.7e-172 609.0 413 76.8
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 6.0e-172 607.8 357 81.2
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.0e-171 607.1 359 79.9
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 7.4e-162 574.3 342 83.9
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.3e-158 563.5 405 71.9
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 2.1e-153 546.2 342 83.3
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 1.4e-152 543.5 326 85.9
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 8.4e-150 534.3 357 72.3
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 1.5e-146 523.5 322 82.3
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.3e-146 522.3 376 67.0
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 4.1e-144 515.4 406 69.0
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 3.8e-142 508.8 274 88.7
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 9.4e-141 504.2 313 81.5
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 4.6e-140 501.9 349 68.8
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 2.4e-136 489.6 300 83.3
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.2e-134 483.0 380 64.7
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.4e-131 473.8 295 83.1
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.3e-130 469.2 369 62.3
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.3e-123 446.4 248 86.7
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.7e-116 422.9 285 75.4
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.6e-116 422.5 285 75.8
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 2.4e-104 383.3 238 76.9
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 9.8e-98 361.3 324 62.0
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 5.8e-66 255.8 132 93.9
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 7.6e-66 255.4 132 93.2
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 4.2e-56 223.0 359 38.7
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 3.8e-49 199.9 104 95.2
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.4e-48 197.2 103 95.1
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.4e-48 197.2 103 95.1
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.1e-47 194.1 118 76.3
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.6e-47 193.0 118 75.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 9.0e-43 178.7 94 93.6
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.1e-37 161.8 101 79.2
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 2.9e-33 147.1 105 77.1
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.9e-31 139.0 94 73.4
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.2e-26 125.2 125 56.8
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 7.7e-26 122.5 103 65.0
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.6e-23 113.6 71 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.4e-22 111.7 59 88.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 8.2e-20 102.4 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 5.3e-19 99.8 59 83.1
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 5.3e-19 99.8 81 64.2
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 3.2e-16 90.5 62 71.0
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 5.5e-08 63.2 84 52.4


User provided reference genes

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