Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 8.4e-41 169.9 82 100.0
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 6.0e-39 163.7 82 96.3
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 1.7e-33 145.6 82 86.6
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 4.3e-29 131.0 82 79.3
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 4.9e-25 117.5 104 61.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 6.4e-25 117.1 117 56.4
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 8.4e-25 116.7 116 56.0
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 1.1e-24 116.3 117 55.6
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 5.4e-24 114.0 116 55.2
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.3e-22 109.4 114 55.3
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 2.3e-22 108.6 115 53.9
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 5.1e-22 107.5 113 55.8
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 5.1e-22 107.5 113 55.8
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.5e-21 105.9 114 55.3
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 4.3e-21 104.4 114 54.4
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 9.6e-21 103.2 112 52.7
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 2.1e-20 102.1 115 53.9
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 8.1e-20 100.1 97 55.7
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.1e-19 99.8 118 50.8
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 2.4e-19 98.6 122 47.5
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 4.0e-19 97.8 116 51.7
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 5.3e-19 97.4 122 47.5
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.2e-18 96.3 116 50.0
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-18 95.5 123 49.6
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.0e-18 95.5 122 46.7
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.6e-18 95.1 119 49.6
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 4.5e-18 94.4 122 47.5
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 7.6e-18 93.6 122 46.7
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.3e-17 92.8 122 45.9
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 3.8e-17 91.3 122 45.1
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 4.9e-17 90.9 122 42.6
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.9e-16 89.0 74 67.6
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 2.5e-16 88.6 75 66.7
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 4.2e-16 87.8 73 67.1
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 9.3e-16 86.7 74 64.9
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 9.3e-16 86.7 74 64.9
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 9.3e-16 86.7 74 64.9
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 2.7e-15 85.1 122 45.1
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 4.6e-15 84.3 92 43.5
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 3.9e-14 81.3 79 59.5
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 3.9e-14 81.3 79 59.5
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.5e-13 79.3 122 41.0
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.5e-13 79.3 102 43.1
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 7.4e-13 77.0 122 37.7
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 9.6e-13 76.6 93 48.4
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.3e-12 76.3 106 39.6
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 1.6e-12 75.9 70 61.4
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 3.7e-12 74.7 122 37.7
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 3.7e-12 74.7 122 39.3
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 3.7e-12 74.7 96 44.8
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 4.8e-12 74.3 122 36.9
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 4.8e-12 74.3 121 39.7
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 6.2e-12 73.9 119 40.3
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.1e-11 73.2 105 40.0
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.1e-11 73.2 106 39.6
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.4e-11 72.8 122 37.7
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 1.4e-11 72.8 100 47.0
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.4e-11 72.8 121 38.8
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 2.4e-11 72.0 98 41.8
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 2.4e-11 72.0 103 37.9
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 3.1e-11 71.6 106 38.7
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 3.1e-11 71.6 108 37.0
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 4.0e-11 71.2 106 38.7
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 4.0e-11 71.2 102 40.2
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 6.9e-11 70.5 95 40.0
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 6.9e-11 70.5 97 43.3
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 9.0e-11 70.1 106 37.7
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.2e-10 69.7 100 39.0
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 1.5e-10 69.3 103 40.8
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 2.0e-10 68.9 97 41.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 2.6e-10 68.6 119 37.0
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.4e-10 68.2 106 36.8
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 3.4e-10 68.2 106 36.8
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 3.4e-10 68.2 103 36.9
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 3.4e-10 68.2 119 37.0
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.5e-10 67.8 117 36.8
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 4.5e-10 67.8 106 35.8
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 5.8e-10 67.4 121 33.9
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 7.6e-10 67.0 106 36.8
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 1.0e-09 66.6 123 35.8
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.3e-09 66.2 103 37.9
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 1.3e-09 66.2 103 37.9
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.3e-09 66.2 115 38.3
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.7e-09 65.9 106 34.0
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.7e-09 65.9 86 39.5
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.7e-09 65.9 97 41.2
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.7e-09 65.9 121 34.7
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 2.2e-09 65.5 105 37.1
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 2.2e-09 65.5 123 33.3
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 2.9e-09 65.1 106 34.9
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 2.9e-09 65.1 106 35.8
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 2.9e-09 65.1 103 36.9
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 3.8e-09 64.7 122 35.2
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 3.8e-09 64.7 106 35.8
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 5.0e-09 64.3 107 37.4
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 5.0e-09 64.3 106 34.9
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 5.0e-09 64.3 103 37.9
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 6.5e-09 63.9 125 32.8
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 6.5e-09 63.9 125 32.8
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.5e-09 63.9 117 35.9
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 6.5e-09 63.9 96 38.5
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 6.5e-09 63.9 105 34.3
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 8.4e-09 63.5 121 33.9
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.4e-09 63.5 121 33.9
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.4e-09 63.5 121 33.9
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.4e-09 63.5 121 33.9
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.4e-09 63.5 121 33.9
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 8.4e-09 63.5 103 36.9
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 8.4e-09 63.5 106 35.8
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.1e-08 63.2 100 36.0
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.9e-08 62.4 122 33.6
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.5e-08 62.0 99 37.4
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 3.2e-08 61.6 111 33.3
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 3.2e-08 61.6 112 34.8
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 4.2e-08 61.2 108 32.4
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 7.1e-08 60.5 101 38.6
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 9.3e-08 60.1 96 38.5
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.1e-07 58.9 113 36.3
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.1e-07 58.9 113 36.3
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 2.7e-07 58.5 109 34.9
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 3.5e-07 58.2 107 32.7
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 4.6e-07 57.8 98 37.8
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.8e-06 55.8 106 31.1
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.8e-06 55.8 60 45.0
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 3.0e-06 55.1 44 54.5
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 5.1e-06 54.3 120 30.8


User provided reference genes

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