Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36827H Brassica oleracea HOM05D001724 ORTHO05D002973 2.0e-101 372.5 190 100.0
BcaB02g10794 Brassica carinata HOM05D001724 ORTHO05D002973 8.7e-41 171.0 285 46.3
BcaNung06014 Brassica carinata HOM05D001724 ORTHO05D002973 4.3e-40 168.7 287 43.6
Sp1g41470 Schrenkiella parvula HOM05D001724 ORTHO05D002973 4.5e-37 158.7 290 42.8
BcaC08g43659 Brassica carinata HOM05D001724 ORTHO05D002973 1.3e-36 157.1 287 42.5
BolC6t36163H Brassica oleracea HOM05D001724 ORTHO05D002973 1.3e-36 157.1 287 42.5
Thhalv10011283m.g Eutrema salsugineum HOM05D001724 ORTHO05D002973 1.7e-36 156.8 295 41.4
C06p10790 Brassica napus HOM05D001724 ORTHO05D002973 2.2e-36 156.4 287 42.2
BraSC56t46398Z Brassica rapa HOM05D001724 ORTHO05D002973 2.9e-36 156.0 284 42.6
AL1G64000 Arabidopsis lyrata HOM05D001724 ORTHO05D002973 3.9e-33 145.6 289 40.8
Carub.0001s4445 Capsella rubella HOM05D001724 ORTHO05D002973 3.9e-33 145.6 292 39.0
AT1G55870 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 8.7e-33 144.4 292 38.4
CARHR045570 Cardamine hirsuta HOM05D001724 ORTHO05D002973 1.3e-25 120.6 286 36.0
Aa31LG10G320 Aethionema arabicum HOM05D001724 ORTHO05D002973 5.1e-25 118.6 295 34.2
BcaC08g44223 Brassica carinata HOM05D001724 ORTHO05D002973 8.7e-25 117.9 100 67.0
TWI39G0509 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 3.7e-15 85.9 64 64.1
RcHm_v2.0_Chr5g0077021 Rosa chinensis HOM05D001724 ORTHO05D002973 1.1e-14 84.3 63 61.9
FvH4_3g42970 Fragaria vesca HOM05D001724 ORTHO05D002973 1.4e-14 84.0 64 60.9
FAN11G2634 Fragaria x ananassa HOM05D001724 ORTHO05D002973 1.4e-14 84.0 64 60.9
FAN16G1447 Fragaria x ananassa HOM05D001724 ORTHO05D002973 1.4e-14 84.0 64 60.9
Ciclev10007611m.g Citrus clementina HOM05D001724 ORTHO05D002973 2.4e-14 83.2 64 60.9
FAN21G0081 Fragaria x ananassa HOM05D001724 ORTHO05D002973 3.1e-14 82.8 64 60.9
Prupe.6G024200 Prunus persica HOM05D001724 ORTHO05D002973 3.1e-14 82.8 64 59.4
FAN25G1954 Fragaria x ananassa HOM05D001724 ORTHO05D002973 4.1e-14 82.4 64 60.9
QL08p003988 Quercus lobata HOM05D001724 ORTHO05D002973 4.1e-14 82.4 290 28.6
QL08p003981 Quercus lobata HOM05D001724 ORTHO05D002973 5.3e-14 82.0 64 59.4
THA.LOC104822731 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 6.9e-14 81.6 66 63.6
Atru.chr2.3696 Acer truncatum HOM05D001724 ORTHO05D002973 9.1e-14 81.3 64 62.5
Haze_09833 Corylus avellana HOM05D001724 ORTHO05D002973 2.0e-13 80.1 64 59.4
MD11G1030900 Malus domestica HOM05D001724 ORTHO05D002973 4.5e-13 79.0 64 57.8
Rhsim06G0230400 Rhododendron simsii HOM05D001724 ORTHO05D002973 5.0e-12 75.5 213 31.0
PGR083G1098 Punica granatum HOM05D001724 ORTHO05D002973 6.5e-12 75.1 64 54.7
Cpa.g.sc12.117 Carica papaya HOM05D001724 ORTHO05D002973 1.1e-11 74.3 64 54.7
CANSAT11G0804 Cannabis sativa HOM05D001724 ORTHO05D002973 1.9e-11 73.6 64 56.2
GSVIVG01014694001 Vitis vinifera HOM05D001724 ORTHO05D002973 1.9e-11 73.6 64 54.7
Lj1A891G67 Lonicera japonica HOM05D001724 ORTHO05D002973 2.5e-11 73.2 64 54.7
Peaxi162Scf00139g01315 Petunia axillaris HOM05D001724 ORTHO05D002973 2.5e-11 73.2 64 54.7
TAR629G2285 Trochodendron aralioides HOM05D001724 ORTHO05D002973 2.5e-11 73.2 266 28.9
Manes.03G141900 Manihot esculenta HOM05D001724 ORTHO05D002973 3.2e-11 72.8 61 60.7
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 4.2e-11 72.4 64 54.7
ClCG10G004430 Citrullus lanatus HOM05D001724 ORTHO05D002973 4.2e-11 72.4 64 54.7
Nn3g20983 Nelumbo nucifera HOM05D001724 ORTHO05D002973 4.2e-11 72.4 64 54.7
MD03G1026800 Malus domestica HOM05D001724 ORTHO05D002973 5.5e-11 72.0 64 53.1
Actinidia04999 Actinidia chinensis HOM05D001724 ORTHO05D002973 7.2e-11 71.6 64 51.6
Dinv10340 Davidia involucrata HOM05D001724 ORTHO05D002973 7.2e-11 71.6 64 53.1
Potri.001G368401 Populus trichocarpa HOM05D001724 ORTHO05D002973 7.2e-11 71.6 65 56.9
Sed0006389 Sechium edule HOM05D001724 ORTHO05D002973 7.2e-11 71.6 64 54.7
MELO3C014116.2 Cucumis melo HOM05D001724 ORTHO05D002973 1.2e-10 70.9 285 26.0
COL.COLO4_09841 Corchorus olitorius HOM05D001724 ORTHO05D002973 1.6e-10 70.5 63 57.1
Hund20648 Selenicereus undatus HOM05D001724 ORTHO05D002973 1.6e-10 70.5 63 54.0
Psat5g167400 Pisum sativum HOM05D001724 ORTHO05D002973 2.1e-10 70.1 64 51.6
Phvul.006G058000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 2.7e-10 69.7 64 50.0
AUR62017111 Chenopodium quinoa HOM05D001724 ORTHO05D002973 3.6e-10 69.3 63 52.4
Lalb_Chr15g0082171 Lupinus albus HOM05D001724 ORTHO05D002973 3.6e-10 69.3 64 50.0
arahy.Tifrunner.gnm1.ann1.I0JGGQ Arachis hypogaea HOM05D001724 ORTHO05D002973 4.7e-10 68.9 64 50.0
arahy.Tifrunner.gnm1.ann1.IH99E4 Arachis hypogaea HOM05D001724 ORTHO05D002973 4.7e-10 68.9 64 50.0
AUR62036464 Chenopodium quinoa HOM05D001724 ORTHO05D002973 4.7e-10 68.9 63 52.4
Migut.H01753 Erythranthe guttata HOM05D001724 ORTHO05D002973 4.7e-10 68.9 59 55.9
CAN.G623.15 Capsicum annuum HOM05D001724 ORTHO05D002973 6.1e-10 68.6 64 50.0
Nitab4.5_0007415g0040 Nicotiana tabacum HOM05D001724 ORTHO05D002973 6.1e-10 68.6 64 51.6
Sc16g0008120 Simmondsia chinensis HOM05D001724 ORTHO05D002973 6.1e-10 68.6 64 56.2
Eucgr.F02044 Eucalyptus grandis HOM05D001724 ORTHO05D002973 7.9e-10 68.2 59 52.5
TPR.G24133 Trifolium pratense HOM05D001724 ORTHO05D002973 7.9e-10 68.2 64 48.4
VMungo0540G2248 Vigna mungo HOM05D001724 ORTHO05D002973 7.9e-10 68.2 64 50.0
CSS0011372 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 1.0e-09 67.8 64 50.0
Gohir.A01G091900 Gossypium hirsutum HOM05D001724 ORTHO05D002973 1.0e-09 67.8 63 50.8
Gohir.D01G062100 Gossypium hirsutum HOM05D001724 ORTHO05D002973 1.0e-09 67.8 63 50.8
Gorai.002G100700 Gossypium raimondii HOM05D001724 ORTHO05D002973 1.0e-09 67.8 63 50.8
Nitab4.5_0002736g0010 Nicotiana tabacum HOM05D001724 ORTHO05D002973 1.0e-09 67.8 64 51.6
EL10Ac4g07558 Beta vulgaris HOM05D001724 ORTHO05D002973 1.4e-09 67.4 63 52.4
Ca_26568_v3 Cicer arietinum L. HOM05D001724 ORTHO05D002973 3.0e-09 66.2 64 50.0
PSO210G1056 Papaver somniferum HOM05D001724 ORTHO05D002973 3.0e-09 66.2 64 51.6
Solyc07g065620.4 Solanum lycopersicum HOM05D001724 ORTHO05D002973 3.0e-09 66.2 64 48.4
Sopen07g033830 Solanum pennellii HOM05D001724 ORTHO05D002973 3.0e-09 66.2 64 48.4
PGSC0003DMG400022169 Solanum tuberosum HOM05D001724 ORTHO05D002973 3.0e-09 66.2 64 48.4
Thecc.07G012700 Theobroma cacao HOM05D001724 ORTHO05D002973 3.0e-09 66.2 64 51.6
MSTRG.13022 Avicennia marina HOM05D001724 ORTHO05D002973 3.9e-09 65.9 227 28.2
Aqoxy1G04266 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 6.7e-09 65.1 59 54.2
HanXRQChr11g0334101 Helianthus annuus HOM05D001724 ORTHO05D002973 6.7e-09 65.1 64 48.4
Ah.06g181460 Amaranthus hybridus HOM05D001724 ORTHO05D002973 8.8e-09 64.7 62 51.6
Oeu049405.1 Olea europaea HOM05D001724 ORTHO05D002973 8.8e-09 64.7 60 51.7
Glyma.18G076100 Glycine max HOM05D001724 ORTHO05D002973 1.1e-08 64.3 64 45.3
Lj6g0025052 Lotus japonicus HOM05D001724 ORTHO05D002973 1.5e-08 63.9 64 50.0
Cc05_g14990 Coffea canephora HOM05D001724 ORTHO05D002973 2.0e-08 63.5 59 52.5
CsaV3_3G004220 Cucumis sativus L. HOM05D001724 ORTHO05D002973 2.0e-08 63.5 64 50.0
Glyma.08G330300 Glycine max HOM05D001724 ORTHO05D002973 2.6e-08 63.2 64 45.3
Lsat_1_v5_gn_7_114340 Lactuca sativa HOM05D001724 ORTHO05D002973 2.6e-08 63.2 64 48.4
CSS0030567 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 9.7e-08 61.2 70 45.7
CSS0031157 Camellia sinensis var. sinensis HOM05D001724 ORTHO05D002973 9.7e-08 61.2 70 45.7
DCAR_017078 Daucus carota HOM05D001724 ORTHO05D002973 2.2e-07 60.1 57 49.1
ECA236G0853 Erigeron canadensis HOM05D001724 ORTHO05D002973 4.8e-07 58.9 64 43.8
SGA_v2.0_scaffold8G04414 Striga asiatica HOM05D001724 ORTHO05D002973 1.8e-06 57.0 63 44.4
FvH4_3g43120 Fragaria vesca HOM05D001724 ORTHO05D002973 7.0e-06 55.1 51 52.9
HPP92_018203 Vanilla planifolia HOM05D001724 ORTHO05D002973 7.0e-06 55.1 59 49.2


User provided reference genes

Program Settings