Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35755H Brassica oleracea HOM05D004425 ORTHO05D005783 3.4e-109 398.3 191 100.0
BolC5t31416H Brassica oleracea HOM05D004425 ORTHO05D005783 2.6e-101 372.1 189 95.2
C05p26970 Brassica napus HOM05D004425 ORTHO05D005783 1.5e-93 346.3 194 87.6
BcaC05g26824 Brassica carinata HOM05D004425 ORTHO05D005783 1.5e-64 250.0 149 83.2
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 4.4e-24 115.5 152 46.7
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 1.3e-23 114.0 157 45.2
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 8.2e-23 111.3 158 44.3
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 8.2e-23 111.3 152 47.4
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 1.1e-22 110.9 195 39.5
Sp5g26750 Schrenkiella parvula HOM05D004425 ORTHO05D005783 1.1e-22 110.9 190 40.5
BcaC08g46598 Brassica carinata HOM05D004425 ORTHO05D005783 1.4e-22 110.5 195 39.0
A07p37870 Brassica napus HOM05D004425 ORTHO05D005783 1.8e-22 110.2 194 38.7
C06p45770 Brassica napus HOM05D004425 ORTHO05D005783 1.8e-22 110.2 194 38.7
BraA07t31352Z Brassica rapa HOM05D004425 ORTHO05D005783 1.8e-22 110.2 194 38.7
BolC6t39629H Brassica oleracea HOM05D004425 ORTHO05D005783 5.3e-22 108.6 194 38.1
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 1.3e-20 104.0 190 35.8
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 2.2e-20 103.2 147 42.9
Migut.C00150 Erythranthe guttata HOM05D004425 ORTHO05D005783 2.5e-19 99.8 149 39.6
Thecc.08G161900 Theobroma cacao HOM05D004425 ORTHO05D005783 2.5e-19 99.8 191 34.0
Atru.chr13.1991 Acer truncatum HOM05D004425 ORTHO05D005783 9.4e-19 97.8 148 38.5
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 1.2e-18 97.4 148 41.2
Lsat_1_v5_gn_9_42380 Lactuca sativa HOM05D004425 ORTHO05D005783 1.2e-18 97.4 154 39.0
MD05G1034600 Malus domestica HOM05D004425 ORTHO05D005783 1.2e-18 97.4 147 38.1
PSO210G1911 Papaver somniferum HOM05D004425 ORTHO05D005783 1.2e-18 97.4 155 39.4
Prupe.8G042900 Prunus persica HOM05D004425 ORTHO05D005783 1.2e-18 97.4 148 39.9
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 1.6e-18 97.1 162 37.0
CSS0010963 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 1.6e-18 97.1 148 39.2
PSO170G0918 Papaver somniferum HOM05D004425 ORTHO05D005783 1.6e-18 97.1 149 39.6
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 1.6e-18 97.1 149 41.6
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 1.6e-18 97.1 197 33.5
Nitab4.5_0003443g0070 Nicotiana tabacum HOM05D004425 ORTHO05D005783 2.1e-18 96.7 150 38.7
Peaxi162Scf00360g00089 Petunia axillaris HOM05D004425 ORTHO05D005783 2.1e-18 96.7 149 38.3
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 2.1e-18 96.7 148 40.5
CSS0011525 Camellia sinensis var. sinensis HOM05D004425 ORTHO05D005783 4.7e-18 95.5 148 38.5
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 4.7e-18 95.5 148 38.5
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 4.7e-18 95.5 148 38.5
Sopen04g028080 Solanum pennellii HOM05D004425 ORTHO05D005783 4.7e-18 95.5 148 37.8
Duzib093G0931 Durio zibethinus HOM05D004425 ORTHO05D005783 6.1e-18 95.1 146 38.4
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 6.1e-18 95.1 156 37.2
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 6.1e-18 95.1 154 38.3
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 6.1e-18 95.1 148 37.2
arahy.Tifrunner.gnm1.ann1.64NVCN Arachis hypogaea HOM05D004425 ORTHO05D005783 8.0e-18 94.7 153 39.9
arahy.Tifrunner.gnm1.ann1.J67SBC Arachis hypogaea HOM05D004425 ORTHO05D005783 8.0e-18 94.7 153 39.9
CARHR291070 Cardamine hirsuta HOM05D004425 ORTHO05D005783 8.0e-18 94.7 56 82.1
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 8.0e-18 94.7 148 40.5
PGSC0003DMG400025077 Solanum tuberosum HOM05D004425 ORTHO05D005783 8.0e-18 94.7 149 36.9
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 1.0e-17 94.4 149 38.3
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.0e-17 94.4 148 37.2
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.0e-17 94.4 148 37.2
FAN27G1841 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.0e-17 94.4 148 37.2
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 1.4e-17 94.0 150 38.7
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 1.4e-17 94.0 153 37.9
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 1.4e-17 94.0 198 33.8
MSTRG.972 Avicennia marina HOM05D004425 ORTHO05D005783 1.8e-17 93.6 148 37.2
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 1.8e-17 93.6 148 37.2
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.8e-17 93.6 148 37.2
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 1.8e-17 93.6 148 37.2
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 1.8e-17 93.6 190 33.7
HanXRQChr11g0320171 Helianthus annuus HOM05D004425 ORTHO05D005783 2.3e-17 93.2 144 39.6
Lalb_Chr01g0009831 Lupinus albus HOM05D004425 ORTHO05D005783 2.3e-17 93.2 149 37.6
Nitab4.5_0003178g0010 Nicotiana tabacum HOM05D004425 ORTHO05D005783 2.3e-17 93.2 150 38.0
Potri.005G197900 Populus trichocarpa HOM05D004425 ORTHO05D005783 2.3e-17 93.2 157 36.9
Solyc04g072036.1 Solanum lycopersicum HOM05D004425 ORTHO05D005783 2.3e-17 93.2 148 37.2
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 3.0e-17 92.8 148 38.5
TWI60G0364 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 3.0e-17 92.8 202 31.7
CAN.G1183.17 Capsicum annuum HOM05D004425 ORTHO05D005783 4.0e-17 92.4 145 37.2
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 4.0e-17 92.4 148 39.2
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 4.0e-17 92.4 149 40.3
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 4.0e-17 92.4 148 37.2
Sabra05G0150700 Salix brachista HOM05D004425 ORTHO05D005783 4.0e-17 92.4 189 32.8
Gohir.A02G062300 Gossypium hirsutum HOM05D004425 ORTHO05D005783 5.2e-17 92.0 145 36.6
Gohir.D02G068000 Gossypium hirsutum HOM05D004425 ORTHO05D005783 5.2e-17 92.0 145 36.6
COL.COLO4_13726 Corchorus olitorius HOM05D004425 ORTHO05D005783 6.7e-17 91.7 146 37.7
Gorai.005G076800 Gossypium raimondii HOM05D004425 ORTHO05D005783 6.7e-17 91.7 145 36.6
VMungo0720G3015 Vigna mungo HOM05D004425 ORTHO05D005783 6.7e-17 91.7 148 37.2
Aqoxy5G02018 Aquilegia oxysepala HOM05D004425 ORTHO05D005783 2.0e-16 90.1 148 37.2
EL10Ac1g01372 Beta vulgaris HOM05D004425 ORTHO05D005783 2.0e-16 90.1 190 32.1
MBI01_g29006_MAGBIO Magnolia biondii HOM05D004425 ORTHO05D005783 2.0e-16 90.1 156 35.9
Potri.002G063400 Populus trichocarpa HOM05D004425 ORTHO05D005783 2.6e-16 89.7 189 32.3
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 2.6e-16 89.7 190 31.1
SalBow7G3651 Salvia bowleyana HOM05D004425 ORTHO05D005783 3.3e-16 89.4 148 35.1
SGA_v2.0_scaffold133G34677 Striga asiatica HOM05D004425 ORTHO05D005783 3.3e-16 89.4 146 37.0
Lalb_Chr06g0161781 Lupinus albus HOM05D004425 ORTHO05D005783 4.4e-16 89.0 148 37.2
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 4.4e-16 89.0 148 35.1
MELO3C019971.2 Cucumis melo HOM05D004425 ORTHO05D005783 9.7e-16 87.8 154 37.7
DCAR_014325 Daucus carota HOM05D004425 ORTHO05D005783 9.7e-16 87.8 147 34.7
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 9.7e-16 87.8 154 39.0
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 9.7e-16 87.8 155 37.4
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 1.3e-15 87.4 151 35.8
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 1.3e-15 87.4 159 35.8
unitig_37.g13122 Utricularia gibba HOM05D004425 ORTHO05D005783 1.3e-15 87.4 155 34.8
Lalb_Chr19g0130031 Lupinus albus HOM05D004425 ORTHO05D005783 1.7e-15 87.0 149 36.9
Sed0006049 Sechium edule HOM05D004425 ORTHO05D005783 1.7e-15 87.0 144 34.7
Ah.05g169010 Amaranthus hybridus HOM05D004425 ORTHO05D005783 2.2e-15 86.7 190 31.6
MD10G1036900 Malus domestica HOM05D004425 ORTHO05D005783 2.8e-15 86.3 52 73.1
Phvul.004G089600 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 3.7e-15 85.9 148 34.5
Hund17360 Selenicereus undatus HOM05D004425 ORTHO05D005783 3.7e-15 85.9 190 32.1
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 6.3e-15 85.1 53 73.6
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 6.3e-15 85.1 154 37.0
ECA232G4000 Erigeron canadensis HOM05D004425 ORTHO05D005783 6.3e-15 85.1 50 76.0
CsaV3_6G004950 Cucumis sativus L. HOM05D004425 ORTHO05D005783 8.2e-15 84.7 154 37.7
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 8.2e-15 84.7 148 37.2
BcaC01g03158 Brassica carinata HOM05D004425 ORTHO05D005783 1.4e-14 84.0 69 62.3
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 1.4e-14 84.0 156 35.9
Lj5g0021674 Lotus japonicus HOM05D004425 ORTHO05D005783 1.8e-14 83.6 50 76.0
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 1.8e-14 83.6 50 74.0
TPR.G17013 Trifolium pratense HOM05D004425 ORTHO05D005783 3.1e-14 82.8 148 35.8
Ca_10656_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 4.1e-14 82.4 148 34.5
DCAR_001192 Daucus carota HOM05D004425 ORTHO05D005783 5.3e-14 82.0 145 34.5
HPP92_022945 Vanilla planifolia HOM05D004425 ORTHO05D005783 5.3e-14 82.0 146 37.0
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 7.0e-14 81.6 156 34.6
arahy.Tifrunner.gnm1.ann1.9T1T9I Arachis hypogaea HOM05D004425 ORTHO05D005783 2.0e-13 80.1 143 35.7
Psat6g190160 Pisum sativum HOM05D004425 ORTHO05D005783 2.0e-13 80.1 50 72.0
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 1.7e-12 77.0 97 44.3
C03p12860 Brassica napus HOM05D004425 ORTHO05D005783 2.2e-12 76.6 107 43.0
HPP92_022936 Vanilla planifolia HOM05D004425 ORTHO05D005783 2.2e-12 76.6 90 44.4
Zm00001eb160710 Zea mays HOM05D004425 ORTHO05D005783 5.0e-12 75.5 90 45.6
arahy.Tifrunner.gnm1.ann1.GMAE2R Arachis hypogaea HOM05D004425 ORTHO05D005783 1.5e-11 73.9 139 35.3
Os01g0589000 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 2.5e-11 73.2 90 42.2
Os05g0535800 Oryza sativa ssp. japonica HOM05D004425 ORTHO05D005783 1.0e-09 67.8 89 42.7
BcaB05g22179 Brassica carinata HOM05D004425 ORTHO05D005783 5.2e-09 65.5 59 57.6
SEGI_21205 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 6.8e-09 65.1 90 42.2
Zm00001eb294080 Zea mays HOM05D004425 ORTHO05D005783 1.2e-08 64.3 89 38.2
Migut.C00138 Erythranthe guttata HOM05D004425 ORTHO05D005783 2.6e-08 63.2 123 35.0
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 2.6e-08 63.2 124 35.5
Oeu061448.2 Olea europaea HOM05D004425 ORTHO05D005783 1.3e-07 60.8 142 28.9
BcaB08g35329 Brassica carinata HOM05D004425 ORTHO05D005783 3.7e-07 59.3 48 58.3
SEGI_25822 Sequoiadendron giganteum HOM05D004425 ORTHO05D005783 8.3e-07 58.2 51 49.0
BcaB02g06626 Brassica carinata HOM05D004425 ORTHO05D005783 1.4e-06 57.4 44 59.1


User provided reference genes

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