Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 7.4e-36 153.3 75 100.0
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.2e-09 66.2 65 56.9
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 3.5e-09 64.7 64 56.2
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 4.5e-09 64.3 64 57.8
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 4.5e-09 64.3 46 73.9
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 7.7e-09 63.5 46 73.9
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 7.7e-09 63.5 46 73.9
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 7.7e-09 63.5 46 73.9
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 58.1
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 7.7e-09 63.5 62 61.3
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.0e-08 63.2 46 71.7
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 1.0e-08 63.2 64 57.8
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 1.0e-08 63.2 64 57.8
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 1.0e-08 63.2 62 58.1
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 1.3e-08 62.8 55 61.8
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 1.3e-08 62.8 62 58.1
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 1.3e-08 62.8 46 73.9
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 1.3e-08 62.8 46 73.9
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 1.3e-08 62.8 55 63.6
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 1.3e-08 62.8 62 58.1
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.7e-08 62.4 62 58.1
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 1.7e-08 62.4 46 73.9
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.7e-08 62.4 55 61.8
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.7e-08 62.4 55 61.8
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 1.7e-08 62.4 46 73.9
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.7e-08 62.4 55 63.6
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 1.7e-08 62.4 46 73.9
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 73.9
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 2.2e-08 62.0 55 61.8
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 73.9
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 73.9
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 73.9
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 71.7
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 71.7
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 2.2e-08 62.0 62 58.1
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 73.9
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 73.9
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 73.9
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 2.2e-08 62.0 46 71.7
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 2.9e-08 61.6 46 73.9
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 2.9e-08 61.6 46 71.7
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 2.9e-08 61.6 62 56.5
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 2.9e-08 61.6 62 56.5
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 2.9e-08 61.6 55 61.8
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 2.9e-08 61.6 67 55.2
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 2.9e-08 61.6 65 55.4
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.9e-08 61.6 46 71.7
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.9e-08 61.6 46 71.7
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 2.9e-08 61.6 46 69.6
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 2.9e-08 61.6 46 71.7
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 2.9e-08 61.6 46 71.7
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 69.6
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 71.7
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 71.7
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 71.7
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 3.8e-08 61.2 65 52.3
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 3.8e-08 61.2 62 54.8
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 71.7
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 3.8e-08 61.2 62 56.5
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 71.7
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 73.9
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 71.7
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 71.7
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 3.8e-08 61.2 46 71.7
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 5.0e-08 60.8 46 73.9
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 5.0e-08 60.8 46 71.7
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 5.0e-08 60.8 46 69.6
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 6.5e-08 60.5 55 60.0
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 6.5e-08 60.5 46 69.6
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 6.5e-08 60.5 46 69.6
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 6.5e-08 60.5 46 69.6
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 6.5e-08 60.5 46 69.6
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 8.5e-08 60.1 46 71.7
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 8.5e-08 60.1 64 53.1
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 8.5e-08 60.1 46 71.7
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 8.5e-08 60.1 62 59.7
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 8.5e-08 60.1 56 58.9
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 1.1e-07 59.7 46 69.6
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 1.1e-07 59.7 46 67.4
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.1e-07 59.7 55 58.2
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.1e-07 59.7 55 58.2
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.5e-07 59.3 45 71.1
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 1.5e-07 59.3 46 71.7
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.5e-07 59.3 46 69.6
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 1.9e-07 58.9 46 69.6
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 1.9e-07 58.9 46 69.6
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 2.5e-07 58.5 51 60.8
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 2.5e-07 58.5 62 54.8
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 3.2e-07 58.2 62 54.8
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 4.2e-07 57.8 46 67.4
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 4.2e-07 57.8 46 67.4
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 4.2e-07 57.8 46 67.4
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 4.2e-07 57.8 62 54.8
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 4.2e-07 57.8 50 62.0
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 5.5e-07 57.4 51 62.7
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 2.1e-06 55.5 46 67.4


User provided reference genes

Program Settings