Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35692H Brassica oleracea HOM05D001816 ORTHO05D002001 3.5e-77 291.6 151 100.0
BcaC08g43233 Brassica carinata HOM05D001816 ORTHO05D002001 8.1e-66 253.8 155 89.0
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 3.1e-41 172.2 140 71.4
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 5.3e-41 171.4 151 67.5
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 5.3e-41 171.4 151 67.5
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 5.3e-41 171.4 151 67.5
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 5.3e-41 171.4 151 67.5
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 5.3e-41 171.4 151 67.5
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 5.3e-41 171.4 151 67.5
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 5.3e-41 171.4 151 67.5
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 3.4e-40 168.7 151 66.9
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.3e-39 166.8 151 65.6
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 6.5e-39 164.5 151 64.9
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 8.5e-39 164.1 151 64.2
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 4.2e-38 161.8 151 63.6
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 5.5e-38 161.4 151 63.6
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 5.5e-38 161.4 135 71.9
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 9.3e-38 160.6 151 63.6
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 1.2e-37 160.2 146 67.1
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 1.5e-35 153.3 151 61.6
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 2.4e-33 146.0 151 57.0
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 5.3e-33 144.8 139 59.7
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 3.4e-32 142.1 146 56.2
Sp1g37050 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.7e-31 139.8 171 53.8
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 8.5e-31 137.5 148 53.4
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 1.4e-28 130.2 150 48.0
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 3.9e-28 128.6 150 48.7
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 5.1e-28 128.3 151 49.7
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 8.8e-28 127.5 150 48.7
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 2.0e-27 126.3 150 47.3
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 2.6e-27 125.9 148 50.7
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 5.7e-27 124.8 142 55.6
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 5.7e-27 124.8 142 55.6
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 5.7e-27 124.8 142 55.6
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 5.7e-27 124.8 133 54.1
MELO3C027308.2 Cucumis melo HOM05D001816 ORTHO05D002001 7.4e-27 124.4 150 47.3
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 7.4e-27 124.4 150 48.0
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 7.4e-27 124.4 150 48.0
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 1.3e-26 123.6 147 50.3
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 1.7e-26 123.2 150 47.3
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 2.2e-26 122.9 132 55.3
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 2.8e-26 122.5 150 49.3
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 3.7e-26 122.1 150 48.0
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 3.7e-26 122.1 150 46.7
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.7e-26 122.1 147 49.0
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 6.3e-26 121.3 147 48.3
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 8.2e-26 120.9 147 48.3
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 8.2e-26 120.9 135 51.9
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.1e-25 120.6 172 44.8
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 1.1e-25 120.6 135 51.9
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.1e-25 120.6 147 48.3
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.1e-25 120.6 150 46.0
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.1e-25 120.6 150 46.0
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.4e-25 120.2 147 48.3
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.4e-25 120.2 150 45.3
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 1.8e-25 119.8 149 47.7
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 1.8e-25 119.8 150 47.3
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.4e-25 119.4 150 45.3
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 3.1e-25 119.0 150 48.7
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 4.1e-25 118.6 150 47.3
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 4.1e-25 118.6 151 47.7
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 5.3e-25 118.2 149 47.0
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 5.3e-25 118.2 135 50.4
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 6.9e-25 117.9 172 42.4
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 6.9e-25 117.9 134 53.0
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 1.2e-24 117.1 133 51.1
Cpa.g.c28071.1 Carica papaya HOM05D001816 ORTHO05D002001 1.5e-24 116.7 150 46.7
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 2.6e-24 115.9 147 46.3
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 2.6e-24 115.9 135 50.4
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 3.4e-24 115.5 149 45.6
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 3.4e-24 115.5 147 46.3
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 1.0e-23 114.0 149 44.3
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 1.0e-23 114.0 149 44.3
BcaC05g27449 Brassica carinata HOM05D001816 ORTHO05D002001 1.7e-23 113.2 99 64.6
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 1.7e-23 113.2 147 45.6
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 2.9e-23 112.5 135 48.9
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 3.8e-23 112.1 149 45.0
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 5.0e-23 111.7 149 45.0
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 5.0e-23 111.7 149 45.0
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 1.1e-22 110.5 150 45.3
Glyma.12G027800 Glycine max HOM05D001816 ORTHO05D002001 1.1e-22 110.5 149 44.3
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 1.1e-22 110.5 149 45.0
Medtr4g074670 Medicago truncatula HOM05D001816 ORTHO05D002001 2.5e-22 109.4 149 43.0
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 4.2e-22 108.6 175 41.7
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 9.4e-22 107.5 138 44.9
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 1.6e-21 106.7 175 41.1
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 6.7e-20 101.3 131 47.3
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 6.7e-20 101.3 156 41.0
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 2.0e-19 99.8 147 42.9
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 7.4e-19 97.8 157 40.1
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 2.2e-18 96.3 151 41.1
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 2.2e-18 96.3 151 41.7
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 2.8e-18 95.9 155 40.0
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.7e-18 95.5 153 39.2
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 4.8e-18 95.1 135 45.2
C05p34040 Brassica napus HOM05D001816 ORTHO05D002001 4.8e-18 95.1 123 52.0
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 6.3e-18 94.7 147 41.5
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 1.1e-17 94.0 150 40.7
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.1e-17 94.0 157 38.2
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.4e-17 93.6 153 39.2
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 2.4e-17 92.8 153 39.2
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 3.1e-17 92.4 157 38.2
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 3.1e-17 92.4 157 38.2
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 4.1e-17 92.0 153 38.6
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 7.0e-17 91.3 157 36.3
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 7.0e-17 91.3 157 38.9
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 7.0e-17 91.3 157 38.9
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 9.1e-17 90.9 150 40.0
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 9.1e-17 90.9 150 40.0
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 9.1e-17 90.9 146 38.4
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 1.2e-16 90.5 148 34.5
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 1.2e-16 90.5 133 38.3
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.6e-16 90.1 150 40.0
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 2.0e-16 89.7 157 36.9
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 2.6e-16 89.4 147 39.5
Cc11_g00080 Coffea canephora HOM05D001816 ORTHO05D002001 3.5e-16 89.0 151 38.4
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 3.5e-16 89.0 151 41.1
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 5.9e-16 88.2 138 39.9
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 5.9e-16 88.2 148 37.8
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 1.0e-15 87.4 150 38.0
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 1.3e-15 87.0 148 36.5
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 5.0e-15 85.1 150 36.0
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 6.5e-15 84.7 150 36.0
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 6.5e-15 84.7 150 38.0
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 8.5e-15 84.3 156 34.6
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.5e-14 83.6 138 38.4
FAN22G1947 Fragaria x ananassa HOM05D001816 ORTHO05D002001 1.9e-14 83.2 75 60.0
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 1.9e-14 83.2 156 36.5
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 4.2e-14 82.0 133 39.8
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 5.5e-14 81.6 150 36.7
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 7.2e-14 81.3 147 36.7
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.2e-13 80.5 118 43.2
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 4.7e-13 78.6 126 43.7
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 6.1e-13 78.2 76 55.3
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 6.1e-13 78.2 127 40.2
MBI12_g22457_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 3.3e-11 72.4 119 40.3
C06p05130 Brassica napus HOM05D001816 ORTHO05D002001 4.4e-11 72.0 58 67.2
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 4.4e-11 72.0 145 35.9
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 3.7e-10 68.9 86 41.9
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 4.8e-10 68.6 151 29.1
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 8.2e-10 67.8 151 29.8
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 1.8e-09 66.6 150 30.7
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 2.4e-09 66.2 150 30.7
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 7.0e-09 64.7 127 33.1
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 4.5e-08 62.0 126 38.9
SEGI_10768 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 1.0e-07 60.8 121 32.2
Pp3c6_11150 Physcomitrium patens HOM05D001816 ORTHO05D002001 2.5e-06 56.2 158 25.3


User provided reference genes

Program Settings