Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34753H Brassica oleracea HOM05D002494 ORTHO05D002673 1.0e-47 193.0 93 100.0
C05p60980 Brassica napus HOM05D002494 ORTHO05D002673 5.4e-36 154.1 75 98.7
A05p41740 Brassica napus HOM05D002494 ORTHO05D002673 3.1e-31 138.3 75 86.7
BraA05t22893Z Brassica rapa HOM05D002494 ORTHO05D002673 3.1e-31 138.3 75 86.7
BcaC05g30043 Brassica carinata HOM05D002494 ORTHO05D002673 1.2e-30 136.3 75 85.3
Sp3g05200 Schrenkiella parvula HOM05D002494 ORTHO05D002673 4.4e-30 134.4 75 84.0
BcaC05g29801 Brassica carinata HOM05D002494 ORTHO05D002673 3.5e-27 124.8 67 88.1
A03p34620 Brassica napus HOM05D002494 ORTHO05D002673 3.5e-27 124.8 75 78.7
BraA03t12638Z Brassica rapa HOM05D002494 ORTHO05D002673 3.5e-27 124.8 75 78.7
C03p42080 Brassica napus HOM05D002494 ORTHO05D002673 4.6e-27 124.4 73 80.8
Thhalv10019892m.g Eutrema salsugineum HOM05D002494 ORTHO05D002673 4.6e-27 124.4 75 80.0
BolC3t16488H Brassica oleracea HOM05D002494 ORTHO05D002673 6.0e-27 124.0 73 80.8
BcaB03g14668 Brassica carinata HOM05D002494 ORTHO05D002673 1.3e-26 122.9 75 78.7
AT3G06290 Arabidopsis thaliana HOM05D002494 ORTHO05D002673 1.7e-26 122.5 75 78.7
Carub.0003s0571 Capsella rubella HOM05D002494 ORTHO05D002673 3.0e-26 121.7 75 77.3
CARHR080780 Cardamine hirsuta HOM05D002494 ORTHO05D002673 2.5e-25 118.6 75 77.3
AL3G17180 Arabidopsis lyrata HOM05D002494 ORTHO05D002673 3.3e-25 118.2 75 76.0
BcaC05g30040 Brassica carinata HOM05D002494 ORTHO05D002673 6.2e-24 114.0 75 73.3
Aa31LG5G16810 Aethionema arabicum HOM05D002494 ORTHO05D002673 1.7e-21 105.9 73 69.9
THA.LOC104818830 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 5.1e-18 94.4 71 64.8
Dinv38353 Davidia involucrata HOM05D002494 ORTHO05D002673 1.8e-15 85.9 71 57.7
Cpa.g.sc16.69 Carica papaya HOM05D002494 ORTHO05D002673 5.2e-15 84.3 74 52.7
CAN.G290.14 Capsicum annuum HOM05D002494 ORTHO05D002673 2.6e-14 82.0 71 56.3
Actinidia40212 Actinidia chinensis HOM05D002494 ORTHO05D002673 7.6e-14 80.5 71 53.5
Dinv44457 Davidia involucrata HOM05D002494 ORTHO05D002673 1.7e-13 79.3 71 53.5
Peaxi162Scf00592g00111 Petunia axillaris HOM05D002494 ORTHO05D002673 1.7e-13 79.3 67 56.7
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 2.2e-13 79.0 71 53.5
Nitab4.5_0001505g0010 Nicotiana tabacum HOM05D002494 ORTHO05D002673 2.9e-13 78.6 71 53.5
CSS0005255 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 4.9e-13 77.8 71 52.1
CSS0019247 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 4.9e-13 77.8 71 52.1
Cfa015542 Carpinus fangiana HOM05D002494 ORTHO05D002673 4.9e-13 77.8 70 54.3
Gohir.A09G232000 Gossypium hirsutum HOM05D002494 ORTHO05D002673 6.4e-13 77.4 75 52.0
RcHm_v2.0_Chr4g0419781 Rosa chinensis HOM05D002494 ORTHO05D002673 8.4e-13 77.0 75 50.7
Sopen12g016080 Solanum pennellii HOM05D002494 ORTHO05D002673 1.1e-12 76.6 67 53.7
Haze_01007 Corylus avellana HOM05D002494 ORTHO05D002673 1.4e-12 76.3 70 52.9
Sabra10G0012600 Salix brachista HOM05D002494 ORTHO05D002673 1.4e-12 76.3 75 52.0
Nitab4.5_0000010g0140 Nicotiana tabacum HOM05D002494 ORTHO05D002673 1.9e-12 75.9 71 50.7
Potri.010G028200 Populus trichocarpa HOM05D002494 ORTHO05D002673 1.9e-12 75.9 75 52.0
Rhsim04G0212900 Rhododendron simsii HOM05D002494 ORTHO05D002673 1.9e-12 75.9 71 49.3
CSS0038359 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 2.4e-12 75.5 71 50.7
DCAR_027134 Daucus carota HOM05D002494 ORTHO05D002673 2.4e-12 75.5 81 48.1
Prupe.1G147400 Prunus persica HOM05D002494 ORTHO05D002673 2.4e-12 75.5 71 47.9
CiPaw.02G089600 Carya illinoinensis HOM05D002494 ORTHO05D002673 3.2e-12 75.1 70 52.9
EL10As5g23527 Beta vulgaris HOM05D002494 ORTHO05D002673 7.1e-12 73.9 67 52.2
FAN22G2205 Fragaria x ananassa HOM05D002494 ORTHO05D002673 7.1e-12 73.9 71 50.7
arahy.Tifrunner.gnm1.ann1.2UVC2V Arachis hypogaea HOM05D002494 ORTHO05D002673 9.3e-12 73.6 70 52.9
Gohir.D09G233100 Gossypium hirsutum HOM05D002494 ORTHO05D002673 9.3e-12 73.6 66 56.1
Gorai.006G256000 Gossypium raimondii HOM05D002494 ORTHO05D002673 9.3e-12 73.6 66 56.1
MD16G1179800 Malus domestica HOM05D002494 ORTHO05D002673 9.3e-12 73.6 75 48.0
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 9.3e-12 73.6 66 54.5
AUR62024657 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.2e-11 73.2 67 53.7
FvH4_4g13920 Fragaria vesca HOM05D002494 ORTHO05D002673 1.2e-11 73.2 75 49.3
FAN12G0871 Fragaria x ananassa HOM05D002494 ORTHO05D002673 1.2e-11 73.2 75 49.3
MD13G1178600 Malus domestica HOM05D002494 ORTHO05D002673 1.2e-11 73.2 75 46.7
unitig_748.g8564 Utricularia gibba HOM05D002494 ORTHO05D002673 1.2e-11 73.2 68 48.5
Atru.chr4.2700 Acer truncatum HOM05D002494 ORTHO05D002673 1.6e-11 72.8 67 53.7
AUR62011813 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.6e-11 72.8 67 55.2
Cc03_g02770 Coffea canephora HOM05D002494 ORTHO05D002673 1.6e-11 72.8 67 49.3
SalBow2G0767 Salvia bowleyana HOM05D002494 ORTHO05D002673 1.6e-11 72.8 78 47.4
TAR365G0297 Trochodendron aralioides HOM05D002494 ORTHO05D002673 1.6e-11 72.8 67 50.7
Nn3g21175 Nelumbo nucifera HOM05D002494 ORTHO05D002673 2.1e-11 72.4 71 46.5
arahy.Tifrunner.gnm1.ann1.I64MY8 Arachis hypogaea HOM05D002494 ORTHO05D002673 2.7e-11 72.0 70 51.4
Duzib212G0707 Durio zibethinus HOM05D002494 ORTHO05D002673 2.7e-11 72.0 66 53.0
FAN17G1311 Fragaria x ananassa HOM05D002494 ORTHO05D002673 2.7e-11 72.0 71 50.7
vmacro08242 Vaccinium macrocarpon HOM05D002494 ORTHO05D002673 2.7e-11 72.0 71 47.9
Actinidia23457 Actinidia chinensis HOM05D002494 ORTHO05D002673 4.6e-11 71.2 71 52.1
Migut.G00286 Erythranthe guttata HOM05D002494 ORTHO05D002673 4.6e-11 71.2 81 44.4
Manes.03G187900 Manihot esculenta HOM05D002494 ORTHO05D002673 4.6e-11 71.2 64 53.1
Oeu032696.1 Olea europaea HOM05D002494 ORTHO05D002673 4.6e-11 71.2 77 45.5
Psat1g185440 Pisum sativum HOM05D002494 ORTHO05D002673 6.0e-11 70.9 71 47.9
Eucgr.H03640 Eucalyptus grandis HOM05D002494 ORTHO05D002673 7.8e-11 70.5 70 48.6
Ah.02g112310 Amaranthus hybridus HOM05D002494 ORTHO05D002673 1.0e-10 70.1 66 50.0
Hund09628 Selenicereus undatus HOM05D002494 ORTHO05D002673 1.0e-10 70.1 71 50.7
COL.COLO4_13973 Corchorus olitorius HOM05D002494 ORTHO05D002673 1.3e-10 69.7 66 53.0
Phvul.006G158000 Phaseolus vulgaris HOM05D002494 ORTHO05D002673 1.3e-10 69.7 66 53.0
MSTRG.3973 Avicennia marina HOM05D002494 ORTHO05D002673 1.7e-10 69.3 69 47.8
Lj6C665T16 Lonicera japonica HOM05D002494 ORTHO05D002673 1.7e-10 69.3 74 45.9
SGA_v2.0_scaffold237G43852 Striga asiatica HOM05D002494 ORTHO05D002673 1.7e-10 69.3 71 45.1
Aqoxy2G03189 Aquilegia oxysepala HOM05D002494 ORTHO05D002673 5.1e-10 67.8 70 47.1
Sed0003410 Sechium edule HOM05D002494 ORTHO05D002673 5.1e-10 67.8 71 47.9
Sc13g0003790 Simmondsia chinensis HOM05D002494 ORTHO05D002673 5.1e-10 67.8 90 41.1
Ciclev10004135m.g Citrus clementina HOM05D002494 ORTHO05D002673 6.6e-10 67.4 70 48.6
MELO3C006582.2 Cucumis melo HOM05D002494 ORTHO05D002673 6.6e-10 67.4 71 49.3
Lalb_Chr15g0087191 Lupinus albus HOM05D002494 ORTHO05D002673 6.6e-10 67.4 69 44.9
VMungo0540G1417 Vigna mungo HOM05D002494 ORTHO05D002673 1.1e-09 66.6 69 49.3
TPR.G18023 Trifolium pratense HOM05D002494 ORTHO05D002673 3.3e-09 65.1 66 47.0
Ca_00591_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 5.6e-09 64.3 66 45.5
Medtr2g020960 Medicago truncatula HOM05D002494 ORTHO05D002673 5.6e-09 64.3 67 50.7
CANSAT78G1223 Cannabis sativa HOM05D002494 ORTHO05D002673 1.3e-08 63.2 71 45.1
SHI00347 Sapria himalayana HOM05D002494 ORTHO05D002673 1.3e-08 63.2 70 42.9
ClCG05G005560 Citrullus lanatus HOM05D002494 ORTHO05D002673 1.6e-08 62.8 71 46.5
CsaV3_3G013900 Cucumis sativus L. HOM05D002494 ORTHO05D002673 1.6e-08 62.8 71 46.5
PSO170G5860 Papaver somniferum HOM05D002494 ORTHO05D002673 2.8e-08 62.0 66 42.4
ATR0626G271 Amborella trichopoda HOM05D002494 ORTHO05D002673 8.1e-08 60.5 67 44.8
Glyma.13G211900 Glycine max HOM05D002494 ORTHO05D002673 1.1e-07 60.1 69 44.9
ECA233G5784 Erigeron canadensis HOM05D002494 ORTHO05D002673 1.8e-07 59.3 65 43.1
Glyma.15G100800 Glycine max HOM05D002494 ORTHO05D002673 4.0e-07 58.2 64 46.9
Zm00001eb329310 Zea mays HOM05D002494 ORTHO05D002673 4.0e-07 58.2 72 38.9
Zm00001eb329350 Zea mays HOM05D002494 ORTHO05D002673 4.0e-07 58.2 72 38.9
HanXRQChr09g0251551 Helianthus annuus HOM05D002494 ORTHO05D002673 5.3e-07 57.8 78 43.6
Zm00001eb329290 Zea mays HOM05D002494 ORTHO05D002673 5.3e-07 57.8 72 38.9
BcaB03g14660 Brassica carinata HOM05D002494 ORTHO05D002673 1.5e-06 56.2 33 75.8
Lj6g0008158 Lotus japonicus HOM05D002494 ORTHO05D002673 1.5e-06 56.2 70 41.4
Zm00001eb329320 Zea mays HOM05D002494 ORTHO05D002673 5.8e-06 54.3 72 37.5
HPP92_013672 Vanilla planifolia HOM05D002494 ORTHO05D002673 9.9e-06 53.5 59 44.1


User provided reference genes

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