Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 1.4e-139 499.6 250 100.0
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 4.1e-139 498.0 250 99.6
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 1.6e-138 496.1 250 99.2
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 4.5e-138 494.6 250 98.8
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 5.5e-136 487.6 257 96.1
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 2.0e-122 442.6 250 88.0
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 3.3e-120 435.3 250 86.8
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 1.7e-116 422.9 250 82.8
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 2.3e-113 412.5 250 80.0
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 3.9e-113 411.8 250 80.0
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 3.3e-112 408.7 250 80.0
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 3.3e-104 382.1 237 76.4
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 2.1e-95 352.8 251 68.9
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 1.1e-83 313.9 249 61.4
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 1.5e-80 303.5 248 59.7
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 2.8e-79 299.3 253 58.1
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 3.6e-79 298.9 248 58.5
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 4.8e-79 298.5 248 58.1
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 6.2e-79 298.1 248 58.1
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 1.1e-78 297.4 249 56.2
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 1.8e-78 296.6 248 56.9
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 3.1e-78 295.8 247 57.1
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 1.2e-77 293.9 249 56.2
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 3.8e-76 288.9 247 57.1
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 8.4e-76 287.7 248 56.0
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 8.4e-76 287.7 248 56.0
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 1.1e-75 287.3 255 54.9
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 3.2e-75 285.8 248 56.0
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 3.2e-75 285.8 267 52.8
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 4.6e-74 282.0 252 55.6
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 4.6e-74 282.0 252 55.6
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 4.6e-74 282.0 253 54.9
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 7.9e-74 281.2 246 55.7
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 1.3e-73 280.4 255 53.3
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 1.8e-73 280.0 253 54.2
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 3.0e-73 279.3 248 56.5
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 5.1e-73 278.5 255 56.1
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 3.3e-72 275.8 247 54.7
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 5.6e-72 275.0 250 54.0
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 5.6e-72 275.0 245 54.7
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 7.4e-72 274.6 216 58.8
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 9.6e-72 274.2 253 53.0
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 9.6e-72 274.2 240 58.8
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 9.6e-72 274.2 249 53.8
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 9.6e-72 274.2 249 53.8
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 3.6e-71 272.3 248 52.4
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 4.8e-71 271.9 242 53.3
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 4.8e-71 271.9 253 53.4
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 4.8e-71 271.9 248 52.8
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 8.1e-71 271.2 221 61.1
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 2.4e-70 269.6 249 52.2
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 2.4e-70 269.6 249 52.6
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 3.1e-70 269.2 247 52.2
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 4.0e-70 268.9 243 55.6
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 6.9e-70 268.1 246 51.6
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 9.0e-70 267.7 246 53.3
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 1.5e-69 266.9 247 51.0
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 2.0e-69 266.5 247 50.2
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 2.6e-69 266.2 256 52.0
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 5.8e-69 265.0 253 51.8
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 5.8e-69 265.0 248 52.8
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 2.9e-68 262.7 254 52.0
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 8.4e-68 261.2 318 43.7
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 2.4e-67 259.6 252 51.2
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 3.2e-67 259.2 248 51.6
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 3.2e-67 259.2 248 51.6
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 4.2e-67 258.8 247 53.4
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 4.2e-67 258.8 252 53.2
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 2.1e-66 256.5 251 51.0
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 4.6e-66 255.4 250 52.8
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 6.7e-65 251.5 256 53.1
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 8.7e-65 251.1 250 51.6
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.1e-64 250.8 207 56.5
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 1.5e-64 250.4 247 52.2
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 1.5e-64 250.4 204 57.4
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 2.5e-64 249.6 245 50.2
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 4.3e-64 248.8 249 52.2
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 3.7e-63 245.7 214 55.1
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 6.2e-63 245.0 253 46.6
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 1.4e-62 243.8 254 52.0
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 3.1e-62 242.7 252 49.2
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 4.0e-62 242.3 248 48.8
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 4.0e-62 242.3 251 51.0
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 6.9e-62 241.5 247 49.8
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 9.0e-62 241.1 247 49.4
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 9.0e-62 241.1 240 49.2
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.5e-61 240.4 254 52.0
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 3.4e-61 239.2 249 48.6
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 8.4e-60 234.6 201 54.2
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 1.0e-57 227.6 187 62.0
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.8e-57 226.9 181 57.5
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 2.1e-55 219.9 211 50.7
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 4.8e-55 218.8 202 53.5
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 9.0e-54 214.5 294 40.8
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 3.8e-52 209.1 240 47.9
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 2.5e-48 196.4 248 44.8
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 2.8e-47 193.0 182 54.4
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 8.5e-44 181.4 183 51.4
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 3.6e-42 176.0 248 35.9
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 2.8e-39 166.4 246 34.6
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 1.1e-38 164.5 197 41.1
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 5.9e-37 158.7 123 58.5
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 5.9e-37 158.7 143 53.8
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 4.2e-35 152.5 121 58.7
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 4.4e-32 142.5 218 32.6
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 2.8e-31 139.8 126 55.6
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 2.8e-31 139.8 156 49.4
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 1.8e-30 137.1 204 37.7
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 1.6e-29 134.0 130 50.8
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 2.6e-29 133.3 128 51.6
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.2e-28 130.2 175 40.0
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 4.4e-24 115.9 142 45.8
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 7.2e-19 98.6 120 41.7
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.4e-17 94.4 98 46.9
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 4.4e-16 89.4 120 39.2
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 3.1e-14 83.2 109 39.4
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 1.2e-13 81.3 203 29.1
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 1.2e-08 64.7 50 50.0
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 8.3e-07 58.5 83 38.6
Haze_09394 Corylus avellana HOM05D006561 ORTHO05D165302 7.0e-06 55.5 39 61.5


User provided reference genes

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