Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33702H Brassica oleracea HOM05D002313 ORTHO05D013244 1.7e-23 111.7 53 100.0
BcaC05g25254 Brassica carinata HOM05D002313 ORTHO05D013244 9.6e-22 105.9 52 96.2
BolC5t29886H Brassica oleracea HOM05D002313 ORTHO05D013244 6.2e-21 103.2 52 94.2
A01p22440 Brassica napus HOM05D002313 ORTHO05D013244 1.4e-20 102.1 52 90.4
BraA01t02161Z Brassica rapa HOM05D002313 ORTHO05D013244 2.3e-15 84.7 52 76.9
BcaNung07385 Brassica carinata HOM05D002313 ORTHO05D013244 2.5e-14 81.3 40 95.0
BcaB02g09601 Brassica carinata HOM05D002313 ORTHO05D003747 1.1e-12 75.9 44 77.3
Thhalv10003594m.g Eutrema salsugineum HOM05D002313 ORTHO05D003747 6.9e-12 73.2 44 77.3
BcaB07g29821 Brassica carinata HOM05D002313 ORTHO05D003747 1.5e-11 72.0 44 75.0
BcaC01g02429 Brassica carinata HOM05D002313 ORTHO05D003747 1.5e-11 72.0 44 75.0
A06p28430 Brassica napus HOM05D002313 ORTHO05D003747 1.5e-11 72.0 44 75.0
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 1.5e-11 72.0 44 75.0
C03p65380 Brassica napus HOM05D002313 ORTHO05D003747 1.5e-11 72.0 44 75.0
BraA06t25787Z Brassica rapa HOM05D002313 ORTHO05D003747 1.5e-11 72.0 44 75.0
Thhalv10012565m.g Eutrema salsugineum HOM05D002313 ORTHO05D003747 1.5e-11 72.0 44 77.3
Sp2g24980 Schrenkiella parvula HOM05D002313 ORTHO05D003747 1.5e-11 72.0 44 75.0
CARHR275540 Cardamine hirsuta HOM05D002313 ORTHO05D003747 2.0e-11 71.6 44 75.0
AT5G61780 Arabidopsis thaliana HOM05D002313 ORTHO05D003747 3.4e-11 70.9 44 75.0
Aa31LG11G1700 Aethionema arabicum HOM05D002313 ORTHO05D003747 4.5e-11 70.5 44 72.7
BcaB01g06036 Brassica carinata HOM05D002313 ORTHO05D003747 4.5e-11 70.5 44 77.3
A03p03230 Brassica napus HOM05D002313 ORTHO05D003747 4.5e-11 70.5 44 77.3
C03p03640 Brassica napus HOM05D002313 ORTHO05D003747 4.5e-11 70.5 44 77.3
BolC3t12903H Brassica oleracea HOM05D002313 ORTHO05D003747 4.5e-11 70.5 44 77.3
BraA03t09676Z Brassica rapa HOM05D002313 ORTHO05D003747 4.5e-11 70.5 44 77.3
CARHR205800 Cardamine hirsuta HOM05D002313 ORTHO05D003747 4.5e-11 70.5 44 75.0
AL8G38540 Arabidopsis lyrata HOM05D002313 ORTHO05D003747 5.8e-11 70.1 44 75.0
Lsat_1_v5_gn_1_29960 Lactuca sativa HOM05D002313 ORTHO05D003747 5.8e-11 70.1 49 65.3
AL6G17650 Arabidopsis lyrata HOM05D002313 ORTHO05D003747 7.6e-11 69.7 44 75.0
AT5G07350 Arabidopsis thaliana HOM05D002313 ORTHO05D003747 7.6e-11 69.7 44 75.0
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 7.6e-11 69.7 40 80.0
BolC2t12219H Brassica oleracea HOM05D002313 ORTHO05D003747 7.6e-11 69.7 40 80.0
BolC2t12221H Brassica oleracea HOM05D002313 ORTHO05D003747 7.6e-11 69.7 40 80.0
CSS0013451 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D003747 7.6e-11 69.7 44 72.7
Carub.0006s0632 Capsella rubella HOM05D002313 ORTHO05D003747 7.6e-11 69.7 44 72.7
Aa31LG3G19020 Aethionema arabicum HOM05D002313 ORTHO05D003747 9.9e-11 69.3 44 75.0
BcaB05g21620 Brassica carinata HOM05D002313 ORTHO05D003747 9.9e-11 69.3 44 75.0
BcaC03g13188 Brassica carinata HOM05D002313 ORTHO05D003747 9.9e-11 69.3 44 75.0
C02p03090 Brassica napus HOM05D002313 ORTHO05D003747 9.9e-11 69.3 44 75.0
BolC2t06270H Brassica oleracea HOM05D002313 ORTHO05D003747 9.9e-11 69.3 44 75.0
BraA02t04914Z Brassica rapa HOM05D002313 ORTHO05D003747 9.9e-11 69.3 44 75.0
Sp6g35530 Schrenkiella parvula HOM05D002313 ORTHO05D003747 9.9e-11 69.3 44 70.5
THA.LOC104801730 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 9.9e-11 69.3 42 73.8
THA.LOC104819420 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 9.9e-11 69.3 42 73.8
SalBow1G2272 Salvia bowleyana HOM05D002313 ORTHO05D003747 1.3e-10 68.9 49 65.3
MSTRG.9381 Avicennia marina HOM05D002313 ORTHO05D003747 2.2e-10 68.2 47 66.0
BcaC03g18096 Brassica carinata HOM05D002313 ORTHO05D003747 2.2e-10 68.2 40 77.5
Potri.012G111200 Populus trichocarpa HOM05D002313 ORTHO05D003747 2.2e-10 68.2 44 70.5
Sabra12G0081000 Salix brachista HOM05D002313 ORTHO05D003747 2.2e-10 68.2 44 70.5
Prupe.5G139000 Prunus persica HOM05D002313 ORTHO05D003747 2.9e-10 67.8 44 68.2
TAR622G1219 Trochodendron aralioides HOM05D002313 ORTHO05D003747 2.9e-10 67.8 42 71.4
Gohir.D11G042400 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.8e-10 67.4 47 61.7
Gorai.007G045600 Gossypium raimondii HOM05D002313 ORTHO05D003747 3.8e-10 67.4 47 61.7
Manes.14G043200 Manihot esculenta HOM05D002313 ORTHO05D003747 3.8e-10 67.4 47 66.0
CAN.G1008.40 Capsicum annuum HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
CDE05G2049 Ceratophyllum demersum HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
Dinv13697 Davidia involucrata HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
Nn3g16203 Nelumbo nucifera HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
Nitab4.5_0000976g0220 Nicotiana tabacum HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
Nitab4.5_0011883g0030 Nicotiana tabacum HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
Solyc03g118010.4 Solanum lycopersicum HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
Sopen03g036910 Solanum pennellii HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
GSVIVG01005677001 Vitis vinifera HOM05D002313 ORTHO05D003747 4.9e-10 67.0 42 71.4
AUR62017463 Chenopodium quinoa HOM05D002313 ORTHO05D003747 6.4e-10 66.6 42 69.0
COL.COLO4_37280 Corchorus olitorius HOM05D002313 ORTHO05D003747 6.4e-10 66.6 47 61.7
MBI07_g42015_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D003747 6.4e-10 66.6 44 68.2
Rhsim08G0199800 Rhododendron simsii HOM05D002313 ORTHO05D003747 6.4e-10 66.6 44 70.5
Dinv23243 Davidia involucrata HOM05D002313 ORTHO05D003747 8.4e-10 66.2 40 75.0
Gohir.A11G039100 Gossypium hirsutum HOM05D002313 ORTHO05D003747 8.4e-10 66.2 44 63.6
Gohir.A12G194700 Gossypium hirsutum HOM05D002313 ORTHO05D003747 8.4e-10 66.2 45 62.2
Lj9C488T17 Lonicera japonica HOM05D002313 ORTHO05D003747 8.4e-10 66.2 42 71.4
Oeu060107.2 Olea europaea HOM05D002313 ORTHO05D003747 8.4e-10 66.2 47 63.8
TWI23G0679 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 8.4e-10 66.2 42 69.0
Aqoxy3G01983 Aquilegia oxysepala HOM05D002313 ORTHO05D003747 1.1e-09 65.9 44 68.2
Duzib205G0651 Durio zibethinus HOM05D002313 ORTHO05D003747 1.1e-09 65.9 47 61.7
MD00G1076400 Malus domestica HOM05D002313 ORTHO05D003747 1.1e-09 65.9 42 69.0
MD14G1144600 Malus domestica HOM05D002313 ORTHO05D003747 1.1e-09 65.9 42 69.0
Rhsim12G0182300 Rhododendron simsii HOM05D002313 ORTHO05D003747 1.1e-09 65.9 44 68.2
Solyc03g118020.3 Solanum lycopersicum HOM05D002313 ORTHO05D003747 1.1e-09 65.9 42 69.0
Sopen03g036920 Solanum pennellii HOM05D002313 ORTHO05D003747 1.1e-09 65.9 42 69.0
PGSC0003DMG400014229 Solanum tuberosum HOM05D002313 ORTHO05D003747 1.1e-09 65.9 42 69.0
MSTRG.4649 Avicennia marina HOM05D002313 ORTHO05D003747 1.4e-09 65.5 47 63.8
CANSAT56G3711 Cannabis sativa HOM05D002313 ORTHO05D003747 1.4e-09 65.5 47 61.7
Manes.06G128300 Manihot esculenta HOM05D002313 ORTHO05D003747 1.4e-09 65.5 47 63.8
Potri.015G109300 Populus trichocarpa HOM05D002313 ORTHO05D003747 1.4e-09 65.5 42 69.0
Sabra15G0131500 Salix brachista HOM05D002313 ORTHO05D003747 1.4e-09 65.5 42 71.4
TWI39G1002 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 1.4e-09 65.5 42 69.0
AUR62032532 Chenopodium quinoa HOM05D002313 ORTHO05D003747 1.9e-09 65.1 42 66.7
MBI11_g17277_MAGBIO Magnolia biondii HOM05D002313 ORTHO05D003747 1.9e-09 65.1 44 65.9
Nitab4.5_0004781g0060 Nicotiana tabacum HOM05D002313 ORTHO05D003747 1.9e-09 65.1 42 66.7
PSO017G3625 Papaver somniferum HOM05D002313 ORTHO05D003747 1.9e-09 65.1 42 69.0
PSO478G1808 Papaver somniferum HOM05D002313 ORTHO05D003747 1.9e-09 65.1 42 69.0
QL10p000004 Quercus lobata HOM05D002313 ORTHO05D003747 1.9e-09 65.1 44 65.9
QL10p000189 Quercus lobata HOM05D002313 ORTHO05D003747 1.9e-09 65.1 44 65.9
Thecc.03G143000 Theobroma cacao HOM05D002313 ORTHO05D003747 1.9e-09 65.1 47 59.6
Actinidia25504 Actinidia chinensis HOM05D002313 ORTHO05D003747 2.4e-09 64.7 44 65.9
ATR0582G099 Amborella trichopoda HOM05D002313 ORTHO05D003747 2.4e-09 64.7 47 61.7
Migut.D01169 Erythranthe guttata HOM05D002313 ORTHO05D003747 2.4e-09 64.7 49 61.2
Oeu013668.4 Olea europaea HOM05D002313 ORTHO05D003747 2.4e-09 64.7 42 66.7
RcHm_v2.0_Chr7g0188331 Rosa chinensis HOM05D002313 ORTHO05D003747 2.4e-09 64.7 42 69.0
Atru.chr6.1949 Acer truncatum HOM05D002313 ORTHO05D003747 3.2e-09 64.3 42 66.7
DCAR_025630 Daucus carota HOM05D002313 ORTHO05D003747 3.2e-09 64.3 44 63.6
Duzib084G0519 Durio zibethinus HOM05D002313 ORTHO05D003747 3.2e-09 64.3 42 66.7
ECA232G1330 Erigeron canadensis HOM05D002313 ORTHO05D003747 3.2e-09 64.3 42 64.3
FAN08G2499 Fragaria x ananassa HOM05D002313 ORTHO05D003747 3.2e-09 64.3 42 66.7
Gohir.D12G197100 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.2e-09 64.3 45 60.0
Gorai.008G211700 Gossypium raimondii HOM05D002313 ORTHO05D003747 3.2e-09 64.3 45 60.0
PGR004G0406 Punica granatum HOM05D002313 ORTHO05D003747 3.2e-09 64.3 40 72.5
vmacro16771 Vaccinium macrocarpon HOM05D002313 ORTHO05D003747 3.2e-09 64.3 44 65.9
vmacro19101 Vaccinium macrocarpon HOM05D002313 ORTHO05D003747 3.2e-09 64.3 44 65.9
Actinidia08918 Actinidia chinensis HOM05D002313 ORTHO05D003747 4.2e-09 63.9 44 63.6
BolC5t30661H Brassica oleracea HOM05D002313 ORTHO05D013244 4.2e-09 63.9 34 85.3
Ciclev10030606m.g Citrus clementina HOM05D002313 ORTHO05D003747 4.2e-09 63.9 47 61.7
CSS0049140 Camellia sinensis var. sinensis HOM05D002313 ORTHO05D003747 5.5e-09 63.5 44 63.6
CiPaw.11G000500 Carya illinoinensis HOM05D002313 ORTHO05D003747 5.5e-09 63.5 42 66.7
CsaV3_1G000020 Cucumis sativus L. HOM05D002313 ORTHO05D003747 5.5e-09 63.5 44 61.4
Gohir.A03G055400 Gossypium hirsutum HOM05D002313 ORTHO05D003747 5.5e-09 63.5 44 56.8
Gorai.003G117700 Gossypium raimondii HOM05D002313 ORTHO05D003747 5.5e-09 63.5 44 56.8
Peaxi162Scf00314g00724 Petunia axillaris HOM05D002313 ORTHO05D003747 5.5e-09 63.5 44 63.6
SGA_v2.0_scaffold40G15690 Striga asiatica HOM05D002313 ORTHO05D003747 5.5e-09 63.5 47 61.7
TWI14G0055 Tripterygium wilfordii HOM05D002313 ORTHO05D003747 5.5e-09 63.5 44 63.6
FAN04G2635 Fragaria x ananassa HOM05D002313 ORTHO05D003747 7.1e-09 63.2 42 64.3
Hma1.2p1_1333F.1_g276220 Hydrangea macrophylla HOM05D002313 ORTHO05D003747 7.1e-09 63.2 44 61.4
Cpa.g.sc13.196 Carica papaya HOM05D002313 ORTHO05D003747 9.3e-09 62.8 42 64.3
FvH4_5g09960 Fragaria vesca HOM05D002313 ORTHO05D003747 9.3e-09 62.8 42 64.3
FAN18G4031 Fragaria x ananassa HOM05D002313 ORTHO05D003747 9.3e-09 62.8 42 64.3
Peaxi162Scf00835g00334 Petunia axillaris HOM05D002313 ORTHO05D003747 9.3e-09 62.8 42 61.9
Aqoxy5G02974 Aquilegia oxysepala HOM05D002313 ORTHO05D003747 1.2e-08 62.4 41 63.4
HanXRQChr16g0499321 Helianthus annuus HOM05D002313 ORTHO05D003747 1.2e-08 62.4 42 61.9
Sed0026881 Sechium edule HOM05D002313 ORTHO05D003747 1.2e-08 62.4 44 59.1
Actinidia18283 Actinidia chinensis HOM05D002313 ORTHO05D013935 1.6e-08 62.0 40 72.5
Ah.02g128720 Amaranthus hybridus HOM05D002313 ORTHO05D003747 1.6e-08 62.0 41 63.4
Os02g0523500 Oryza sativa ssp. japonica HOM05D002313 ORTHO05D003747 1.6e-08 62.0 41 68.3
ClCG06G018430 Citrullus lanatus HOM05D002313 ORTHO05D003747 2.1e-08 61.6 44 59.1
MELO3C026154.2 Cucumis melo HOM05D002313 ORTHO05D003747 2.1e-08 61.6 44 59.1
Sed0025222 Sechium edule HOM05D002313 ORTHO05D003747 2.1e-08 61.6 44 59.1
HanXRQChr09g0274371 Helianthus annuus HOM05D002313 ORTHO05D003747 2.7e-08 61.2 42 61.9
Lsat_1_v5_gn_4_85420 Lactuca sativa HOM05D002313 ORTHO05D003747 2.7e-08 61.2 42 59.5
arahy.Tifrunner.gnm1.ann1.GTN7VM Arachis hypogaea HOM05D002313 ORTHO05D003747 3.5e-08 60.8 42 61.9
Gohir.D03G111200 Gossypium hirsutum HOM05D002313 ORTHO05D003747 3.5e-08 60.8 44 54.5
arahy.Tifrunner.gnm1.ann1.K1HEP6 Arachis hypogaea HOM05D002313 ORTHO05D003747 4.6e-08 60.5 42 59.5
CiPaw.12G000200 Carya illinoinensis HOM05D002313 ORTHO05D003747 4.6e-08 60.5 42 66.7
Lalb_Chr08g0237631 Lupinus albus HOM05D002313 ORTHO05D003747 6.0e-08 60.1 42 61.9
GSVIVG01032946001 Vitis vinifera HOM05D002313 ORTHO05D003747 6.0e-08 60.1 42 61.9
Zm00001eb242260 Zea mays HOM05D002313 ORTHO05D003747 6.0e-08 60.1 47 61.7
Cc04_g05640 Coffea canephora HOM05D002313 ORTHO05D003747 7.9e-08 59.7 40 65.0
Phvul.009G159000 Phaseolus vulgaris HOM05D002313 ORTHO05D003747 7.9e-08 59.7 42 59.5
unitig_736.g22833 Utricularia gibba HOM05D002313 ORTHO05D003747 1.0e-07 59.3 42 59.5
Glyma.04G203000 Glycine max HOM05D002313 ORTHO05D003747 1.3e-07 58.9 45 57.8
Glyma.06G162500 Glycine max HOM05D002313 ORTHO05D003747 1.3e-07 58.9 45 57.8
Medtr3g098420 Medicago truncatula HOM05D002313 ORTHO05D003747 1.3e-07 58.9 42 61.9
unitig_899.g14825 Utricularia gibba HOM05D002313 ORTHO05D003747 1.3e-07 58.9 42 61.9
VMungo1309G1375 Vigna mungo HOM05D002313 ORTHO05D003747 1.3e-07 58.9 42 61.9
EL10Ac6g13909 Beta vulgaris HOM05D002313 ORTHO05D003747 1.8e-07 58.5 39 66.7
Lalb_Chr23g0272841 Lupinus albus HOM05D002313 ORTHO05D003747 2.3e-07 58.2 42 57.1
Lalb_Chr11g0068981 Lupinus albus HOM05D002313 ORTHO05D003747 3.9e-07 57.4 42 57.1
Lalb_Chr11g0069041 Lupinus albus HOM05D002313 ORTHO05D003747 3.9e-07 57.4 42 57.1
Psat0s836g0080 Pisum sativum HOM05D002313 ORTHO05D013244 3.9e-07 57.4 42 59.5
Hund04139 Selenicereus undatus HOM05D002313 ORTHO05D003747 3.9e-07 57.4 39 61.5
Eucgr.K02185 Eucalyptus grandis HOM05D002313 ORTHO05D003747 5.1e-07 57.0 42 57.1
Sc03g0005410 Simmondsia chinensis HOM05D002313 ORTHO05D003747 5.1e-07 57.0 37 64.9
HPP92_007020 Vanilla planifolia HOM05D002313 ORTHO05D003747 5.1e-07 57.0 43 62.8
Zm00001eb180670 Zea mays HOM05D002313 ORTHO05D003747 5.1e-07 57.0 38 65.8
arahy.Tifrunner.gnm1.ann1.039TZW Arachis hypogaea HOM05D002313 ORTHO05D003747 8.7e-07 56.2 42 54.8
VMungo0251G2525 Vigna mungo HOM05D002313 ORTHO05D003747 1.1e-06 55.8 45 57.8
SEGI_32934 Sequoiadendron giganteum HOM05D002313 ORTHO05D003747 1.5e-06 55.5 33 72.7
TPR.G16949 Trifolium pratense HOM05D002313 ORTHO05D003747 1.9e-06 55.1 41 58.5
Ca_17048_v3 Cicer arietinum L. HOM05D002313 ORTHO05D003747 2.5e-06 54.7 42 54.8
Glyma.08G006400 Glycine max HOM05D002313 ORTHO05D003747 4.3e-06 53.9 45 51.1
Phvul.002G280100 Phaseolus vulgaris HOM05D002313 ORTHO05D003747 5.6e-06 53.5 45 55.6
THA.LOC104818290 Tarenaya hassleriana HOM05D002313 ORTHO05D003747 5.6e-06 53.5 36 61.1
DCAR_016328 Daucus carota HOM05D002313 ORTHO05D007157 9.6e-06 52.8 47 48.9
Glyma.05G199100 Glycine max HOM05D002313 ORTHO05D003747 9.6e-06 52.8 45 51.1


User provided reference genes

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