Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29667H Brassica oleracea HOM05D000347 ORTHO05D001997 7.4e-29 129.8 63 100.0
BolC7t46506H Brassica oleracea HOM05D005331 ORTHO05D007596 6.5e-25 116.7 58 96.6
C07p60770 Brassica napus HOM05D005331 ORTHO05D007596 7.9e-23 109.8 60 86.7
BcaB01g04481 Brassica carinata HOM05D000347 ORTHO05D001997 1.8e-22 108.6 52 98.1
BcaB01g04548 Brassica carinata HOM05D000347 ORTHO05D001997 1.8e-22 108.6 52 98.1
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.8e-22 108.6 52 98.1
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.8e-22 108.6 52 98.1
BolC1t01087H Brassica oleracea HOM05D000347 ORTHO05D007596 1.8e-22 108.6 52 98.1
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.8e-22 108.6 52 98.1
BolC3t19323H Brassica oleracea HOM05D000347 ORTHO05D001997 1.8e-22 108.6 52 98.1
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.8e-22 108.6 52 98.1
AL8G34330 Arabidopsis lyrata HOM05D000347 ORTHO05D001997 6.7e-22 106.7 52 94.2
Carub.0008s1877 Capsella rubella HOM05D000347 ORTHO05D001997 6.7e-22 106.7 52 94.2
CARHR272030 Cardamine hirsuta HOM05D000347 ORTHO05D001997 6.7e-22 106.7 52 94.2
Sp6g19890 Schrenkiella parvula HOM05D000347 ORTHO05D001997 6.7e-22 106.7 52 94.2
Aa31LG11G20 Aethionema arabicum HOM05D000347 ORTHO05D001997 1.9e-21 105.1 52 92.3
Thhalv10013638m.g Eutrema salsugineum HOM05D000347 ORTHO05D001997 1.9e-21 105.1 52 92.3
AT5G58230 Arabidopsis thaliana HOM05D000347 ORTHO05D001997 2.5e-21 104.8 52 92.3
C05p11090 Brassica napus HOM05D005331 ORTHO05D007596 2.5e-21 104.8 53 94.3
BcaC04g19901 Brassica carinata HOM05D000347 ORTHO05D001997 3.3e-21 104.4 52 92.3
THA.LOC104826753 Tarenaya hassleriana HOM05D000347 ORTHO05D001997 3.3e-21 104.4 52 92.3
THA.LOC104809915 Tarenaya hassleriana HOM05D000347 ORTHO05D001997 5.7e-21 103.6 52 90.4
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.3e-20 102.4 52 88.5
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 1.3e-20 102.4 52 90.4
BolC9t57860H Brassica oleracea HOM05D000347 ORTHO05D001997 1.3e-20 102.4 52 90.4
BraA10t43626Z Brassica rapa HOM05D000347 ORTHO05D001997 1.3e-20 102.4 52 88.5
SalBow5G1135 Salvia bowleyana HOM05D000347 ORTHO05D001997 1.8e-19 98.6 52 84.6
SGA_v2.0_scaffold110G31280 Striga asiatica HOM05D000347 ORTHO05D001997 1.8e-19 98.6 52 84.6
unitig_52.g17434 Utricularia gibba HOM05D000347 ORTHO05D001997 1.8e-19 98.6 52 86.5
BcaB01g04544 Brassica carinata HOM05D000347 ORTHO05D001997 2.4e-19 98.2 52 86.5
BcaC04g19898 Brassica carinata HOM05D000347 ORTHO05D001997 2.4e-19 98.2 52 86.5
CSS0023650 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 2.4e-19 98.2 55 78.2
Atru.chr11.1239 Acer truncatum HOM05D000347 ORTHO05D001997 3.1e-19 97.8 52 82.7
CDE03G0403 Ceratophyllum demersum HOM05D000347 ORTHO05D001997 3.1e-19 97.8 52 84.6
Ciclev10020286m.g Citrus clementina HOM05D000347 ORTHO05D001997 3.1e-19 97.8 52 82.7
MSTRG.5240 Avicennia marina HOM05D000347 ORTHO05D001997 4.1e-19 97.4 52 82.7
EL10Ac2g03733 Beta vulgaris HOM05D000347 ORTHO05D001997 4.1e-19 97.4 52 82.7
Ah.11g043720 Amaranthus hybridus HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
CAN.G1352.19 Capsicum annuum HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
Nitab4.5_0004005g0020 Nicotiana tabacum HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
Nitab4.5_0005539g0030 Nicotiana tabacum HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
Peaxi162Scf00011g00030 Petunia axillaris HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
Sc23g0005150 Simmondsia chinensis HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
Solyc01g104510.3 Solanum lycopersicum HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
Sopen01g047010 Solanum pennellii HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
PGSC0003DMG400023743 Solanum tuberosum HOM05D000347 ORTHO05D001997 5.3e-19 97.1 52 82.7
Aqoxy1G01573 Aquilegia oxysepala HOM05D000347 ORTHO05D001997 6.9e-19 96.7 52 82.7
CSS0024880 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 6.9e-19 96.7 55 76.4
CDE06G0438 Ceratophyllum demersum HOM05D000347 ORTHO05D001997 6.9e-19 96.7 52 82.7
ATR1098G157 Amborella trichopoda HOM05D000347 ORTHO05D001997 9.0e-19 96.3 52 82.7
QL04p025124 Quercus lobata HOM05D000347 ORTHO05D001997 9.0e-19 96.3 52 80.8
CSS0003571 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 80.8
CSS0018416 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 80.8
Dinv19349 Davidia involucrata HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 80.8
Lj9C240G9 Lonicera japonica HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 80.8
Lj9C310G6 Lonicera japonica HOM05D000347 ORTHO05D001997 1.2e-18 95.9 54 77.8
Manes.11G162700 Manihot esculenta HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 82.7
Oeu032644.1 Olea europaea HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 80.8
Oeu064616.1 Olea europaea HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 80.8
Rhsim08G0226500 Rhododendron simsii HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 80.8
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 1.2e-18 95.9 52 80.8
SalBow1G5034 Salvia bowleyana HOM05D000347 ORTHO05D001997 1.5e-18 95.5 52 78.8
SalBow6G7087 Salvia bowleyana HOM05D000347 ORTHO05D001997 1.5e-18 95.5 52 78.8
MSTRG.16536 Avicennia marina HOM05D000347 ORTHO05D001997 2.0e-18 95.1 52 82.7
Hund03282 Selenicereus undatus HOM05D000347 ORTHO05D001997 2.0e-18 95.1 52 80.8
CSS0006182 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 2.6e-18 94.7 55 74.5
AUR62009045 Chenopodium quinoa HOM05D000347 ORTHO05D001997 2.6e-18 94.7 52 80.8
AUR62020617 Chenopodium quinoa HOM05D000347 ORTHO05D001997 2.6e-18 94.7 52 80.8
Nn5g27179 Nelumbo nucifera HOM05D000347 ORTHO05D001997 2.6e-18 94.7 52 80.8
vmacro19903 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 2.6e-18 94.7 52 78.8
Manes.05G060600 Manihot esculenta HOM05D000347 ORTHO05D001997 3.4e-18 94.4 52 80.8
SEGI_41468 Sequoiadendron giganteum HOM05D000347 ORTHO05D001997 3.4e-18 94.4 54 77.8
CiPaw.14G013900 Carya illinoinensis HOM05D000347 ORTHO05D001997 4.5e-18 94.0 52 78.8
Potri.002G216200 Populus trichocarpa HOM05D000347 ORTHO05D001997 4.5e-18 94.0 52 80.8
Potri.014G179700 Populus trichocarpa HOM05D000347 ORTHO05D001997 4.5e-18 94.0 52 80.8
Sabra02G0168500 Salix brachista HOM05D000347 ORTHO05D001997 4.5e-18 94.0 52 80.8
CSS0038685 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 5.9e-18 93.6 55 74.5
Cpa.g.sc41.39 Carica papaya HOM05D000347 ORTHO05D001997 5.9e-18 93.6 52 78.8
Ca_18258_v3 Cicer arietinum L. HOM05D000347 ORTHO05D001997 5.9e-18 93.6 52 78.8
ECA236G1187 Erigeron canadensis HOM05D000347 ORTHO05D001997 5.9e-18 93.6 52 78.8
Migut.N01033 Erythranthe guttata HOM05D000347 ORTHO05D001997 5.9e-18 93.6 52 78.8
Lsat_1_v5_gn_7_77940 Lactuca sativa HOM05D000347 ORTHO05D001997 5.9e-18 93.6 52 78.8
Lj9C311G16 Lonicera japonica HOM05D000347 ORTHO05D001997 5.9e-18 93.6 55 76.4
TWI59G0355 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 5.9e-18 93.6 52 80.8
Actinidia39058 Actinidia chinensis HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 76.9
Hma1.2p1_0557F.1_g178310 Hydrangea macrophylla HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 76.9
Hma1.2p1_2850F.1_g329410 Hydrangea macrophylla HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 76.9
Lj9C310G3 Lonicera japonica HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 78.8
Lj9C312G10 Lonicera japonica HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 78.8
MD02G1228600 Malus domestica HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 78.8
MD07G1083900 Malus domestica HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 78.8
Medtr4g096880 Medicago truncatula HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 78.8
PSO675G1679 Papaver somniferum HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 78.8
Prupe.2G110700 Prunus persica HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 78.8
TAR629G0757 Trochodendron aralioides HOM05D000347 ORTHO05D001997 7.6e-18 93.2 52 80.8
Dinv24259 Davidia involucrata HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
FvH4_7g08380 Fragaria vesca HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
FAN01G2807 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
FAN03G0015 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
FAN06G2384 Fragaria x ananassa HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
Gohir.A13G012000 Gossypium hirsutum HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
Gohir.D13G013100 Gossypium hirsutum HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
Gorai.013G014000 Gossypium raimondii HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
RcHm_v2.0_Chr1g0340261 Rosa chinensis HOM05D000347 ORTHO05D001997 1.0e-17 92.8 52 78.8
TAR627G1203 Trochodendron aralioides HOM05D000347 ORTHO05D001997 1.0e-17 92.8 51 82.4
CSS0004042 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 1.3e-17 92.4 55 74.5
CSS0040163 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 1.3e-17 92.4 55 74.5
Pp3c22_5980 Physcomitrium patens HOM05D000347 ORTHO05D001997 1.3e-17 92.4 52 76.9
CiPaw.13G019800 Carya illinoinensis HOM05D000347 ORTHO05D001997 1.7e-17 92.0 52 76.9
ClCG05G002740 Citrullus lanatus HOM05D000347 ORTHO05D001997 1.7e-17 92.0 52 76.9
MELO3C006243.2 Cucumis melo HOM05D000347 ORTHO05D001997 1.7e-17 92.0 52 76.9
CsaV3_3G010230 Cucumis sativus L. HOM05D000347 ORTHO05D001997 1.7e-17 92.0 52 76.9
Oeu039106.1 Olea europaea HOM05D000347 ORTHO05D001997 1.7e-17 92.0 52 76.9
Sabra14G0137900 Salix brachista HOM05D000347 ORTHO05D001997 1.7e-17 92.0 52 78.8
Sabra14G0140000 Salix brachista HOM05D000347 ORTHO05D001997 1.7e-17 92.0 52 78.8
Sed0020652 Sechium edule HOM05D000347 ORTHO05D001997 1.7e-17 92.0 52 76.9
vmacro01787 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 1.7e-17 92.0 51 78.4
CSS0013040 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 2.2e-17 91.7 52 78.8
CSS0030733 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 2.2e-17 91.7 55 72.7
Glyma.05G131200 Glycine max HOM05D000347 ORTHO05D001997 2.2e-17 91.7 52 76.9
Glyma.08G085900 Glycine max HOM05D000347 ORTHO05D001997 2.2e-17 91.7 52 76.9
PSO541G1840 Papaver somniferum HOM05D000347 ORTHO05D001997 2.2e-17 91.7 52 76.9
Phvul.002G191500 Phaseolus vulgaris HOM05D000347 ORTHO05D001997 2.2e-17 91.7 52 76.9
TPR.G2951 Trifolium pratense HOM05D000347 ORTHO05D001997 2.2e-17 91.7 52 76.9
VMungo0251G3769 Vigna mungo HOM05D000347 ORTHO05D001997 2.2e-17 91.7 52 76.9
Migut.B00663 Erythranthe guttata HOM05D000347 ORTHO05D001997 2.9e-17 91.3 52 78.8
Mapoly0101s0048 Marchantia polymorpha HOM05D000347 ORTHO05D001997 2.9e-17 91.3 52 76.9
Rhsim11G0131900 Rhododendron simsii HOM05D000347 ORTHO05D001997 2.9e-17 91.3 52 75.0
COL.COLO4_19347 Corchorus olitorius HOM05D000347 ORTHO05D001997 3.8e-17 90.9 52 76.9
Duzib106G1861 Durio zibethinus HOM05D000347 ORTHO05D001997 3.8e-17 90.9 52 76.9
Duzib128G0635 Durio zibethinus HOM05D000347 ORTHO05D001997 3.8e-17 90.9 52 76.9
Lalb_Chr12g0209011 Lupinus albus HOM05D000347 ORTHO05D001997 3.8e-17 90.9 52 76.9
Thecc.10G000800 Theobroma cacao HOM05D000347 ORTHO05D001997 3.8e-17 90.9 52 76.9
Eucgr.D01137 Eucalyptus grandis HOM05D000347 ORTHO05D001997 5.0e-17 90.5 52 73.1
SMO196G0209 Selaginella moellendorffii HOM05D000347 ORTHO05D001997 5.0e-17 90.5 52 78.8
CSS0018898 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 6.5e-17 90.1 52 76.9
Lj9C312G3 Lonicera japonica HOM05D000347 ORTHO05D001997 6.5e-17 90.1 50 80.0
CSS0038621 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 8.5e-17 89.7 55 72.7
FAN10G1979 Fragaria x ananassa HOM05D000347 ORTHO05D001997 8.5e-17 89.7 52 76.9
FAN10G2528 Fragaria x ananassa HOM05D000347 ORTHO05D001997 8.5e-17 89.7 52 76.9
Sed0020879 Sechium edule HOM05D000347 ORTHO05D001997 8.5e-17 89.7 52 75.0
Psat7g089400 Pisum sativum HOM05D000347 ORTHO05D001997 1.1e-16 89.4 52 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2157 Anthoceros agrestis HOM05D000347 ORTHO05D001997 1.4e-16 89.0 52 75.0
Lalb_Chr07g0188551 Lupinus albus HOM05D000347 ORTHO05D001997 1.4e-16 89.0 52 75.0
PGR083G0589 Punica granatum HOM05D000347 ORTHO05D001997 1.4e-16 89.0 52 73.1
Os03g0640100 Oryza sativa ssp. japonica HOM05D000347 ORTHO05D001997 1.9e-16 88.6 52 73.1
TWI14G0713 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 1.9e-16 88.6 52 75.0
CBR_g24066 Chara braunii HOM05D000347 ORTHO05D001997 3.2e-16 87.8 52 75.0
SHI10568 Sapria himalayana HOM05D000347 ORTHO05D001997 3.2e-16 87.8 52 75.0
Zm00001eb050670 Zea mays HOM05D000347 ORTHO05D001997 3.2e-16 87.8 52 73.1
Zm00001eb050680 Zea mays HOM05D000347 ORTHO05D001997 3.2e-16 87.8 52 73.1
HanXRQChr01g0021821 Helianthus annuus HOM05D000347 ORTHO05D001997 4.2e-16 87.4 52 75.0
arahy.Tifrunner.gnm1.ann1.1WQ6G8 Arachis hypogaea HOM05D000347 ORTHO05D001997 5.5e-16 87.0 52 73.1
arahy.Tifrunner.gnm1.ann1.YQX6Q2 Arachis hypogaea HOM05D000347 ORTHO05D001997 5.5e-16 87.0 52 73.1
ECA240G3556 Erigeron canadensis HOM05D000347 ORTHO05D001997 5.5e-16 87.0 52 73.1
Oeu037467.1 Olea europaea HOM05D000347 ORTHO05D001997 5.5e-16 87.0 52 71.2
SGA_v2.0_scaffold145G36065 Striga asiatica HOM05D000347 ORTHO05D001997 1.6e-15 85.5 48 81.2
TWI23G0290 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 1.6e-15 85.5 52 73.1
HanXRQChr11g0324621 Helianthus annuus HOM05D000347 ORTHO05D001997 3.6e-15 84.3 50 76.0
CANSAT35G1460 Cannabis sativa HOM05D000347 ORTHO05D001997 4.6e-15 84.0 52 69.2
Rhsim11G0132200 Rhododendron simsii HOM05D000083 ORTHO05D001732 4.6e-15 84.0 53 71.7
Lj4g0023238 Lotus japonicus HOM05D000347 ORTHO05D001997 1.8e-14 82.0 52 73.1
Zm00001eb218750 Zea mays HOM05D000347 ORTHO05D001997 3.9e-14 80.9 56 66.1
C02p13490 Brassica napus HOM05D000347 ORTHO05D001997 1.9e-13 78.6 52 75.0
BolC2t07461H Brassica oleracea HOM05D000347 ORTHO05D001997 1.9e-13 78.6 52 75.0
DCAR_001441 Daucus carota HOM05D000347 ORTHO05D001997 5.7e-13 77.0 53 66.0
Cre12.g523200 Chlamydomonas reinhardtii HOM05D000347 ORTHO05D001997 7.4e-13 76.6 51 68.6
BcaC03g14110 Brassica carinata HOM05D000347 ORTHO05D001997 9.7e-13 76.3 52 73.1
HanXRQChr02g0058821 Helianthus annuus HOM05D000347 ORTHO05D001997 1.3e-12 75.9 52 65.4
PRCOL_00006753 Prasinoderma coloniale HOM05D000347 ORTHO05D001997 2.2e-12 75.1 52 67.3
Lsat_1_v5_gn_9_118141 Lactuca sativa HOM05D000347 ORTHO05D001997 6.3e-12 73.6 52 63.5
A03p40540 Brassica napus HOM05D000347 ORTHO05D001997 9.1e-11 69.7 33 97.0
MCO03G523 Micromonas commoda HOM05D000347 ORTHO05D001997 3.4e-10 67.8 52 63.5
BcaB05g22415 Brassica carinata HOM05D000347 ORTHO05D001997 4.5e-10 67.4 52 67.3
Oeu000196.1 Olea europaea HOM05D000347 ORTHO05D001997 4.5e-10 67.4 52 59.6
Haze_26415 Corylus avellana HOM05D000347 ORTHO05D001997 7.7e-10 66.6 51 60.8
Cc02_g22240 Coffea canephora HOM05D000347 ORTHO05D001997 2.9e-09 64.7 37 73.0
CDE02G4715 Ceratophyllum demersum HOM05D000347 ORTHO05D001997 8.5e-09 63.2 51 54.9
GSVIVG01013978001 Vitis vinifera HOM05D000347 ORTHO05D001997 2.5e-08 61.6 37 70.3
A02p07850 Brassica napus HOM05D000347 ORTHO05D001997 9.4e-08 59.7 52 63.5
BraA02t05858Z Brassica rapa HOM05D000347 ORTHO05D001997 9.4e-08 59.7 52 63.5
A03p53220 Brassica napus HOM05D000347 ORTHO05D001997 1.2e-07 59.3 28 92.9
A05p31600 Brassica napus HOM05D000347 ORTHO05D001997 4.6e-07 57.4 27 92.6
SEGI_31684 Sequoiadendron giganteum HOM05D000347 ORTHO05D386026 4.6e-07 57.4 37 64.9
CSS0019246 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D001997 1.4e-06 55.8 34 67.6


User provided reference genes

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