Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 1.3e-256 889.4 464 100.0
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 4.8e-238 827.8 468 93.6
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 4.8e-238 827.8 468 93.6
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 5.7e-223 777.7 468 89.3
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 7.7e-220 767.3 468 88.0
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.6e-201 706.4 453 83.4
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.7e-163 580.1 470 70.2
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 4.8e-145 518.8 456 63.8
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.2e-133 479.6 484 57.6
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 3.9e-131 472.6 505 55.2
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 5.1e-131 472.2 474 58.4
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 8.7e-131 471.5 467 58.5
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 8.7e-131 471.5 467 58.5
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 1.3e-129 467.6 467 58.0
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 3.7e-129 466.1 465 57.4
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 3.4e-127 459.5 457 59.1
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 4.2e-125 452.6 467 57.2
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 5.5e-125 452.2 465 57.0
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.9e-123 446.0 462 57.1
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 5.1e-123 445.7 455 56.5
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 8.2e-121 438.3 453 56.5
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 1.4e-120 437.6 453 56.7
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 9.1e-120 434.9 456 56.6
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 3.4e-119 433.0 463 54.9
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.9e-117 427.2 466 54.9
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 4.2e-117 426.0 481 53.4
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 1.1e-114 417.9 452 52.7
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 3.7e-113 412.9 461 52.5
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.2e-111 407.9 467 51.8
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.3e-110 404.4 400 59.0
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.2e-110 403.7 374 58.8
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 5.5e-109 399.1 458 52.0
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 2.1e-108 397.1 388 55.9
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.4e-107 394.4 459 49.2
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 6.7e-107 392.1 390 55.6
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.5e-106 391.0 358 60.3
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 5.7e-106 389.0 479 49.9
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 1.3e-105 387.9 415 53.0
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 6.3e-105 385.6 460 49.8
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.4e-104 383.6 390 54.6
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.2e-103 381.3 401 54.9
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.6e-103 380.9 378 55.3
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 2.0e-103 380.6 333 58.9
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 3.8e-102 376.3 347 57.6
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 3.8e-102 376.3 463 48.4
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 8.5e-102 375.2 298 62.8
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 2.5e-101 373.6 299 62.2
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 7.2e-101 372.1 299 60.9
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 1.6e-100 370.9 359 55.2
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 2.1e-100 370.5 299 61.5
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 1.8e-99 367.5 313 60.7
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.3e-99 367.1 390 53.1
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 3.0e-99 366.7 491 46.0
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 4.0e-99 366.3 467 49.3
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 6.8e-99 365.5 399 51.4
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 8.8e-99 365.2 346 57.5
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.4e-98 363.2 481 47.8
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 5.7e-98 362.5 299 60.2
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 2.8e-97 360.1 441 48.5
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 3.7e-97 359.8 395 52.4
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 8.3e-97 358.6 448 47.3
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 8.3e-97 358.6 305 60.3
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 1.1e-96 358.2 468 46.2
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 3.1e-96 356.7 469 47.5
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 3.1e-96 356.7 554 42.1
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.6e-95 354.4 387 51.7
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.6e-95 354.4 299 60.5
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 2.0e-95 354.0 439 48.1
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 3.5e-95 353.2 404 51.0
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 5.9e-95 352.4 311 58.8
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 5.9e-95 352.4 346 54.9
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 1.0e-94 351.7 443 47.6
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.7e-94 350.9 413 48.4
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 1.7e-94 350.9 350 56.3
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 2.2e-94 350.5 410 50.7
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 8.5e-94 348.6 458 46.9
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.1e-93 348.2 478 44.8
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 5.5e-93 345.9 397 50.6
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 9.4e-93 345.1 461 45.8
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.6e-92 344.4 396 48.5
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.6e-92 344.4 466 45.5
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 2.1e-92 344.0 386 51.3
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.6e-92 343.2 463 44.7
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 4.7e-92 342.8 398 50.3
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 4.7e-92 342.8 299 57.2
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 6.8e-91 339.0 541 41.6
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 4.4e-90 336.3 487 45.6
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.7e-90 335.9 455 47.0
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 7.5e-90 335.5 425 46.8
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 1.3e-89 334.7 392 48.5
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 1.1e-88 331.6 398 49.0
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 1.8e-88 330.9 398 47.5
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 1.7e-86 324.3 355 51.8
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 5.0e-86 322.8 394 47.7
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 6.6e-86 322.4 458 44.1
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 2.5e-85 320.5 266 59.0
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 5.5e-85 319.3 390 49.7
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 7.2e-85 318.9 384 49.2
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 3.7e-81 306.6 548 40.1
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 7.0e-80 302.4 346 49.7
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 2.8e-76 290.4 459 39.4
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.0e-74 284.3 300 55.0
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.1e-72 278.5 430 41.4
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 3.2e-72 276.9 414 43.0
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 5.4e-72 276.2 392 42.9
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 5.0e-70 269.6 372 46.2
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 2.2e-65 254.2 295 47.5
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 4.9e-65 253.1 342 46.2
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 6.4e-65 252.7 331 42.3
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.4e-64 249.6 385 43.6
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.1e-59 235.3 333 38.1
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.6e-55 221.5 499 34.3
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 9.6e-53 212.2 384 40.4
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 2.1e-52 211.1 184 56.0
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.3e-49 201.8 284 45.4
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.8e-49 200.3 278 42.1
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.6e-46 189.5 274 43.1
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 3.1e-43 180.6 134 65.7
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 5.1e-38 163.3 385 30.4
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 1.3e-33 148.7 116 64.7
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.1e-27 127.5 290 33.4
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 3.9e-22 110.5 116 59.5
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.8e-19 101.7 213 40.4
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.0e-18 98.2 86 59.3
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 1.1e-13 82.4 75 53.3
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 2.8e-12 77.8 177 29.9
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.1e-11 75.9 62 53.2
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.0e-10 71.6 69 56.5
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 2.0e-10 71.6 65 43.1


User provided reference genes

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