Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07362 Brassica carinata HOM05D000793 ORTHO05D017144 5.5e-142 507.7 267 100.0
BolC5t35144H Brassica oleracea HOM05D000793 ORTHO05D000783 6.3e-138 494.2 268 98.1
C09p75200 Brassica napus HOM05D000793 ORTHO05D000783 1.8e-137 492.7 267 97.8
BraA05t23195Z Brassica rapa HOM05D000793 ORTHO05D000783 3.0e-132 475.3 268 95.1
A05p44610 Brassica napus HOM05D000793 ORTHO05D000783 6.3e-130 467.6 270 94.1
BcaC05g30465 Brassica carinata HOM05D000793 ORTHO05D000783 6.1e-125 451.1 271 90.8
AL3G10840 Arabidopsis lyrata HOM05D000793 ORTHO05D000783 2.6e-107 392.5 268 79.9
Carub.0003s0072 Capsella rubella HOM05D000793 ORTHO05D000783 7.8e-104 380.9 269 79.2
AT3G01370 Arabidopsis thaliana HOM05D000793 ORTHO05D000783 1.6e-101 373.2 268 77.2
Sp3g00700 Schrenkiella parvula HOM05D000793 ORTHO05D000783 2.1e-101 372.9 252 82.9
Thhalv10019986m.g Eutrema salsugineum HOM05D000793 ORTHO05D000783 2.4e-97 359.4 264 78.8
CARHR075610 Cardamine hirsuta HOM05D000793 ORTHO05D000783 2.1e-96 356.3 267 76.0
Aa31LG5G10490 Aethionema arabicum HOM05D000793 ORTHO05D000783 3.4e-75 285.8 270 63.3
THA.LOC104821060 Tarenaya hassleriana HOM05D000793 ORTHO05D000783 2.1e-61 240.0 285 54.7
vmacro05789 Vaccinium macrocarpon HOM05D000793 ORTHO05D000783 7.7e-43 178.3 140 65.7
Atru.chr8.2412 Acer truncatum HOM05D000793 ORTHO05D017144 2.2e-42 176.8 191 51.8
Potri.001G350801 Populus trichocarpa HOM05D000793 ORTHO05D000783 2.9e-42 176.4 249 47.0
Thecc.04G002900 Theobroma cacao HOM05D000793 ORTHO05D000783 8.5e-42 174.9 184 56.5
RhsimUnG0168000 Rhododendron simsii HOM05D000793 ORTHO05D000783 1.4e-41 174.1 139 64.0
Ciclev10013715m.g Citrus clementina HOM05D000793 ORTHO05D000783 1.6e-40 170.6 151 62.3
Gohir.A09G024400 Gossypium hirsutum HOM05D000793 ORTHO05D000783 2.1e-40 170.2 140 65.0
Actinidia06043 Actinidia chinensis HOM05D000793 ORTHO05D000783 3.6e-40 169.5 143 65.0
Gorai.006G027700 Gossypium raimondii HOM05D000793 ORTHO05D000783 4.6e-40 169.1 246 44.3
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.8e-39 167.2 195 53.3
Lj2g0022012 Lotus japonicus HOM05D000793 ORTHO05D000783 2.3e-39 166.8 141 61.7
Manes.17G119900 Manihot esculenta HOM05D000793 ORTHO05D000783 3.0e-39 166.4 169 55.0
CSS0007180 Camellia sinensis var. sinensis HOM05D000793 ORTHO05D000783 3.9e-39 166.0 140 63.6
Dinv33675 Davidia involucrata HOM05D000793 ORTHO05D000783 3.9e-39 166.0 142 63.4
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 6.7e-39 165.2 208 49.0
Glyma.19G014000 Glycine max HOM05D000793 ORTHO05D000783 6.7e-39 165.2 141 63.1
Lalb_Chr06g0176481 Lupinus albus HOM05D000793 ORTHO05D000783 6.7e-39 165.2 188 51.6
Oeu047337.2 Olea europaea HOM05D000793 ORTHO05D000783 6.7e-39 165.2 141 63.8
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 6.7e-39 165.2 140 62.9
Gohir.D09G023600 Gossypium hirsutum HOM05D000793 ORTHO05D000783 8.8e-39 164.9 246 43.9
Lsat_1_v5_gn_0_16540 Lactuca sativa HOM05D000793 ORTHO05D000783 1.1e-38 164.5 154 57.8
Rhsim10G0028400 Rhododendron simsii HOM05D000793 ORTHO05D017144 1.1e-38 164.5 139 61.2
FAN05G3418 Fragaria x ananassa HOM05D000793 ORTHO05D000783 1.5e-38 164.1 174 55.2
FAN14G1704 Fragaria x ananassa HOM05D000793 ORTHO05D000783 1.5e-38 164.1 174 55.2
TWI12G1092 Tripterygium wilfordii HOM05D000793 ORTHO05D000783 1.5e-38 164.1 274 43.1
Sopen02g031990 Solanum pennellii HOM05D000793 ORTHO05D000783 2.0e-38 163.7 194 54.1
CAN.G206.62 Capsicum annuum HOM05D000793 ORTHO05D000783 2.5e-38 163.3 194 53.1
Eucgr.I01877 Eucalyptus grandis HOM05D000793 ORTHO05D000783 2.5e-38 163.3 224 44.6
FvH4_6g50050 Fragaria vesca HOM05D000793 ORTHO05D000783 3.3e-38 162.9 174 55.2
Lj7A408G13 Lonicera japonica HOM05D000793 ORTHO05D000783 3.3e-38 162.9 142 62.0
arahy.Tifrunner.gnm1.ann1.JVCB1P Arachis hypogaea HOM05D000793 ORTHO05D000783 4.3e-38 162.5 139 61.2
DCAR_001431 Daucus carota HOM05D000793 ORTHO05D000783 4.3e-38 162.5 140 59.3
RcHm_v2.0_Chr2g0170301 Rosa chinensis HOM05D000793 ORTHO05D000783 4.3e-38 162.5 140 62.9
arahy.Tifrunner.gnm1.ann1.WN4T5U Arachis hypogaea HOM05D000793 ORTHO05D000783 5.7e-38 162.2 139 59.7
Migut.H00160 Erythranthe guttata HOM05D000793 ORTHO05D000783 7.4e-38 161.8 140 59.3
Nitab4.5_0007185g0050 Nicotiana tabacum HOM05D000793 ORTHO05D000783 9.7e-38 161.4 216 49.1
FAN02G0334 Fragaria x ananassa HOM05D000793 ORTHO05D000783 1.3e-37 161.0 173 54.3
CSS0044382 Camellia sinensis var. sinensis HOM05D000793 ORTHO05D000783 1.7e-37 160.6 149 60.4
Hma1.2p1_0697F.1_g205060 Hydrangea macrophylla HOM05D000793 ORTHO05D000783 1.7e-37 160.6 265 43.0
MD17G1040600 Malus domestica HOM05D000793 ORTHO05D000783 1.7e-37 160.6 171 54.4
Psat1g079880 Pisum sativum HOM05D000793 ORTHO05D000783 1.7e-37 160.6 164 54.3
TAR484G0001 Trochodendron aralioides HOM05D000793 ORTHO05D017144 1.7e-37 160.6 143 60.1
TAR629G1707 Trochodendron aralioides HOM05D000793 ORTHO05D000783 1.7e-37 160.6 143 60.1
Cfa007473 Carpinus fangiana HOM05D000793 ORTHO05D000783 2.8e-37 159.8 207 48.8
PGR142G1623 Punica granatum HOM05D000793 ORTHO05D000783 2.8e-37 159.8 176 51.7
PSO478G2034 Papaver somniferum HOM05D000793 ORTHO05D000783 3.7e-37 159.5 141 61.0
Cpa.g.sc14.82 Carica papaya HOM05D000793 ORTHO05D000783 4.8e-37 159.1 250 42.8
MBI14_g15140_MAGBIO Magnolia biondii HOM05D000793 ORTHO05D000783 6.3e-37 158.7 269 42.4
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 6.3e-37 158.7 164 57.3
Prupe.3G278400 Prunus persica HOM05D000793 ORTHO05D000783 8.2e-37 158.3 140 60.0
PGSC0003DMG400001391 Solanum tuberosum HOM05D000793 ORTHO05D000783 8.2e-37 158.3 167 56.9
Haze_14624 Corylus avellana HOM05D000793 ORTHO05D000783 1.1e-36 157.9 140 61.4
Sed0002278 Sechium edule HOM05D000793 ORTHO05D000783 1.1e-36 157.9 215 47.9
ATR0624G084 Amborella trichopoda HOM05D000793 ORTHO05D000783 1.4e-36 157.5 144 61.8
Aqoxy3G00884 Aquilegia oxysepala HOM05D000793 ORTHO05D000783 2.4e-36 156.8 238 43.7
QL02p078191 Quercus lobata HOM05D000793 ORTHO05D000783 4.1e-36 156.0 140 59.3
QL93p0205_0125 Quercus lobata HOM05D000793 ORTHO05D000783 4.1e-36 156.0 140 59.3
Ca_04228_v3 Cicer arietinum L. HOM05D000793 ORTHO05D000783 5.3e-36 155.6 141 58.9
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 6.9e-36 155.2 249 43.4
CiPaw.03G034100 Carya illinoinensis HOM05D000793 ORTHO05D000783 1.5e-35 154.1 253 42.7
Nn3g17015 Nelumbo nucifera HOM05D000793 ORTHO05D000783 2.0e-35 153.7 245 40.4
TPR.G31462 Trifolium pratense HOM05D000793 ORTHO05D000783 3.4e-35 152.9 157 53.5
GSVIVG01032542001 Vitis vinifera HOM05D000793 ORTHO05D000783 3.4e-35 152.9 215 47.9
Ah.09g226400 Amaranthus hybridus HOM05D000793 ORTHO05D000783 5.9e-35 152.1 154 53.2
ClCG10G014560 Citrullus lanatus HOM05D000793 ORTHO05D000783 7.7e-35 151.8 141 58.2
Zm00001eb424430 Zea mays HOM05D000793 ORTHO05D000783 7.7e-35 151.8 197 45.2
Zm00001eb424440 Zea mays HOM05D000793 ORTHO05D000783 7.7e-35 151.8 197 45.2
AUR62013340 Chenopodium quinoa HOM05D000793 ORTHO05D000783 2.2e-34 150.2 206 44.7
MELO3C009922.2 Cucumis melo HOM05D000793 ORTHO05D000783 2.2e-34 150.2 141 56.7
EL10Ac8g18678 Beta vulgaris HOM05D000793 ORTHO05D000783 3.8e-34 149.4 243 43.2
Phvul.004G020800 Phaseolus vulgaris HOM05D000793 ORTHO05D000783 5.0e-34 149.1 188 48.4
Hund26520 Selenicereus undatus HOM05D000793 ORTHO05D000783 6.5e-34 148.7 142 56.3
Cc07_g02650 Coffea canephora HOM05D000793 ORTHO05D000783 1.4e-33 147.5 143 58.7
CsaV3_3G042020 Cucumis sativus L. HOM05D000793 ORTHO05D000783 4.2e-33 146.0 144 56.2
Sc18g0000520 Simmondsia chinensis HOM05D000793 ORTHO05D000783 9.4e-33 144.8 140 56.4
Medtr6g008410 Medicago truncatula HOM05D000793 ORTHO05D000783 2.7e-32 143.3 162 50.6
VMungo0464G0194 Vigna mungo HOM05D000793 ORTHO05D000783 7.9e-32 141.7 195 46.2
AUR62011146 Chenopodium quinoa HOM05D000793 ORTHO05D000783 1.0e-31 141.4 147 53.7
CDE06G0691 Ceratophyllum demersum HOM05D000793 ORTHO05D017144 1.4e-31 141.0 257 41.2
CDE04G0840 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 1.8e-31 140.6 262 39.3
SGA_v2.0_scaffold135G34834 Striga asiatica HOM05D000793 ORTHO05D000783 6.7e-31 138.7 210 43.3
Dinv35019 Davidia involucrata HOM05D000793 ORTHO05D000783 2.2e-29 133.7 120 59.2
SalBow1G7326 Salvia bowleyana HOM05D000793 ORTHO05D000783 2.2e-29 133.7 116 58.6
Glyma.19G014100 Glycine max HOM05D000793 ORTHO05D000783 1.1e-28 131.3 176 45.5
SEGI_32454 Sequoiadendron giganteum HOM05D000793 ORTHO05D000783 5.3e-28 129.0 173 43.4
Rhsim10G0028300 Rhododendron simsii HOM05D000793 ORTHO05D017144 3.5e-27 126.3 143 47.6
Rhsim10G0028200 Rhododendron simsii HOM05D000793 ORTHO05D017144 5.9e-27 125.6 116 60.3
Phvul.004G020900 Phaseolus vulgaris HOM05D000793 ORTHO05D000783 7.2e-25 118.6 101 54.5
SEGI_20678 Sequoiadendron giganteum HOM05D000793 ORTHO05D000783 1.1e-20 104.8 98 52.0
Pp3c7_23880 Physcomitrium patens HOM05D000793 ORTHO05D000783 2.4e-20 103.6 94 54.3
HanXRQChr15g0474401 Helianthus annuus HOM05D000793 ORTHO05D000783 1.2e-19 101.3 221 36.7
Mapoly0006s0098 Marchantia polymorpha HOM05D000793 ORTHO05D000783 1.2e-16 91.3 80 56.2
unitig_744.g24347 Utricularia gibba HOM05D000793 ORTHO05D000783 1.6e-16 90.9 71 62.0
Rhsim10G0028500 Rhododendron simsii HOM05D000793 ORTHO05D017144 5.2e-15 85.9 139 40.3
Pp3c13_17270 Physcomitrium patens HOM05D000793 ORTHO05D000783 2.8e-13 80.1 122 39.3
Pp3c12_15870 Physcomitrium patens HOM05D000793 ORTHO05D000783 8.3e-13 78.6 90 44.4
HPP92_010836 Vanilla planifolia HOM05D000793 ORTHO05D000783 2.7e-11 73.6 114 39.5
MD09G1040000 Malus domestica HOM05D000793 ORTHO05D017144 5.5e-09 65.9 45 64.4
VMungo1215G1993 Vigna mungo HOM05D000793 ORTHO05D000783 1.8e-07 60.8 191 31.9


User provided reference genes

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